bug fix: CLI parameter handling (wrong reference)

finalize.py

@@ -139,7 +139,8 @@ import json
 # path = '../curation-prod.json'
 # credentials = service_account.Credentials.from_service_account_file(path)
 # df = pd.read_gbq("SELECT * FROM io.icd10_partial_io",credentials=credentials,dialect='standard')
-f = open('config.json')
+filename = 'config.json' if 'config' not in SYS_ARGS else SYS_ARGS['config']
+f = open(filename)
 config = json.loads(f.read())
 args = config['pipeline']
 f.close()
@@ -152,8 +153,10 @@ if __name__ == '__main__' :
     """
     if 'move' in SYS_ARGS :
         table = SYS_ARGS['from']
-        contexts = [item['context'] for item in config['pipeline'] if item['from'] == args['from']]
+        contexts = [item['context'] for item in config['pipeline'] if item['from'] == SYS_ARGS['from']]
         args = dict(config,**{"private_key":"../curation-prod.json"})
         args = dict(args,**SYS_ARGS)
         args['contexts'] = contexts
-        move(**args)
+        move(**args)
+    else:
+        print ("NOT YET READY !")