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bug fix: CLI parameter handling (wrong reference)

This commit is contained in:
Steve Nyemba 2020-04-01 00:25:20 -05:00
parent 89ed5d5d46
commit 5c9fda4018
1 changed files with 6 additions and 3 deletions
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7
finalize.py
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@ -139,7 +139,8 @@ import json
# path = '../curation-prod.json' # path = '../curation-prod.json'
# credentials = service_account.Credentials.from_service_account_file(path) # credentials = service_account.Credentials.from_service_account_file(path)
# df = pd.read_gbq("SELECT * FROM io.icd10_partial_io",credentials=credentials,dialect='standard') # df = pd.read_gbq("SELECT * FROM io.icd10_partial_io",credentials=credentials,dialect='standard')
f = open('config.json') filename = 'config.json' if 'config' not in SYS_ARGS else SYS_ARGS['config']
f = open(filename)
config = json.loads(f.read()) config = json.loads(f.read())
args = config['pipeline'] args = config['pipeline']
f.close() f.close()
@ -152,8 +153,10 @@ if __name__ == '__main__' :
""" """
if 'move' in SYS_ARGS : if 'move' in SYS_ARGS :
table = SYS_ARGS['from'] table = SYS_ARGS['from']
contexts = [item['context'] for item in config['pipeline'] if item['from'] == args['from']] contexts = [item['context'] for item in config['pipeline'] if item['from'] == SYS_ARGS['from']]
args = dict(config,**{"private_key":"../curation-prod.json"}) args = dict(config,**{"private_key":"../curation-prod.json"})
args = dict(args,**SYS_ARGS) args = dict(args,**SYS_ARGS)
args['contexts'] = contexts args['contexts'] = contexts
move(**args) move(**args)
else:
print ("NOT YET READY !")