aou/data-maker
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bug fix: write data

This commit is contained in:
Steve Nyemba 2022-06-10 13:00:28 -05:00
parent f3598efa0d
commit e8edf886ad
2 changed files with 5 additions and 4 deletions
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7
data/maker/__init__.py
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@ -380,18 +380,19 @@ class Generator (Learner):
_schema = self.get_schema()
_schema = [{'name':_item.name,'type':_item.field_type} for _item in _schema]
_schema = [{'name':_item.name,'type':(_item.field_type if has_attr(_item,'field_type') else 'VARCHAR(256)')} for _item in _schema]
_df = self.format(_df,_schema)
_log = [{"name":_schema[i]['name'],"dataframe":_df[_df.columns[i]].dtypes.name,"schema":_schema[i]['type']} for i in np.arange(len(_schema)) ]
self.log(**{"action":"consolidate","input":_log})
# w = transport.factory.instance(doc='observation',provider='mongodb',context='write',db='IOV01_LOGS',auth_file='/home/steve/dev/transport/mongo.json')
# w.write(_df)
cols = [name for name in _df.columns if name.endswith('datetime')]
# cols = [name for name in _df.columns if name.endswith('datetime')]
# print (_df[cols])
writer = transport.factory.instance(**_store)
writer.write(_df[cols],schema=[_item for _item in _schema if _item['name'] in cols])
writer.write(_df,schema=[_item for _item in _schema if _item['name'] in cols])

2
setup.py
View File

@ -4,7 +4,7 @@ import sys
def read(fname):
return open(os.path.join(os.path.dirname(__file__), fname)).read()
args = {"name":"data-maker","version":"1.5.4",
args = {"name":"data-maker","version":"1.5.5",
"author":"Vanderbilt University Medical Center","author_email":"steve.l.nyemba@vumc.org","license":"MIT",
"packages":find_packages(),"keywords":["healthcare","data","transport","protocol"]}
args["install_requires"] = ['data-transport@git+https://dev.the-phi.com/git/steve/data-transport.git','tensorflow']