""" This file will perform basic tasks to finalize the GAN process by performing the following : - basic stats & analytics - rebuild io to another dataset """ import pandas as pd import numpy as np from google.oauth2 import service_account from google.cloud import bigquery as bq from data.params import SYS_ARGS import json class Analytics : """ This class will compile basic analytics about a given dataset i.e compare original/synthetic """ @staticmethod def distribution(**args): context = args['context'] df = args['data'] # #-- This data frame counts unique values for each feature (space) df_counts = pd.DataFrame(df.apply(lambda col: col.unique().size),columns=['counts']).T # unique counts # #-- Get the distributions for common values # names = [name for name in df_counts.columns.tolist() if name.endswith('_io') == False] ddf = df.apply(lambda col: pd.DataFrame(col.values,columns=[col.name]).groupby([col.name]).size() ).fillna(0) ddf[context] = ddf.index pass def distance(**args): """ This function will measure the distance between """ df = args['data'] names = [name for name in df_counts.columns.tolist() if name.endswith('_io') == False] class Utils : class get : @staticmethod def config(**args) : contexts = args['contexts'].split(',') if type(args['contexts']) == str else args['contexts'] pipeline = args['pipeline'] return [ item for item in pipeline if item['context'] in contexts] @staticmethod def sql(**args) : """ This function is intended to build SQL query for the remainder of the table that was not synthesized :config configuration entries :from source of the table name :dataset name of the source dataset """ SQL = ["SELECT * FROM :from "] SQL_FILTER = [] NO_FILTERS_FOUND = True pipeline = Utils.get.config(**args) REVERSE_QUALIFIER = {'IN':'NOT IN','NOT IN':'IN','=':'<>','<>':'='} for item in pipeline : if 'filter' in item : if NO_FILTERS_FOUND : NO_FILTERS_FOUND = False SQL += ['WHERE'] # # Let us load the filter in the SQL Query FILTER = item['filter'] QUALIFIER = REVERSE_QUALIFIER[FILTER['qualifier'].upper()] SQL_FILTER += [" ".join([FILTER['field'], QUALIFIER,'(',FILTER['value'],')'])] src = ".".join([args['dataset'],args['from']]) SQL += [" AND ".join(SQL_FILTER)] # # let's pull the field schemas out of the table definition # return " ".join(SQL).replace(":from",src) def mk(**args) : dataset = args['dataset'] client = args['client'] if 'client' in args else bq.Client.from_service_account_file(args['private_key']) # # let us see if we have a dataset handy here # datasets = list(client.list_datasets()) found = [item for item in datasets if item.dataset_id == dataset] if not found : return client.create_dataset(dataset) return found[0] def move (**args): """ This function will move a table from the synthetic dataset into a designated location This is the simplest case for finalizing a synthetic data set :private_key """ private_key = args['private_key'] client = bq.Client.from_service_account_json(private_key) config = Utils.get.config(**args) dataset = args['dataset'] SQL = [ ''.join(["SELECT * FROM io.",item['context'],'_full_io']) for item in config] SQL += [Utils.get.sql(**args)] SQL = ('\n UNION ALL \n'.join(SQL).replace(':dataset','io')) # # At this point we have gathered all the tables in the io folder and we should now see if we need to merge with the remainder from the original table # odataset = mk(dataset=dataset+'_io',client=client) # SQL = "SELECT * FROM io.:context_full_io".replace(':context',context) config = bq.QueryJobConfig() config.destination = client.dataset(odataset.dataset_id).table(args['from']) config.use_query_cache = True config.allow_large_results = True config.priority = 'INTERACTIVE' # # schema = client.get_table(client.dataset(args['dataset']).table(args['from'])).schema fields = [" ".join(["CAST (",item.name,"AS",item.field_type.replace("INTEGER","INT64").replace("FLOAT","FLOAT64"),") ",item.name]) for item in schema] SQL = SQL.replace("*"," , ".join(fields)) # print (SQL) out = client.query(SQL,location='US',job_config=config) print (dir (out)) import pandas as pd import numpy as np from google.oauth2 import service_account import json # path = '../curation-prod.json' # credentials = service_account.Credentials.from_service_account_file(path) # df = pd.read_gbq("SELECT * FROM io.icd10_partial_io",credentials=credentials,dialect='standard') filename = 'config.json' if 'config' not in SYS_ARGS else SYS_ARGS['config'] f = open(filename) config = json.loads(f.read()) args = config['pipeline'] f.close() if __name__ == '__main__' : """ Usage : finalize -- --contexts --from """ if 'move' in SYS_ARGS : table = SYS_ARGS['from'] contexts = [item['context'] for item in config['pipeline'] if item['from'] == SYS_ARGS['from']] args = dict(config,**{"private_key":"../curation-prod.json"}) args = dict(args,**SYS_ARGS) args['contexts'] = contexts move(**args) else: print ("NOT YET READY !")