Merge pull request 'Adding nextcloud support' (#5) from nextcloud into dev
adding nextcloud support and minor bug fixes with sqlite Reviewed-on: https://dev.the-phi.com/git/library/data-transport/pulls/5
This commit is contained in:
Steve L. Nyemba
commit
f1fa4b93e8
2
setup.py
2
setup.py
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@ -17,7 +17,7 @@ args = {
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"license":"MIT",
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"packages":["transport"]}
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args["keywords"]=['mongodb','couchdb','rabbitmq','file','read','write','s3','sqlite']
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args["install_requires"] = ['pymongo','sqlalchemy<2.0.0','pandas','typer','pandas-gbq','numpy','cloudant','pika','nzpy','boto3','boto','pyarrow','google-cloud-bigquery','google-cloud-bigquery-storage','flask-session','smart_open','botocore','psycopg2-binary','mysql-connector-python']
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args["install_requires"] = ['pyncclient','pymongo','sqlalchemy<2.0.0','pandas','typer','pandas-gbq','numpy','cloudant','pika','nzpy','boto3','boto','pyarrow','google-cloud-bigquery','google-cloud-bigquery-storage','flask-session','smart_open','botocore','psycopg2-binary','mysql-connector-python']
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args["url"] = "https://healthcareio.the-phi.com/git/code/transport.git"
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args['scripts'] = ['bin/transport']
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if sys.version_info[0] == 2 :
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@ -64,7 +64,7 @@ class DiskWriter(Writer):
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def __init__(self,**params):
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super().__init__()
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self._path = params['path']
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self._delimiter = params['delimiter']
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self._delimiter = params['delimiter'] if 'delimiter' in params else None
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self._mode = 'w' if 'mode' not in params else params['mode']
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# def meta(self):
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# return self.cache['meta']
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@ -209,16 +209,19 @@ class SQLiteWriter(SQLite,DiskWriter) :
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"""
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"""
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if not self.fields :
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if type(info) == pd.DataFrame :
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_columns = list(info.columns)
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self.init(list(info.keys()))
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#if not self.fields :
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# #if type(info) == pd.DataFrame :
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# # _columns = list(info.columns)
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# #self.init(list(info.keys()))
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if type(info) == dict :
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info = [info]
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elif type(info) == pd.DataFrame :
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info = info.fillna('')
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info = info.to_dict(orient='records')
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if not self.fields :
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_rec = info[0]
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self.init(list(_rec.keys()))
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SQLiteWriter.LOCK.acquire()
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try:
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@ -0,0 +1,80 @@
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"""
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We are implementing transport to and from nextcloud (just like s3)
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"""
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import os
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import sys
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from transport.common import Reader,Writer
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import pandas as pd
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from io import StringIO
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import json
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import nextcloud_client as nextcloud
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class Nextcloud :
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def __init__(self,**_args):
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pass
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self._delimiter = None
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self._handler = nextcloud.Client(_args['url'])
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_uid = _args['uid']
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_token = _args['token']
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self._uri = _args['folder'] if 'folder' in _args else './'
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if self._uri.endswith('/') :
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self._uri = self._uri[:-1]
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self._file = None if 'file' not in _args else _args['file']
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self._handler.login(_uid,_token)
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def close(self):
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try:
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self._handler.logout()
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except Exception as e:
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pass
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class NextcloudReader(Nextcloud,Reader):
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def __init__(self,**_args):
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# self._file = [] if 'file' not in _args else _args['file']
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super().__init__(**_args)
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pass
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def read(self,**_args):
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_filename = self._file if 'file' not in _args else _args['file']
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#
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# @TODO: if _filename is none, an exception should be raised
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#
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_uri = '/'.join([self._uri,_filename])
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if self._handler.get_file(_uri) :
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#
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#
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_info = self._handler.file_info(_uri)
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_content = self._handler.get_file_contents(_uri).decode('utf8')
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if _info.get_content_type() == 'text/csv' :
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#
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# @TODO: enable handling of csv, xls, parquet, pickles
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_file = StringIO(_content)
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return pd.read_csv(_file)
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else:
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#
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# if it is neither a structured document like csv, we will return the content as is
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return _content
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return None
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class NextcloudWriter (Nextcloud,Writer):
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"""
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This class will write data to an instance of nextcloud
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"""
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def __init__(self,**_args) :
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super().__init__(**_args)
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self
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def write(self,_data,**_args):
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"""
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This function will upload a file to a given destination
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:file has the uri of the location of the file
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"""
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_filename = self._file if 'file' not in _args else _args['file']
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_uri = '/'.join([self._uri,_filename])
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if type(_data) == pd.DataFrame :
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f = StringIO()
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_data.to_csv(f,index=False)
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_content = f.getvalue()
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elif type(_data) == dict :
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_content = json.dumps(_data)
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else:
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_content = str(_data)
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self._handler.put_file_contents(_uri,_content)
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@ -10,6 +10,7 @@ from transport import etl as etl
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from transport import qlistener
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from transport import bricks
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from transport import session
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from transport import nextcloud
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import psycopg2 as pg
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import mysql.connector as my
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from google.cloud import bigquery as bq
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@ -34,7 +35,7 @@ MARIADB = 'mariadb'
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COUCHDB = 'couch'
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CONSOLE = 'console'
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ETL = 'etl'
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NEXTCLOUD = 'nextcloud'
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#
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# synonyms of the above
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@ -49,18 +50,19 @@ AWS_S3 = 's3'
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RABBIT = RABBITMQ
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QLISTENER = 'qlistener'
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QUEUE = QLISTENER
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DATABRICKS= 'databricks+connector'
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DRIVERS = {PG:pg,REDSHIFT:pg,MYSQL:my,MARIADB:my,NETEZZA:nz,SQLITE:sqlite3}
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CATEGORIES ={'sql':[NETEZZA,PG,MYSQL,REDSHIFT,SQLITE,MARIADB],'nosql':[MONGODB,COUCHDB],'cloud':[BIGQUERY,DATABRICKS],'file':[FILE],
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'queue':[RABBIT,QLISTENER],'memory':[CONSOLE,QLISTENER],'http':[HTTP]}
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CATEGORIES ={'sql':[NETEZZA,PG,MYSQL,REDSHIFT,SQLITE,MARIADB],'nosql':[MONGODB,COUCHDB],'cloud':[NEXTCLOUD,S3,BIGQUERY,DATABRICKS],'file':[FILE],
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'queue':[RABBIT,QLISTENER],'memory':[CONSOLE,QUEUE],'http':[HTTP]}
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READ = {'sql':sql.SQLReader,'nosql':{MONGODB:mongo.MongoReader,COUCHDB:couch.CouchReader},
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'cloud':{BIGQUERY:sql.BigQueryReader,DATABRICKS:bricks.BricksReader},
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'cloud':{BIGQUERY:sql.BigQueryReader,DATABRICKS:bricks.BricksReader,NEXTCLOUD:nextcloud.NextcloudReader},
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'file':disk.DiskReader,'queue':{RABBIT:queue.QueueReader,QLISTENER:qlistener.qListener},
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# 'cli':{CONSOLE:Console},'memory':{CONSOLE:Console},'http':session.HttpReader
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}
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WRITE = {'sql':sql.SQLWriter,'nosql':{MONGODB:mongo.MongoWriter,COUCHDB:couch.CouchWriter},
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'cloud':{BIGQUERY:sql.BigQueryWriter,DATABRICKS:bricks.BricksWriter},
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'cloud':{BIGQUERY:sql.BigQueryWriter,DATABRICKS:bricks.BricksWriter,NEXTCLOUD:nextcloud.NextcloudWriter},
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'file':disk.DiskWriter,'queue':{RABBIT:queue.QueueWriter,QLISTENER:qlistener.qListener},
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# 'cli':{CONSOLE:Console},
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# 'memory':{CONSOLE:Console}, 'http':session.HttpReader
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@ -70,6 +72,7 @@ WRITE = {'sql':sql.SQLWriter,'nosql':{MONGODB:mongo.MongoWriter,COUCHDB:couch.Co
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PROVIDERS = {
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FILE:{'read':disk.DiskReader,'write':disk.DiskWriter},
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SQLITE:{'read':disk.SQLiteReader,'write':disk.SQLiteWriter,'driver':sqlite3},
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'sqlite3':{'read':disk.SQLiteReader,'write':disk.SQLiteWriter,'driver':sqlite3},
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POSTGRESQL:{'read':sql.SQLReader,'write':sql.SQLWriter,'driver':pg,'default':{'host':'localhost','port':5432}},
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NETEZZA:{'read':sql.SQLReader,'write':sql.SQLWriter,'driver':nz,'default':{'port':5480}},
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@ -78,12 +81,16 @@ PROVIDERS = {
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MYSQL:{'read':sql.SQLReader,'write':sql.SQLWriter,'driver':my,'default':{'host':'localhost','port':3306}},
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MARIADB:{'read':sql.SQLReader,'write':sql.SQLWriter,'driver':my,'default':{'host':'localhost','port':3306}},
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S3:{'read':s3.s3Reader,'write':s3.s3Writer},
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BIGQUERY:{'read':sql.BigQueryReader,'write':sql.BigQueryWriter},
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DATABRICKS:{'read':bricks.BricksReader,'write':bricks.BricksWriter},
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NEXTCLOUD:{'read':nextcloud.NextcloudReader,'write':nextcloud.NextcloudWriter},
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QLISTENER:{'read':qlistener.qListener,'write':qlistener.qListener,'default':{'host':'localhost','port':5672}},
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CONSOLE:{'read':qlistener.Console,"write":qlistener.Console},
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HTTP:{'read':session.HttpReader,'write':session.HttpWriter},
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DATABRICKS:{'read':bricks.BricksReader,'write':bricks.BricksWriter},
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MONGODB:{'read':mongo.MongoReader,'write':mongo.MongoWriter,'default':{'port':27017,'host':'localhost'}},
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COUCHDB:{'read':couch.CouchReader,'writer':couch.CouchWriter,'default':{'host':'localhost','port':5984}},
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ETL :{'read':etl.Transporter,'write':etl.Transporter}
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@ -1,2 +1,2 @@
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__author__ = 'The Phi Technology'
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__version__= '1.9.0'
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__version__= '1.9.2'
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