101 lines
3.7 KiB
Python
101 lines
3.7 KiB
Python
|
"""
|
||
|
|
(c) 2019 Claims Toolkit,
|
||
|
|
Health Information Privacy Lab, Vanderbilt University Medical Center
|
||
|
|
|
||
|
|
Steve L. Nyemba <steve.l.nyemba@vanderbilt.edu>
|
||
|
|
Khanhly Nguyen <khanhly.t.nguyen@gmail.com>
|
||
|
|
|
||
|
|
|
||
|
|
This code is intended to process and parse healthcare x12 837 (claims) and x12 835 (remittances) into human readable JSON format.
|
||
|
|
The claims/outpout can be forwarded to a NoSQL Data store like couchdb and mongodb
|
||
|
|
Usage :
|
||
|
|
Commandline :
|
||
|
|
python edi --scope --config <path> --folder <path> --store <[mongo|disk|couch]> --<db|path]> <id|path>
|
||
|
|
|
||
|
|
with :
|
||
|
|
--scope <claims|remits>
|
||
|
|
--config path of the x12 to be parsed i.e it could be 835, or 837
|
||
|
|
--folder location of the files (they must be decompressed)
|
||
|
|
--store data store could be disk, mongodb, couchdb
|
||
|
|
--db|path name of the folder to store the output or the database name
|
||
|
|
|
||
|
|
Embedded in Code :
|
||
|
|
|
||
|
|
import edi.parser
|
||
|
|
import json
|
||
|
|
|
||
|
|
file = '/data/claim_1.x12'
|
||
|
|
conf = json.loads(open('config/837.json').read())
|
||
|
|
edi.parser.get_content(filename,conf)
|
||
|
|
"""
|
||
|
|
from params import SYS_ARGS
|
||
|
|
from transport import factory
|
||
|
|
from parser import *
|
||
|
|
import os
|
||
|
|
import json
|
||
|
|
import sys
|
||
|
|
if __name__ == '__main__' :
|
||
|
|
"""
|
||
|
|
The program was called from the command line thus we are expecting
|
||
|
|
parse in [claims,remits]
|
||
|
|
config os.sep.path.exists(path)
|
||
|
|
folder os.sep.path.exists(path)
|
||
|
|
store store ()
|
||
|
|
"""
|
||
|
|
p = len( set(['store','config','folder']) & set(SYS_ARGS.keys())) == 3 and ('db' in SYS_ARGS or 'path' in SYS_ARGS)
|
||
|
|
TYPE = {
|
||
|
|
'mongo':'mongo.MongoWriter',
|
||
|
|
'couch':'couch.CouchWriter',
|
||
|
|
'disk':'disk.DiskWriter'
|
||
|
|
}
|
||
|
|
INFO = {
|
||
|
|
'837':{'scope':'claims','section':'HL'},
|
||
|
|
'835':{'scope':'remits','section':'CLP'}
|
||
|
|
}
|
||
|
|
if p :
|
||
|
|
args = {}
|
||
|
|
scope = SYS_ARGS['config'][:-5].split(os.sep)[-1]
|
||
|
|
CONTEXT = INFO[scope]['scope']
|
||
|
|
#
|
||
|
|
# @NOTE:
|
||
|
|
# improve how database and data stores are handled.
|
||
|
|
if SYS_ARGS['store'] == 'couch' :
|
||
|
|
args = {'url': SYS_ARGS['url'] if 'url' in SYS_ARGS else 'http://localhost:5984'}
|
||
|
|
args['dbname'] = SYS_ARGS['db']
|
||
|
|
|
||
|
|
elif SYS_ARGS ['store'] == 'mongo':
|
||
|
|
args = {'host':SYS_ARGS['host']if 'host' in SYS_ARGS else 'localhost:27217'}
|
||
|
|
if SYS_ARGS['store'] in ['mongo','couch']:
|
||
|
|
args['dbname'] = SYS_ARGS['db'] if 'db' in SYS_ARGS else 'claims_outcomes'
|
||
|
|
args['doc'] = CONTEXT
|
||
|
|
|
||
|
|
TYPE = TYPE[SYS_ARGS['store']]
|
||
|
|
writer = factory.instance(type=TYPE,args=args)
|
||
|
|
logger = factory.instance(type=TYPE,args= dict(args,**{"doc":"logs"}))
|
||
|
|
files = os.listdir(SYS_ARGS['folder'])
|
||
|
|
CONFIG = json.loads(open(SYS_ARGS['config']).read())
|
||
|
|
SECTION= INFO[scope]['section']
|
||
|
|
for file in files :
|
||
|
|
if 'limit' in SYS_ARGS and files.index(file) == int(SYS_ARGS['limit']) :
|
||
|
|
break
|
||
|
|
else:
|
||
|
|
filename = os.sep.join([SYS_ARGS['folder'],file])
|
||
|
|
|
||
|
|
try:
|
||
|
|
content,logs = get_content(filename,CONFIG,SECTION)
|
||
|
|
except Exception as e:
|
||
|
|
if sys.version_info[0] > 2 :
|
||
|
|
logs = [{"filename":filename,"msg":e.args[0]}]
|
||
|
|
else:
|
||
|
|
logs = [{"filename":filename,"msg":e.message}]
|
||
|
|
content = None
|
||
|
|
if content :
|
||
|
|
writer.write(row= content)
|
||
|
|
if logs:
|
||
|
|
|
||
|
|
logger.write(row=logs)
|
||
|
|
|
||
|
|
pass
|
||
|
|
else:
|
||
|
|
print (__doc__)
|