hiplab/parser
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parser
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feature: added support for custom configuration

This commit is contained in:
Steve Nyemba 2020-12-21 23:31:04 -06:00
parent 2beddab6b4
commit 027824649f
2 changed files with 6 additions and 19 deletions
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20
README.md
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@ -22,21 +22,7 @@ We wrote this frame to be used in both command line or as a library within in yo
pip install --upgrade git+https://hiplab.mc.vanderbilt.edu/git/lab/parse-edi.git pip install --upgrade git+https://hiplab.mc.vanderbilt.edu/git/lab/parse-edi.git
## Usage ## Usage
cli:
healthcare-io.py --<[signup|init]> <email> --store <sqlite|mongo> [--batch <value>]
healthcare-io.py --parse --folder <path> [--batch <value>] [--resume]
healthcare-io.py --check-update
action :
--signup|init signup user and get configuration file
--parse starts parsing
--check checks for updates
parameters :
--<[signup|init]> signup or get a configuration file from a parsing server
--folder location of the files (the program will recursively traverse it)
--store data store mongo or sqlite or mongodb
--resume will attempt to resume if there was an interruption
**cli :** **cli :**
1. signup to get parsing configuration 1. signup to get parsing configuration
@ -50,12 +36,12 @@ We wrote this frame to be used in both command line or as a library within in yo
Occasionally the attributes in the configuration file may change, This function will determine if there is a new version available. Occasionally the attributes in the configuration file may change, This function will determine if there is a new version available.
healthcare-io.py --check-update healthcare-io.py --check-update
3. parsing data in a folder 3. parsing data in a folder
The parser will recursively traverse a directory with claims and or remittances The parser will recursively traverse a directory with claims and or remittances
healthcare-io.py --parse <claims|remits> --folder <path> [--batch <n>] [--resume] healthcare-io.py --parse --folder <path> [--batch <n>] [--resume]
with : with :
--parse tells the engine what to parse claims or remits --parse tells the engine what to parse claims or remits

5
setup.py
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@ -8,14 +8,15 @@ import sys
def read(fname): def read(fname):
return open(os.path.join(os.path.dirname(__file__), fname)).read() return open(os.path.join(os.path.dirname(__file__), fname)).read()
args = { args = {
"name":"healthcareio","version":"1.4.4", "name":"healthcareio","version":"1.4.6",
"author":"Vanderbilt University Medical Center", "author":"Vanderbilt University Medical Center",
"author_email":"steve.l.nyemba@vumc.org", "author_email":"steve.l.nyemba@vumc.org",
"include_package_data":True,
"license":"MIT", "license":"MIT",
"packages":find_packages(), "packages":find_packages(),
"keywords":["healthcare","edi","x12","analytics","835","837","data","transport","protocol"] "keywords":["healthcare","edi","x12","analytics","835","837","data","transport","protocol"]
} }
args["install_requires"] = ['flask-socketio','seaborn','jinja2', 'weasyprint','data-transport@git+https://dev.the-phi.com/git/steve/data-transport.git','pymongo','numpy','cloudant','pika','boto','flask-session','smart_open','smart-top@git+https://dev.the-phi.com/git/steve/monitor.git@data-collector'] args["install_requires"] = ['flask-socketio','seaborn','jinja2','jsonmerge', 'weasyprint','data-transport@git+https://healthcareio.the-phi.com/git/code/transport.git','pymongo','numpy','cloudant','pika','boto','botocore','flask-session','smart_open','smart-top@git+https://healthcareio.the-phi.com/git/code/smart-top.git@data-collector']
args['url'] = 'https://hiplab.mc.vanderbilt.edu' args['url'] = 'https://hiplab.mc.vanderbilt.edu'
args['scripts']= ['healthcareio/healthcare-io.py'] args['scripts']= ['healthcareio/healthcare-io.py']
# args['entry_points'] = { # args['entry_points'] = {