hiplab/parser
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bug fix: export uses newer data-transport

This commit is contained in:
Steve Nyemba 2022-06-26 12:12:32 -05:00
parent 5d7aa7cd81
commit 1801e3a85d
1 changed files with 10 additions and 3 deletions
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13
healthcareio/export/export.py
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@ -191,6 +191,7 @@ def init_sql(**_args):
_config = jsonmerge.merge(_config,CUSTOM_CONFIG[TYPE])
#
_info = meta(_config)
_projectSQLite = [] #-- sqlite projection
for field_name in _info['main'] :
_projectSQLite += ["json_extract(data,'$."+field_name+"') "+field_name]
@ -211,12 +212,17 @@ def init_sql(**_args):
SQL = "SELECT DISTINCT :fields FROM "+TABLE_NAME+", json_each(data) x, json_each(x.value) i where x.key = ':table'"
SQL = SQL.replace(":table",table).replace(":fields",",".join(project))
r += [{"table":table,"read":{"sql":SQL},"sql":create(table=table,key='claim_id',fields=fields)}]
return r
def init(**_args):
if 'provider' in CONFIG['store'] and CONFIG['store']['provider'] == 'sqlite' :
return init_sql(**_args)
else:
# if 'provider' in CONFIG['store'] and CONFIG['store']['provider'] == 'sqlite' :
# return init_sql(**_args)
# else:
# return init_mongo(**_args)
if ('provider' in CONFIG['store'] and CONFIG['store']['provider'] == 'mongo') or ('type' in CONFIG['store'] and 'mongo' in CONFIG['store']['type']):
return init_mongo(**_args)
else:
return init_sql(**_args)
def init_mongo (**_args) :
"""
This function is intended to determine the number of tables to be created, as well as their type.
@ -330,6 +336,7 @@ class Factory:
job_args = init(type=X12_TYPE) #-- getting the queries that will generate the objects we are interested in
# print (json.dumps(job_args))
_jobs = []
for row in job_args:
# _store = json.loads(json.dumps(wstore))
_store = copy.deepcopy(wstore)