hiplab/parser
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parser
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bug fix .. top row stuff

This commit is contained in:
Steve Nyemba 2021-02-15 22:36:23 -06:00
parent c7b4341621
commit 45ac94bfc4
2 changed files with 45 additions and 22 deletions
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65
healthcareio/x12/__init__.py
View File

@ -437,7 +437,7 @@ class Parser (Process):
# #
# Let's parse this for default values # Let's parse this for default values
return value # jsonmerge.merge(value,self.apply(content,_code)) return jsonmerge.merge(value,self.apply(content,_code))
def read(self,filename) : def read(self,filename) :
""" """
@ -452,15 +452,42 @@ class Parser (Process):
claims = [] claims = []
try: try:
file = open(filename.strip(),errors='ignore') file = open(filename.strip(),errors='ignore')
INITIAL_ROWS = list(islice(file,4)) #.readlines(4) INITIAL_ROWS = list(islice(file,100)) #.readlines(4)
_code = "unknown" _code = "unknown"
# if len(INITIAL_ROWS) == 1 :
# file = INITIAL_ROWS[0].split('~')
# INITIAL_ROWS = file[:4]
# if len(INITIAL_ROWS) < 3 :
# return None,[{"name":filename,"completed":False}],None
# _code = INITIAL_ROWS[2].split('*')[1].strip()
# section = self.config[_code][0]['SECTION'].strip()
# INITIAL_ROWS = file.read().readlines()
if len(INITIAL_ROWS) == 1 : if len(INITIAL_ROWS) == 1 :
file = INITIAL_ROWS[0].split('~') INITIAL_ROWS = INITIAL_ROWS[0].split('~')
INITIAL_ROWS = file[:4] else:
if len(INITIAL_ROWS) < 3 : file.seek(0)
return None,[{"name":filename,"completed":False}],None
_code = INITIAL_ROWS[2].split('*')[1].strip()
section = self.config[_code][0]['SECTION'].strip() _code = INITIAL_ROWS[2].split('*')[1].strip() #-- x12 standard would have the code positiond here
section = self.config[_code][0]['SECTION'].strip() #-- This is either CLM or CLP
# INITIAL_ROWS =
# _code = INITIAL_ROWS[2].split('*')[1].strip()
for row in INITIAL_ROWS :
if section in row :
index = INITIAL_ROWS.index(row)
#-- The order here will matter because the initial rows will contain the entire file
# Assign this to the file object and move forward by making sure initial_rows are actually initial rows
#
file = INITIAL_ROWS[index:]
INITIAL_ROWS = INITIAL_ROWS[:index]
break
# print ([_code,section])
# print (self.get.default_value(INITIAL_ROWS,_code))
# #
# adjusting the # adjusting the
DEFAULT_VALUE = self.get.default_value(INITIAL_ROWS,_code) DEFAULT_VALUE = self.get.default_value(INITIAL_ROWS,_code)
@ -473,10 +500,11 @@ class Parser (Process):
_toprows = [] _toprows = []
_default = None _default = None
for row in file : for row in file :
row = row.replace('\r','') row = row.replace('\r','')
if not segment and not row.startswith(section): # if not segment and not row.startswith(section):
_toprows += [row] # _toprows += [row]
if row.startswith(section) and not segment: if row.startswith(section) and not segment:
segment = [row] segment = [row]
@ -484,13 +512,7 @@ class Parser (Process):
continue continue
elif segment and not row.startswith(section): elif segment and not row.startswith(section):
if not _default :
#
# NOTE:
# Some information in the toprows can be available and applied to claims that do not have this
# This holds true for dates, N1, NM1 segments
_default = (self.apply(_toprows,_code))
DEFAULT_VALUE = dict(DEFAULT_VALUE,**_default)
segment.append(row) segment.append(row)
@ -512,7 +534,7 @@ class Parser (Process):
else: else:
schema = {} schema = {}
merger = jsonmerge.Merger(schema) merger = jsonmerge.Merger(schema)
claims.append( merger.merge(DEFAULT_VALUE,_claim)) claims.append( merger.merge(DEFAULT_VALUE.copy(),_claim))
segment = [row] segment = [row]
index += 1 index += 1
@ -520,8 +542,9 @@ class Parser (Process):
pass pass
# #
# Handling the last claim found # Handling the last claim found
if segment[0].startswith(section) : if segment[0].startswith(section) :
default_claim = dict({"name":index},**DEFAULT_VALUE) # default_claim = dict({"name":index},**DEFAULT_VALUE)
claim = self.apply(segment,_code) claim = self.apply(segment,_code)
if claim : if claim :
@ -535,7 +558,7 @@ class Parser (Process):
merger = jsonmerge.Merger(schema) merger = jsonmerge.Merger(schema)
# top_row_claim = self.apply(_toprows,_code) # top_row_claim = self.apply(_toprows,_code)
claim = merger.merge(claim,self.apply(_toprows,_code)) # claim = merger.merge(claim,self.apply(_toprows,_code))
# claims.append(dict(DEFAULT_VALUE,**claim)) # claims.append(dict(DEFAULT_VALUE,**claim))
claims.append(merger.merge(DEFAULT_VALUE,claim)) claims.append(merger.merge(DEFAULT_VALUE,claim))
if type(file) != list : if type(file) != list :

2
setup.py
View File

@ -8,7 +8,7 @@ import sys
def read(fname): def read(fname):
return open(os.path.join(os.path.dirname(__file__), fname)).read() return open(os.path.join(os.path.dirname(__file__), fname)).read()
args = { args = {
"name":"healthcareio","version":"1.6.2.10", "name":"healthcareio","version":"1.6.2.12",
"author":"Vanderbilt University Medical Center", "author":"Vanderbilt University Medical Center",
"author_email":"steve.l.nyemba@vumc.org", "author_email":"steve.l.nyemba@vumc.org",
"include_package_data":True, "include_package_data":True,