documentation
This commit is contained in:
Steve Nyemba
parent
d8f6b84951
commit
a2f163c0f6
66
README.md
66
README.md
|
|
@ -8,27 +8,42 @@ We wrote this frame to be used in both command line or as a library within in yo
|
|||
|
||||
## Features
|
||||
|
||||
| Features | |
|
||||
| Features | Description|
|
||||
| -------- | --- |
|
||||
|X12 claims/remits| parsing of {x12} claims/remittances into JSON format with human readible attributes|
|
||||
|Multi Processing| capable of processing multiple files simultaneously to speed up processing|
|
||||
|Analytics support| descriptive statistical analytics : distribution, various counts|
|
||||
|Process Recovery| capable of recovering interrupted runs|
|
||||
|Export to RDBMS| exports data to relational format (NoSQL -> SQL) 7 supported databases <br> * PostgreSQL,<br> * Redshift, <br>* Neteeza, <br>* Mysql, <br>* Mariadb, <br>* bigquery, <br>* sqlite3 |
|
||||
|**Issues and Bug reports**| info@the-phi.com
|
||||
|
||||
|
||||
For advanced features visit [Healthcare/IO::Parser](https://healthcareio.the-phi.com/parser) homepage
|
||||
|
||||
|
||||
## Installation
|
||||
|
||||
**System requirements**
|
||||
|
||||
- git (latest cli)
|
||||
- python3+ (with virtualenv)
|
||||
- mongodb (optional)
|
||||
|
||||
**Installation command**
|
||||
|
||||
pip install --upgrade git+https://hiplab.mc.vanderbilt.edu/git/lab/parse-edi.git
|
||||
|
||||
## Usage
|
||||
|
||||
**cli :**
|
||||
Healthcare/IO is primarily intended to be used as a command line parser (for now). It is fully written in python 3+
|
||||
|
||||
**CLI :**
|
||||
|
||||
1. signup to get parsing configuration
|
||||
|
||||
The parser is driven by a configuration file that specifies fields to parse and how to parse them. You need by signing up, to get a copy of the configuration file.
|
||||
|
||||
#
|
||||
# Use sqlite as data-store
|
||||
healthcare-io.py --signup <email> [--store <mongo|sqlite>]
|
||||
|
||||
2. check version
|
||||
|
|
@ -37,7 +52,7 @@ We wrote this frame to be used in both command line or as a library within in yo
|
|||
|
||||
healthcare-io.py --check-update
|
||||
|
||||
3. parsing data in a folder
|
||||
3. parsing data stored in a folder
|
||||
|
||||
The parser will recursively traverse a directory with claims and or remittances
|
||||
|
||||
|
|
@ -54,11 +69,15 @@ We wrote this frame to be used in both command line or as a library within in yo
|
|||
|
||||
The parser will export data into other data-stores as a relational tables allowing users to construct views to support a variety of studies.
|
||||
|
||||
healthcare-io.py --export <835|837> --config <path-export.json>
|
||||
healthcare-io.py --export <835|837> --export-config <path-export.json>
|
||||
|
||||
with:
|
||||
--config configuration to support data-store
|
||||
--export-config configuration to support data-store
|
||||
|
||||
**example**
|
||||
1. Exporting to PostgreSQL
|
||||
|
||||
{"provider":"postgresql","database":"healthcareio","schema":"foo"}
|
||||
|
||||
**NOTE**
|
||||
|
||||
|
|
@ -69,41 +88,46 @@ We wrote this frame to be used in both command line or as a library within in yo
|
|||
|
||||
{
|
||||
"provider":"<postgresql|redshift|mysql|mariadb>",
|
||||
"db":"mydatabase",
|
||||
[
|
||||
"host":"server-name","port":5432,
|
||||
"user":"me","password":"!@#z4qm",
|
||||
"schema":"target-schema"
|
||||
]
|
||||
"database":"<name>",["host":"server-name"],["port":5432],
|
||||
["user":"me"],["password":"!@#z4qm"],["schema":"target-schema"]
|
||||
|
||||
}
|
||||
|
||||
**parameters:**
|
||||
|
||||
provider postgresql,redshift,mysql or mariadb (supported providers)
|
||||
db name of the database
|
||||
database name of the database
|
||||
|
||||
**optional:**
|
||||
|
||||
schema name of the target schema. If not provided we will assume the default
|
||||
host host of the database. If not provided assuming localhost
|
||||
port port value of the database if not provided the default will be used
|
||||
user database user name. If not provided we assume security settings to trust
|
||||
password password of database user. If not set we assume security settings to trust
|
||||
|
||||
**Embedded in Code :**
|
||||
**Known Limitations**
|
||||
|
||||
The Healthcare/IO **parser** can be used within your code base as a library and handle storing data in a data store of choice
|
||||
1. By default it does NOT come with all {X12} Segments.
|
||||
2. Does not support an easy way to rename attributes it parses
|
||||
3. For now can only read {x12} from disk
|
||||
|
||||
import healthcareio
|
||||
There is support for additional features and attributes available at [Healthcare/IO::Parser](https://healthcareio.the-phi.com/parser).
|
||||
|
||||
**In development**
|
||||
|
||||
1. Wizard/UI to enable attribute renaming
|
||||
2. Dashboard for quick overview
|
||||
3. Reading {x12} from s3 and other cloud buckets
|
||||
4. Docker Image
|
||||
|
||||
## Credits
|
||||
|
||||
This project was realized thanks largely to the effort of Vanderbilt University Medical Center and
|
||||
|
||||
* [Khanhly Nguyen] (<khanhly.t.nguyen@gmail.com>)
|
||||
* [Gaylon Stanley] (<gaylon.stanley@vumc.org>)
|
||||
* [Cheng Gao] (<cheng.gao@vanderbilt.edu>)
|
||||
* [Brad Malin] (brad.malin@vanderbilt.edu)
|
||||
* [Steve L. Nyemba] (<steve.l.nyemba@vumc.org>)
|
||||
| | | |
|
||||
|--|--|--|
|
||||
|- Khanhly Nguyen<br>- Heather Dunn<br>- Nina Thousand|- Byun Kang<br>- Gaylon Stanley<br>- Cheng Gao|- Thomas Brown<br>- Brad Malin<br>- Steve Nyemba
|
||||
|
||||
|
||||
|
||||
|
|
|
|||
Loading…
Reference in New Issue