Merge remote-tracking branch 'origin/dev'
This commit is contained in:
Steve Nyemba
commit
f25a5831c0
60
README.md
60
README.md
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@ -22,16 +22,26 @@ We wrote this frame to be used in both command line or as a library within in yo
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pip install --upgrade git+https://hiplab.mc.vanderbilt.edu/git/lab/parse-edi.git
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## Usage
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**cli :**
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1. signup to get parsing configuration
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healthcare-io.py --signup <email> [--store <mongo|sqlite>]
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2. parsing claims in a folder
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The parser is driven by a configuration file that specifies fields to parse and how to parse them. You need by signing up, to get a copy of the configuration file.
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healthcare-io.py --parse <claims|remits> --folder <path> [--batch <n>] [--resume]
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healthcare-io.py --signup <email> [--store <mongo|sqlite>]
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2. check version
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Occasionally the attributes in the configuration file may change, This function will determine if there is a new version available.
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healthcare-io.py --check-update
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3. parsing data in a folder
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The parser will recursively traverse a directory with claims and or remittances
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healthcare-io.py --parse --folder <path> [--batch <n>] [--resume]
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with :
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--parse tells the engine what to parse claims or remits
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@ -39,12 +49,42 @@ We wrote this frame to be used in both command line or as a library within in yo
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--batch number of processes to spawn to parse the files
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--resume tells the parser to resume parsing
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if all files weren't processed or new files were added into the folder
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3. dashboard
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There is a built-in dashboard that has displays descriptive analytics in a web browser
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healthcare-io.py --server <port> [--context <name>]
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4. export data to a relational data-store
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The parser will export data into other data-stores as a relational tables allowing users to construct views to support a variety of studies.
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healthcare-io.py --export <835|837> --config <path-export.json>
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with:
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--config configuration to support data-store
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The configuration file needed to implement export is modelled after the following template:
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{
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"provider":"<postgresql|redshift|mysql|mariadb>",
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"db":"mydatabase",
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[
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"host":"server-name","port":5432,
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"user":"me","password":"!@#z4qm",
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"schema":"target-schema"
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]
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}
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**parameters:**
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provider postgresql,redshift,mysql or mariadb (supported providers)
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db name of the database
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**optional:**
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schema name of the target schema. If not provided we will assume the default
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host host of the database. If not provided assuming localhost
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port port value of the database if not provided the default will be used
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user database user name. If not provided we assume security settings to trust
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password password of database user. If not set we assume security settings to trust
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**Embedded in Code :**
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The Healthcare/IO **parser** can be used within your code base as a library and handle storing data in a data store of choice
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@ -1,4 +1,8 @@
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FROM ubuntu:bionic-20200403
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#
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# Let us create an image for healthcareio
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# The image will contain the {X12} Parser and the
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# FROM ubuntu:bionic-20200403
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FROM ubuntu:focal
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RUN ["apt","update","--fix-missing"]
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RUN ["apt-get","upgrade","-y"]
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@ -6,9 +10,22 @@ RUN ["apt-get","-y","install","apt-utils"]
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RUN ["apt","update","--fix-missing"]
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RUN ["apt-get","upgrade","-y"]
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RUN ["apt-get","install","-y","sqlite3","sqlite3-pcre","libsqlite3-dev","python3-dev","python3","python3-pip","git","python3-virtualenv"]
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RUN ["apt-get","install","-y","mongo","sqlite3","sqlite3-pcre","libsqlite3-dev","python3-dev","python3","python3-pip","git","python3-virtualenv","wget"]
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#
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#
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RUN ["pip3","install","--upgrade","pip"]
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# RUN ["pip3","install","git+https://healthcare.the-phi.com/git/code/parser.git","botocore"]
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USER health-user
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#
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# This volume is where the data will be loaded from (otherwise it is assumed the user will have it in the container somehow)
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#
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VOLUME ["/data"]
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#
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# This is the port from which some degree of monitoring can/will happen
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EXPOSE 80
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# wget https://healthcareio.the-phi.com/git/code/parser.git/bootup.sh
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COPY bootup.sh bootup.sh
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ENTRYPOINT ["bash","-C"]
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CMD ["bootup.sh"]
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# VOLUME ["/home/health-user/healthcare-io/","/home-healthuser/.healthcareio"]
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# RUN ["pip3","install","git+https://healthcareio.the-phi.com/git"]
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# RUN ["pip3","install","git+https://healthcareio.the-phi.com/git"]
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@ -16,5 +16,9 @@ Usage :
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"""
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from healthcareio import analytics
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from healthcareio import server
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from healthcareio import export
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import healthcareio.x12 as x12
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import healthcareio.params as params
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# from healthcareio import server
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@ -11,7 +11,7 @@ import transport
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import matplotlib.pyplot as plt
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import re, base64
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# from weasyprint import HTML, CSS
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COLORS = ["#f79256","#7dcfb6","#fbd1a2","#00b2ca","#1d4e89","#4682B4","#c5c3c6","#4c5c68","#1985a1","#f72585","#7209b7","#3a0ca3","#4361ee","#4cc9f0","#ff595e","#ffca3a","#8ac926","#1982c4","#6a4c93"]
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COLORS = ["#fbd1a2","#00b2ca","#1d4e89","#4682B4","#c5c3c6","#4c5c68","#1985a1","#f72585","#7209b7","#3a0ca3","#4361ee","#4cc9f0","#ff595e","#ffca3a","#8ac926","#1982c4","#6a4c93"]
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class stdev :
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def __init__(self) :
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self.values = []
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@ -149,11 +149,16 @@ class Apex :
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This class will format a data-frame to work with Apex charting engine
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"""
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@staticmethod
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def apply(item):
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def apply(item,theme={'mode':'light','palette':'palette6'}):
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pointer = item['chart']['type']
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if hasattr(Apex,pointer) :
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pointer = getattr(Apex,pointer)
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options = pointer(item)
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if 'apex' in options and 'colors' in options['apex'] :
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del options['apex']['colors']
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if 'apex' in options :
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options['apex']['theme'] = theme
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options['responsive']= [
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{
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'breakpoint': 1,
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@ -168,6 +173,18 @@ class Apex :
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print ("Oops")
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pass
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@staticmethod
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def radial(item):
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df = item['data']
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x = item['chart']['axis']['x']
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y = item['chart']['axis']['y']
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labels = df[y].tolist()
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values = [float(np.round(value,2)) for value in df[x].tolist()]
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chart = {"type":"radialBar","height":200}
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option = {"chart":chart,"series":values,"labels":labels,"plotOptions":{"radialBar":{"hollow":{"size":"70%"}}}}
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return {'apex':option}
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@staticmethod
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def scatter(item):
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options = Apex.spline(item)
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options['apex']['chart']['type'] = 'scatter'
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@ -175,7 +192,7 @@ class Apex :
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@staticmethod
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def scalar(item):
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_df = item['data']
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print (_df)
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name = _df.columns.tolist()[0]
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value = _df[name].values.round(2)[0]
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html = '<div class="scalar"><div class="value">:value</div><div class="label">:label</div></div>'
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@ -235,16 +252,17 @@ class Apex :
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@TODO: alias this with bar (!= column)
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"""
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df = item['data']
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N = df.shape[0] if df.shape[0] < 10 else 10
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axis = item['chart']['axis']
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y = axis['y']
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if type(y) == list :
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y = y[0]
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axis['x'] = [axis['x']] if type(axis['x']) != list else axis['x']
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if not set(axis['x']) & set(df.columns.tolist()) :
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print (set(axis['x']) & set(df.columns.tolist()))
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print (axis['x'])
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print (df.columns)
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# if not set(axis['x']) & set(df.columns.tolist()) :
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# print (set(axis['x']) & set(df.columns.tolist()))
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# print (axis['x'])
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# print (df.columns)
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# df.columns = axis['x']
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series = []
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_min=_max = 0
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@ -294,7 +312,6 @@ class Apex :
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values are x-axis
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"""
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df = item['data']
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if df.shape [0]> 1 :
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y_cols,x_cols = item['chart']['axis']['y'],item['chart']['axis']['x']
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labels = df[y_cols].values.tolist()
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@ -302,10 +319,11 @@ class Apex :
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values = df[x_cols].values.round(2).tolist()
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else:
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labels = [name.upper().replace('_',' ') for name in df.columns.tolist()]
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df = df.astype(float)
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values = df.values.round(2).tolist()[0] if df.shape[1] > 1 else df.values.round(2).tolist()
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colors = COLORS[:len(values)]
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options = {"series":values,"colors":colors,"labels":labels,"chart":{"type":"donut"},"plotOptions":{"pie":{"customScale":.8}},"legend":{"position":"right"}}
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options = {"series":values,"colors":colors,"labels":labels,"dataLabels":{"enabled":True,"style":{"colors":["#000000"]},"dropShadow":{"enabled":False}},"chart":{"type":"donut","width":200},"plotOptions":{"pie":{"customScale":.9}},"legend":{"position":"right"}}
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return {"apex":options}
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pass
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|
@ -329,43 +347,117 @@ class engine :
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_args['type'] = 'mongo.MongoReader'
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||||
else:
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_args['type'] = 'disk.SQLiteReader'
|
||||
self.reader = transport.factory.instance(**_args)
|
||||
self.store_config = _args ;
|
||||
|
||||
def filter (self,**args):
|
||||
"""
|
||||
type: claims or remits
|
||||
filter optional identifier claims, procedures, taxonomy, ...
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||||
"""
|
||||
|
||||
|
||||
_m = {'claim':'837','claims':'837','remits':'835','remit':'835'}
|
||||
table = _m[ args['type']]
|
||||
_analytics = self.info[table]
|
||||
if 'index' in args :
|
||||
index = int(args['index'])
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_analytics = [_analytics[index]]
|
||||
|
||||
_info = list(_analytics) #if 'filter' not in args else [item for item in analytics if args['filter'] == item['id']]
|
||||
# conn = lite.connect(self.store_config['args']['path'],isolation_level=None)
|
||||
# conn.create_aggregate("stdev",1,stdev)
|
||||
DB_TYPE = 'mongo' if (type(self.reader) == transport.mongo.MongoReader) else 'sql'
|
||||
if DB_TYPE == 'mongo' :
|
||||
self.store_config['args']['doc'] = args['type']
|
||||
|
||||
self.reader = transport.factory.instance(**self.store_config)
|
||||
r = []
|
||||
for row in _info :
|
||||
pipeline = row['pipeline']
|
||||
|
||||
index = 0
|
||||
for item in pipeline:
|
||||
if not item[DB_TYPE] :
|
||||
continue
|
||||
query = {DB_TYPE:item[DB_TYPE]}
|
||||
|
||||
df = pd.DataFrame(self.reader.read(**query)) #item)
|
||||
df = df.fillna('N/A')
|
||||
# item['data'] = df
|
||||
chart = item['chart']
|
||||
pipe = {"data":df,"chart":chart}
|
||||
for key in list(item.keys()) :
|
||||
if key not in ["chart","data","mongo","sql","couch"] :
|
||||
pipe[key] = item[key]
|
||||
|
||||
|
||||
|
||||
|
||||
r.append(pipe)
|
||||
self.reader.close()
|
||||
return {"id":_info[0]['id'],'pipeline':r}
|
||||
|
||||
def apply (self,**args) :
|
||||
"""
|
||||
type: claims or remits
|
||||
filter optional identifier claims, procedures, taxonomy, ...
|
||||
"""
|
||||
|
||||
|
||||
_m = {'claim':'837','claims':'837','remits':'835','remit':'835'}
|
||||
# key = '837' if args['type'] == 'claims' else '835'
|
||||
table = _m[ args['type']]
|
||||
analytics = self.info[table]
|
||||
|
||||
_analytics = self.info[table]
|
||||
if 'index' in args :
|
||||
index = int(args['index'])
|
||||
analytics = [analytics[index]]
|
||||
_analytics = [_analytics[index]]
|
||||
|
||||
_info = list(analytics) if 'filter' not in args else [item for item in analytics if args['filter'] == item['id']]
|
||||
_info = list(_analytics) if 'filter' not in args else [item for item in analytics if args['filter'] == item['id']]
|
||||
# conn = lite.connect(self.store_config['args']['path'],isolation_level=None)
|
||||
# conn.create_aggregate("stdev",1,stdev)
|
||||
DB_TYPE = 'mongo' if (type(self.reader) == transport.mongo.MongoReader) else 'sql'
|
||||
#
|
||||
# @TODO: Find a better way to handle database variance
|
||||
#
|
||||
# DB_TYPE = 'mongo' if (type(self.reader) == transport.mongo.MongoReader) else 'sql'
|
||||
|
||||
if 'mongo' in self.store_config['type'] :
|
||||
DB_TYPE='mongo'
|
||||
else:
|
||||
DB_TYPE='sql'
|
||||
self.store_config['args']['table'] = args['type']
|
||||
|
||||
self.reader = transport.factory.instance(**self.store_config)
|
||||
r = []
|
||||
for row in _info :
|
||||
|
||||
for item in row['pipeline'] :
|
||||
pipeline = row['pipeline']
|
||||
index = 0
|
||||
for item in pipeline:
|
||||
# item['data'] = pd.read_sql(item['sql'],conn)
|
||||
query = {DB_TYPE:item[DB_TYPE]}
|
||||
item['data'] = self.reader.read(**item)
|
||||
# query = {DB_TYPE:item[DB_TYPE]}
|
||||
query = item[DB_TYPE]
|
||||
if not query :
|
||||
continue
|
||||
if DB_TYPE == 'sql' :
|
||||
query = {"sql":query}
|
||||
|
||||
item['data'] = self.reader.read(**query) #item)
|
||||
if 'serialize' in args :
|
||||
|
||||
item['data'] = json.dumps(item['data'].to_dict(orient='record')) if type(item['data']) == pd.DataFrame else item['data']
|
||||
# item['data'] = json.dumps(item['data'].to_dict(orient='record')) if type(item['data']) == pd.DataFrame else item['data']
|
||||
item['data'] = json.dumps(item['data'].to_dict('record')) if type(item['data']) == pd.DataFrame else item['data']
|
||||
else:
|
||||
item['data'] = (pd.DataFrame(item['data']))
|
||||
|
||||
pipeline[index] = item
|
||||
index += 1
|
||||
#
|
||||
#
|
||||
row['pipeline']= pipeline
|
||||
|
||||
# if 'info' in item:
|
||||
# item['info'] = item['info'].replace(":rows",str(item["data"].shape[0]))
|
||||
# conn.close()
|
||||
|
||||
self.reader.close()
|
||||
return _info
|
||||
|
||||
def _html(self,item) :
|
||||
|
|
|
|||
|
|
@ -0,0 +1,37 @@
|
|||
#
|
||||
# Let us create an image for healthcareio
|
||||
# The image will contain the {X12} Parser and the
|
||||
# FROM ubuntu:bionic-20200403
|
||||
FROM ubuntu:focal
|
||||
RUN ["apt-get","update","--fix-missing"]
|
||||
RUN ["apt-get","upgrade","-y"]
|
||||
|
||||
RUN ["apt-get","-y","install","apt-utils"]
|
||||
|
||||
RUN ["apt-get","update","--fix-missing"]
|
||||
RUN ["apt-get","upgrade","-y"]
|
||||
RUN ["apt-get","install","-y","mongodb","sqlite3","sqlite3-pcre","libsqlite3-dev","python3-dev","python3","python3-pip","git","python3-virtualenv","wget"]
|
||||
#
|
||||
#
|
||||
RUN ["pip3","install","--upgrade","pip"]
|
||||
RUN ["pip3","install","numpy","pandas","git+https://dev.the-phi.com/git/steve/data-transport","botocore","matplotlib"]
|
||||
# RUN ["pip3","install","git+https://healthcare.the-phi.com/git/code/parser.git","botocore"]
|
||||
# RUN ["useradd", "-ms", "/bin/bash", "health-user"]
|
||||
# USER health-user
|
||||
#
|
||||
# This volume is where the data will be loaded from (otherwise it is assumed the user will have it in the container somehow)
|
||||
#
|
||||
VOLUME ["/data","/app/healthcareio"]
|
||||
WORKDIR /app
|
||||
ENV PYTHONPATH="/app"
|
||||
|
||||
#
|
||||
# This is the port from which some degree of monitoring can/will happen
|
||||
EXPOSE 80
|
||||
EXPOSE 27017
|
||||
# wget https://healthcareio.the-phi.com/git/code/parser.git/bootup.sh
|
||||
COPY bootup.sh bootup.sh
|
||||
ENTRYPOINT ["bash","-C"]
|
||||
CMD ["bootup.sh"]
|
||||
# VOLUME ["/home/health-user/healthcare-io/","/home-healthuser/.healthcareio"]
|
||||
# RUN ["pip3","install","git+https://healthcareio.the-phi.com/git"]
|
||||
|
|
@ -0,0 +1,10 @@
|
|||
set -e
|
||||
/etc/init.d/mongodb start
|
||||
cd /app
|
||||
export
|
||||
export PYTHONPATH=$PWD
|
||||
ls
|
||||
# python3 healthcareio/healthcare-io.py --signup $EMAIL --store mongo
|
||||
# python3 healthcareio/healthcare-io.py --analytics --port 80 --debug
|
||||
|
||||
bash
|
||||
Binary file not shown.
|
After Width: | Height: | Size: 81 KiB |
Binary file not shown.
|
After Width: | Height: | Size: 48 KiB |
|
|
@ -0,0 +1,314 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<XMI xmi.version="1.2" timestamp="2021-01-11T11:53:03" xmlns:UML="http://schema.omg.org/spec/UML/1.4" verified="false">
|
||||
<XMI.header>
|
||||
<XMI.documentation>
|
||||
<XMI.exporter>umbrello uml modeller http://umbrello.kde.org</XMI.exporter>
|
||||
<XMI.exporterVersion>1.6.17</XMI.exporterVersion>
|
||||
<XMI.exporterEncoding>UnicodeUTF8</XMI.exporterEncoding>
|
||||
</XMI.documentation>
|
||||
<XMI.metamodel xmi.version="1.4" xmi.name="UML" href="UML.xml"/>
|
||||
</XMI.header>
|
||||
<XMI.content>
|
||||
<UML:Model isAbstract="false" isRoot="false" name="UML Model" isLeaf="false" isSpecification="false" xmi.id="m1">
|
||||
<UML:Namespace.ownedElement>
|
||||
<UML:Stereotype isAbstract="false" isRoot="false" name="folder" isLeaf="false" visibility="public" isSpecification="false" xmi.id="folder" namespace="m1"/>
|
||||
<UML:Model isAbstract="false" isRoot="false" name="Logical View" isLeaf="false" visibility="public" isSpecification="false" xmi.id="Logical_View" namespace="m1">
|
||||
<UML:Namespace.ownedElement>
|
||||
<UML:Package isAbstract="false" isRoot="false" name="Datatypes" isLeaf="false" visibility="public" stereotype="folder" isSpecification="false" xmi.id="Datatypes" namespace="Logical_View">
|
||||
<UML:Namespace.ownedElement>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="char" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uabvhj07enGME" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="int" isLeaf="false" visibility="public" isSpecification="false" xmi.id="u4OxDbpjlH3pe" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="float" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uDJRPxwaZX3V7" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="double" isLeaf="false" visibility="public" isSpecification="false" xmi.id="usBQivEzmQ1BW" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="bool" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uwRCbX5F7jgLF" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="string" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uzDhYR9iUxXR6" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="unsigned char" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uFh4LzRYE3f5n" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="signed char" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uWGlDG1tsuigz" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="unsigned int" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uCRFY3OMvmsTh" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="signed int" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uzkXa9SjrJK3C" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="short int" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uHr88gSJngOwQ" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="unsigned short int" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uMFI3J7IsMqdx" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="signed short int" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uHnTLssRNvwe9" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="long int" isLeaf="false" visibility="public" isSpecification="false" xmi.id="udr0tadLTTAWz" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="signed long int" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uGiRQT4nooVd3" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="unsigned long int" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uXN2ZkDRs26FV" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="long double" isLeaf="false" visibility="public" isSpecification="false" xmi.id="ueN3MSvcxioDm" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="wchar_t" isLeaf="false" visibility="public" isSpecification="false" xmi.id="u3oTW1v02tom1" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="bigint" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uhsHrB8csHO10" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="bigserial" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uivybGgIE3bD0" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="bit" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uWWi8ci3eh65i" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="bit varying" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uqpjG9tkWEa7X" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="boolean" isLeaf="false" visibility="public" isSpecification="false" xmi.id="u5TSvGJ0WXtUp" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="box" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uGDbLeVMULJkk" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="bytea" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uLGmbFVmIZR5K" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="character varying" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uSnvPt02S7tvb" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="character" isLeaf="false" visibility="public" isSpecification="false" xmi.id="ukmjXUC40LtU7" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="cidr" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uz3Al8mzoS0I3" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="circle" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uyHfbIHPXILpB" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="date" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uL5DOPBGjUyyC" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="decimal" isLeaf="false" visibility="public" isSpecification="false" xmi.id="u6MI7pVV7hXsf" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="double precision" isLeaf="false" visibility="public" isSpecification="false" xmi.id="ujgGh0hthNOjx" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="inet" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uKX78NObRE1fe" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="integer" isLeaf="false" visibility="public" isSpecification="false" xmi.id="ulzNk0Rb91myv" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="interval" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uI220TA6Z0j6n" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="line" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uDrG5vcusdKBM" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="lseg" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uCgYfO6iac2jN" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="macaddr" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uxSn0sOl0rdv1" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="money" isLeaf="false" visibility="public" isSpecification="false" xmi.id="unOpNjlDqyBUV" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="numeric" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uOGQO1PzHG9jT" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="path" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uIYX1EziKvxte" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="point" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uB5Z9Av67TQfu" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="polygon" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uclB4l6uHrYXp" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="real" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uvDJ2b98uJr2k" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="serial" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uoRs9Jh7Jejo2" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="smallint" isLeaf="false" visibility="public" isSpecification="false" xmi.id="u0Uu6RLk1nAgq" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="time without time zone" isLeaf="false" visibility="public" isSpecification="false" xmi.id="u85nOph4JKwlg" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="time with time zone" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uL9aNTx5gdrZz" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="timestamp without time zone" isLeaf="false" visibility="public" isSpecification="false" xmi.id="u4qKd0QA9rWNf" namespace="Datatypes"/>
|
||||
<UML:DataType isAbstract="false" isRoot="false" name="timestamp with time zone" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uOTQbnbs1N3TF" namespace="Datatypes"/>
|
||||
</UML:Namespace.ownedElement>
|
||||
</UML:Package>
|
||||
</UML:Namespace.ownedElement>
|
||||
<XMI.extension xmi.extender="umbrello">
|
||||
<diagrams resolution="96">
|
||||
<diagram xmi.id="u8KOkLitCdEg4" showattsig="1" localid="-1" snapcsgrid="0" documentation="" name="class diagram" snapgrid="0" showattribassocs="1" isopen="1" linecolor="#ff0000" linewidth="0" showopsig="1" snapy="25" usefillcolor="1" type="1" canvasheight="0" showatts="1" griddotcolor="#d3d3d3" snapx="25" zoom="100" fillcolor="#ffff00" showstereotype="1" font="Sans Serif,9,-1,5,50,0,0,0,0,0" textcolor="#000000" showops="1" showpubliconly="0" showscope="1" canvaswidth="0" backgroundcolor="#ffffff" showpackage="1" showgrid="0">
|
||||
<widgets/>
|
||||
<messages/>
|
||||
<associations/>
|
||||
</diagram>
|
||||
</diagrams>
|
||||
</XMI.extension>
|
||||
</UML:Model>
|
||||
<UML:Model isAbstract="false" isRoot="false" name="Use Case View" isLeaf="false" visibility="public" isSpecification="false" xmi.id="Use_Case_View" namespace="m1">
|
||||
<UML:Namespace.ownedElement/>
|
||||
</UML:Model>
|
||||
<UML:Model isAbstract="false" isRoot="false" name="Component View" isLeaf="false" visibility="public" isSpecification="false" xmi.id="Component_View" namespace="m1">
|
||||
<UML:Namespace.ownedElement/>
|
||||
</UML:Model>
|
||||
<UML:Model isAbstract="false" isRoot="false" name="Deployment View" isLeaf="false" visibility="public" isSpecification="false" xmi.id="Deployment_View" namespace="m1">
|
||||
<UML:Namespace.ownedElement/>
|
||||
</UML:Model>
|
||||
<UML:Model isAbstract="false" isRoot="false" name="Entity Relationship Model" isLeaf="false" visibility="public" isSpecification="false" xmi.id="Entity_Relationship_Model" namespace="m1">
|
||||
<UML:Namespace.ownedElement>
|
||||
<UML:Entity isAbstract="false" isRoot="false" name="adjustments" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uIt8r5rl1o40g" namespace="Entity_Relationship_Model">
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="claim_id" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uSYVzSUI013SA" namespace="uIt8r5rl1o40g" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="amount" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uTpfrtFZpRhat" namespace="uIt8r5rl1o40g" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="reason" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="ukqfwxa6LykJ0" namespace="uIt8r5rl1o40g" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="quantity" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="u588PxOwyWVln" namespace="uIt8r5rl1o40g" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="_index" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uFD7jRw8vwz8o" namespace="uIt8r5rl1o40g" type="uSnvPt02S7tvb"/>
|
||||
</UML:Entity>
|
||||
<UML:Entity isAbstract="false" isRoot="false" name="claims" isLeaf="false" visibility="public" isSpecification="false" xmi.id="u0o6nLeO0fEm7" namespace="Entity_Relationship_Model">
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="claim_id" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uYDfK8VkY0Uex" namespace="u0o6nLeO0fEm7" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="claim_amount" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="un3xoNxajJ2xm" namespace="u0o6nLeO0fEm7" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="place_of_service" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uwUPYbIyt5p6d" namespace="u0o6nLeO0fEm7" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="is_delayed" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="u74xYiT4G5wyL" namespace="u0o6nLeO0fEm7" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="patient_dob" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="ulgSeuvbWb2IS" namespace="u0o6nLeO0fEm7" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="patient_gender" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="ue7HQl68mupvi" namespace="u0o6nLeO0fEm7" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="provider_code" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="u7ACwVQiy9E9Z" namespace="u0o6nLeO0fEm7" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="provider_ref_id_code" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uiZCcx2if32Rz" namespace="u0o6nLeO0fEm7" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="provider_ref_id" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="u6YddgnfmpAlc" namespace="u0o6nLeO0fEm7" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="receiver_id" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uogvUuoceENSP" namespace="u0o6nLeO0fEm7" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="claim_type" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="udh4izR25tLXk" namespace="u0o6nLeO0fEm7" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="submitted_date" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uNawwAMUkVRCI" namespace="u0o6nLeO0fEm7" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="submitted_time" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uRjR66XIKc4Cj" namespace="u0o6nLeO0fEm7" type="uSnvPt02S7tvb"/>
|
||||
</UML:Entity>
|
||||
<UML:Entity isAbstract="false" isRoot="false" name="dates" isLeaf="false" visibility="public" isSpecification="false" xmi.id="u9jx6NrYMk8ba" namespace="Entity_Relationship_Model">
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="claim_id" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uOFiCH5hs2CqD" namespace="u9jx6NrYMk8ba" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="date_value" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uWlHRTJczp2hP" namespace="u9jx6NrYMk8ba" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="date_type" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uJ3UETdwbO2Ig" namespace="u9jx6NrYMk8ba" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="_index" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uDgHTOeq61MN6" namespace="u9jx6NrYMk8ba" type="uSnvPt02S7tvb"/>
|
||||
</UML:Entity>
|
||||
<UML:Entity isAbstract="false" isRoot="false" name="diagnosis" isLeaf="false" visibility="public" isSpecification="false" xmi.id="u8PmJ0kOURyJH" namespace="Entity_Relationship_Model">
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="claim_id" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uO3lWqTMmrG6a" namespace="u8PmJ0kOURyJH" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="code" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uFe9gE8wNmF3K" namespace="u8PmJ0kOURyJH" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="type" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uyHg48x5zNXfx" namespace="u8PmJ0kOURyJH" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="_index" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uxk7Kdk2zHUiA" namespace="u8PmJ0kOURyJH" type="uSnvPt02S7tvb"/>
|
||||
</UML:Entity>
|
||||
<UML:Entity isAbstract="false" isRoot="false" name="insurance" isLeaf="false" visibility="public" isSpecification="false" xmi.id="uryWFOwX9Hwnx" namespace="Entity_Relationship_Model">
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="claim_id" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="uRBVaj3Qzg9x6" namespace="uryWFOwX9Hwnx" type="uSnvPt02S7tvb"/>
|
||||
<UML:EntityAttribute isAbstract="false" dbindex_type="1100" isRoot="false" auto_increment="0" name="vendor" isLeaf="false" values="125" attributes="" visibility="public" initialValue="" isSpecification="false" allow_null="1" xmi.id="ud6f1Wq2fcILc" namespace="uryWFOwX9Hwnx" type="uSnvPt02S7tvb"/>
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||||
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</listitem>
|
||||
<listitem id="Use_Case_View" open="1" type="802"/>
|
||||
</listitem>
|
||||
</listview>
|
||||
<codegeneration>
|
||||
<codegenerator language="PostgreSQL"/>
|
||||
</codegeneration>
|
||||
</XMI.extensions>
|
||||
</XMI>
|
||||
|
|
@ -0,0 +1,331 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<XMI verified="false" timestamp="2021-01-11T15:50:46" xmlns:UML="http://schema.omg.org/spec/UML/1.4" xmi.version="1.2">
|
||||
<XMI.header>
|
||||
<XMI.documentation>
|
||||
<XMI.exporter>umbrello uml modeller http://umbrello.kde.org</XMI.exporter>
|
||||
<XMI.exporterVersion>1.6.17</XMI.exporterVersion>
|
||||
<XMI.exporterEncoding>UnicodeUTF8</XMI.exporterEncoding>
|
||||
</XMI.documentation>
|
||||
<XMI.metamodel xmi.name="UML" xmi.version="1.4" href="UML.xml"/>
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
<UML:DataType xmi.id="uJPiqYCPjwNHv" isLeaf="false" isAbstract="false" visibility="public" name="year" isSpecification="false" namespace="Datatypes" isRoot="false"/>
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||||
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|
||||
</UML:Namespace.ownedElement>
|
||||
</UML:Package>
|
||||
</UML:Namespace.ownedElement>
|
||||
<XMI.extension xmi.extender="umbrello">
|
||||
<diagrams resolution="96">
|
||||
<diagram documentation="" showstereotype="1" textcolor="#000000" showattribassocs="1" name="class diagram" snapy="25" zoom="100" showops="1" showopsig="1" fillcolor="#ffff00" showpackage="1" canvaswidth="0" isopen="1" backgroundcolor="#ffffff" showpubliconly="0" snapgrid="0" snapx="25" xmi.id="ucgtgQRSMYlOp" showatts="1" type="1" griddotcolor="#d3d3d3" showattsig="1" font="Sans Serif,9,-1,5,50,0,0,0,0,0" showgrid="0" showscope="1" linecolor="#ff0000" snapcsgrid="0" linewidth="0" usefillcolor="1" localid="-1" canvasheight="0">
|
||||
<widgets/>
|
||||
<messages/>
|
||||
<associations/>
|
||||
</diagram>
|
||||
</diagrams>
|
||||
</XMI.extension>
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
<UML:Namespace.ownedElement>
|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
<UML:EntityAttribute xmi.id="u1rGJT5BzOnTc" allow_null="1" dbindex_type="1100" isLeaf="false" isAbstract="false" visibility="public" initialValue="" attributes="" type="uy27kWMqeaG0m" auto_increment="0" name="date" isSpecification="false" namespace="uYFy5I3jZovwB" values="125" isRoot="false"/>
|
||||
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|
||||
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|
||||
</UML:Entity>
|
||||
<UML:Entity xmi.id="uQLb3AjtJtg1u" isLeaf="false" isAbstract="false" visibility="public" name="procedures" isSpecification="false" namespace="Entity_Relationship_Model" isRoot="false">
|
||||
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|
||||
<UML:EntityAttribute xmi.id="uvwYZ2ZXVtktZ" allow_null="1" dbindex_type="1100" isLeaf="false" isAbstract="false" visibility="public" initialValue="" attributes="" type="uy27kWMqeaG0m" auto_increment="0" name="code" isSpecification="false" namespace="uQLb3AjtJtg1u" values="125" isRoot="false"/>
|
||||
<UML:EntityAttribute xmi.id="uK1hOh0gYH7UR" allow_null="1" dbindex_type="1100" isLeaf="false" isAbstract="false" visibility="public" initialValue="" attributes="" type="uy27kWMqeaG0m" auto_increment="0" name="amount" isSpecification="false" namespace="uQLb3AjtJtg1u" values="125" isRoot="false"/>
|
||||
<UML:EntityAttribute xmi.id="uzXoWRaQEBR4N" allow_null="1" dbindex_type="1100" isLeaf="false" isAbstract="false" visibility="public" initialValue="" attributes="" type="uy27kWMqeaG0m" auto_increment="0" name="line_charge_amount" isSpecification="false" namespace="uQLb3AjtJtg1u" values="125" isRoot="false"/>
|
||||
<UML:EntityAttribute xmi.id="uTu2N31LFQjZs" allow_null="1" dbindex_type="1100" isLeaf="false" isAbstract="false" visibility="public" initialValue="" attributes="" type="uy27kWMqeaG0m" auto_increment="0" name="submitted_units_of_service" isSpecification="false" namespace="uQLb3AjtJtg1u" values="125" isRoot="false"/>
|
||||
<UML:EntityAttribute xmi.id="uX3uZJhBt3XbF" allow_null="1" dbindex_type="1100" isLeaf="false" isAbstract="false" visibility="public" initialValue="" attributes="" type="uy27kWMqeaG0m" auto_increment="0" name="revenue_code" isSpecification="false" namespace="uQLb3AjtJtg1u" values="125" isRoot="false"/>
|
||||
<UML:EntityAttribute xmi.id="u1iY5DjVfwxct" allow_null="1" dbindex_type="1100" isLeaf="false" isAbstract="false" visibility="public" initialValue="" attributes="" type="uy27kWMqeaG0m" auto_increment="0" name="paid_units_of_service" isSpecification="false" namespace="uQLb3AjtJtg1u" values="125" isRoot="false"/>
|
||||
<UML:EntityAttribute xmi.id="udHyId5EQgnxd" allow_null="1" dbindex_type="1100" isLeaf="false" isAbstract="false" visibility="public" initialValue="" attributes="" type="uy27kWMqeaG0m" auto_increment="0" name="line_paid_amount" isSpecification="false" namespace="uQLb3AjtJtg1u" values="125" isRoot="false"/>
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||||
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||||
<listitem type="833" id="uM8YUylmQOOZz" open="0"/>
|
||||
<listitem type="833" id="uIOoyY9AcSXqj" open="0"/>
|
||||
<listitem type="833" id="umBq8tNVoHLwQ" open="0"/>
|
||||
<listitem type="833" id="ussv42OpwEC3o" open="0"/>
|
||||
<listitem type="833" id="uaPrhdtHj174f" open="0"/>
|
||||
<listitem type="833" id="uMxluIdcl530X" open="0"/>
|
||||
<listitem type="833" id="uRKSgcFBa5IZo" open="0"/>
|
||||
<listitem type="833" id="uTmKxBb1U6HHd" open="0"/>
|
||||
<listitem type="833" id="uO0RFshYIUxyV" open="0"/>
|
||||
<listitem type="833" id="uYOWi0TRwwQ9C" open="0"/>
|
||||
<listitem type="833" id="u26a7mGlibP31" open="0"/>
|
||||
<listitem type="833" id="u2TjnY4FpRX7E" open="0"/>
|
||||
<listitem type="833" id="uVwZLtkVRxhLS" open="0"/>
|
||||
<listitem type="833" id="uqT7KYiudzE2a" open="0"/>
|
||||
<listitem type="833" id="u4760sev0qJdC" open="0"/>
|
||||
<listitem type="833" id="utDLqzoqgcm98" open="0"/>
|
||||
<listitem type="833" id="uGKSxco6bkhJK" open="0"/>
|
||||
<listitem type="833" id="uFR0HPZWCHTOd" open="0"/>
|
||||
<listitem type="833" id="u35C8cp4M74EZ" open="0"/>
|
||||
<listitem type="833" id="u8b87l43udLdm" open="0"/>
|
||||
<listitem type="833" id="uutC8Ww5MIEDw" open="0"/>
|
||||
</listitem>
|
||||
<listitem label="remits" type="834" id="uKioLvROZP9sj" open="0"/>
|
||||
<listitem type="832" id="uDyfldNoIv0VN" open="0">
|
||||
<listitem type="833" id="uiSnbXbl5xZgj" open="0"/>
|
||||
<listitem type="833" id="uHlzHdGAzTLje" open="0"/>
|
||||
<listitem type="833" id="uXzmRTjxt5urK" open="0"/>
|
||||
<listitem type="833" id="uZaNNwlpF8G8D" open="0"/>
|
||||
<listitem type="833" id="uTVrpMWQGZv9k" open="0"/>
|
||||
<listitem type="833" id="uDVH1N8QTr4Hh" open="0"/>
|
||||
<listitem type="833" id="uTdAUNse734xO" open="0"/>
|
||||
<listitem type="833" id="usy1XBeLxeUGA" open="0"/>
|
||||
</listitem>
|
||||
</listitem>
|
||||
<listitem type="801" id="Logical_View" open="1">
|
||||
<listitem label="class diagram" type="807" id="ucgtgQRSMYlOp" open="0"/>
|
||||
<listitem type="830" id="Datatypes" open="0">
|
||||
<listitem type="829" id="udJEUGSmFsMc7" open="1"/>
|
||||
<listitem type="829" id="uKoxqBVMuFAFv" open="1"/>
|
||||
<listitem type="829" id="usYHH6veFLtOr" open="0"/>
|
||||
<listitem type="829" id="u4xIFQFMKzJrw" open="0"/>
|
||||
<listitem type="829" id="uy27kWMqeaG0m" open="0"/>
|
||||
<listitem type="829" id="u0C5GYVgNAN71" open="1"/>
|
||||
<listitem type="829" id="u9FKE3RWhiqcG" open="1"/>
|
||||
<listitem type="829" id="uhDxBNpwOBqQw" open="1"/>
|
||||
<listitem type="829" id="u2wysBNkFNdqp" open="0"/>
|
||||
<listitem type="829" id="uHqbfHWPho1Ur" open="1"/>
|
||||
<listitem type="829" id="u2CL1gZXtSnOS" open="0"/>
|
||||
<listitem type="829" id="uUrqcj6xGhwaC" open="0"/>
|
||||
<listitem type="829" id="uuismMojqbmsx" open="0"/>
|
||||
<listitem type="829" id="uO1NrEETU4UC8" open="0"/>
|
||||
<listitem type="829" id="uya6iY5Q7DGeZ" open="1"/>
|
||||
<listitem type="829" id="uaeIOuN6e4FU1" open="1"/>
|
||||
<listitem type="829" id="u8zuwCW44JB95" open="1"/>
|
||||
<listitem type="829" id="uGdQJaRR6gTOr" open="1"/>
|
||||
<listitem type="829" id="uYevwcNN1qRSX" open="1"/>
|
||||
<listitem type="829" id="uApLJztW3N1vU" open="1"/>
|
||||
<listitem type="829" id="uHcFFwtOW2QoG" open="0"/>
|
||||
<listitem type="829" id="unwvIxd81D8F6" open="0"/>
|
||||
<listitem type="829" id="u8U3EclXHUBqf" open="0"/>
|
||||
<listitem type="829" id="umes0MFf2bAXI" open="0"/>
|
||||
<listitem type="829" id="uc2wrhdQQFdKR" open="0"/>
|
||||
<listitem type="829" id="uCMJShOyEcx65" open="1"/>
|
||||
<listitem type="829" id="uN90WSzxg70L5" open="0"/>
|
||||
<listitem type="829" id="uMXT4n4yeeGxP" open="1"/>
|
||||
<listitem type="829" id="uZPyITrjct7nt" open="1"/>
|
||||
<listitem type="829" id="uJlnCmWCjiZyb" open="1"/>
|
||||
<listitem type="829" id="uJ6eIdSRnQ1mC" open="1"/>
|
||||
<listitem type="829" id="uFa0n9CbZAGQz" open="1"/>
|
||||
<listitem type="829" id="uUmpoisGYNixK" open="1"/>
|
||||
<listitem type="829" id="uks0OAl3npzAp" open="0"/>
|
||||
<listitem type="829" id="uegsqNCOwThlg" open="0"/>
|
||||
<listitem type="829" id="uIzLslKdzkNSu" open="0"/>
|
||||
<listitem type="829" id="u3gksr7QwMjSv" open="0"/>
|
||||
<listitem type="829" id="uCYvllFCLICqv" open="1"/>
|
||||
<listitem type="829" id="uaxm6xi0OF7H9" open="0"/>
|
||||
<listitem type="829" id="uJPiqYCPjwNHv" open="1"/>
|
||||
</listitem>
|
||||
</listitem>
|
||||
<listitem type="802" id="Use_Case_View" open="1"/>
|
||||
</listitem>
|
||||
</listview>
|
||||
<codegeneration>
|
||||
<codegenerator language="SQL"/>
|
||||
</codegeneration>
|
||||
</XMI.extensions>
|
||||
</XMI>
|
||||
|
|
@ -32,9 +32,10 @@ Usage :
|
|||
from healthcareio.params import SYS_ARGS
|
||||
from transport import factory
|
||||
import requests
|
||||
|
||||
from healthcareio import analytics
|
||||
from healthcareio import server
|
||||
|
||||
|
||||
from healthcareio.parser import get_content
|
||||
import os
|
||||
import json
|
||||
|
|
@ -43,6 +44,10 @@ import numpy as np
|
|||
from multiprocessing import Process
|
||||
import time
|
||||
from healthcareio import x12
|
||||
from healthcareio.export import export
|
||||
import smart
|
||||
from healthcareio.server import proxy
|
||||
import pandas as pd
|
||||
|
||||
PATH = os.sep.join([os.environ['HOME'],'.healthcareio'])
|
||||
OUTPUT_FOLDER = os.sep.join([os.environ['HOME'],'healthcare-io'])
|
||||
|
|
@ -53,10 +58,28 @@ if not os.path.exists(PATH) :
|
|||
import platform
|
||||
import sqlite3 as lite
|
||||
# PATH = os.sep.join([os.environ['HOME'],'.edi-parser'])
|
||||
def register (**args) :
|
||||
HELP_MESSAGE = """
|
||||
cli:
|
||||
|
||||
healthcare-io.py --<[signup|init]> <email> --store <sqlite|mongo> [--batch <value>]
|
||||
healthcare-io.py --parse --folder <path> [--batch <value>] [--resume]
|
||||
healthcare-io.py --check-update
|
||||
healthcare-io.py --export <835|837> --config <config-path>
|
||||
action :
|
||||
--signup|init signup user and get configuration file
|
||||
--parse starts parsing
|
||||
--check checks for updates
|
||||
--export export data of a 835 or 837 into another database
|
||||
parameters :
|
||||
--<[signup|init]> signup or get a configuration file from a parsing server
|
||||
--folder location of the files (the program will recursively traverse it)
|
||||
--store data store mongo or sqlite or mongodb
|
||||
--resume will attempt to resume if there was an interruption
|
||||
"""
|
||||
def signup (**args) :
|
||||
"""
|
||||
:email user's email address
|
||||
:url url of the provider to register
|
||||
:url url of the provider to signup
|
||||
"""
|
||||
|
||||
email = args['email']
|
||||
|
|
@ -121,77 +144,77 @@ def init():
|
|||
#
|
||||
# Global variables that load the configuration files
|
||||
|
||||
def parse(**args):
|
||||
"""
|
||||
This function will parse the content of a claim or remittance (x12 format) give the following parameters
|
||||
:filename absolute path of the file to be parsed
|
||||
:type claims|remits in x12 format
|
||||
"""
|
||||
global INFO
|
||||
if not INFO :
|
||||
INFO = init()
|
||||
if args['type'] == 'claims' :
|
||||
CONFIG = INFO['parser']['837']
|
||||
elif args['type'] == 'remits' :
|
||||
CONFIG = INFO['parser']['835']
|
||||
else:
|
||||
CONFIG = None
|
||||
if CONFIG :
|
||||
# CONFIG = CONFIG[-1] if 'version' not in args and (args['version'] < len(CONFIG)) else CONFIG[0]
|
||||
CONFIG = CONFIG[int(args['version'])-1] if 'version' in SYS_ARGS and int(SYS_ARGS['version']) < len(CONFIG) else CONFIG[-1]
|
||||
SECTION = CONFIG['SECTION']
|
||||
os.environ['HEALTHCAREIO_SALT'] = INFO['owner']
|
||||
# def parse(**args):
|
||||
# """
|
||||
# This function will parse the content of a claim or remittance (x12 format) give the following parameters
|
||||
# :filename absolute path of the file to be parsed
|
||||
# :type claims|remits in x12 format
|
||||
# """
|
||||
# global INFO
|
||||
# if not INFO :
|
||||
# INFO = init()
|
||||
# if args['type'] == 'claims' :
|
||||
# CONFIG = INFO['parser']['837']
|
||||
# elif args['type'] == 'remits' :
|
||||
# CONFIG = INFO['parser']['835']
|
||||
# else:
|
||||
# CONFIG = None
|
||||
# if CONFIG :
|
||||
# # CONFIG = CONFIG[-1] if 'version' not in args and (args['version'] < len(CONFIG)) else CONFIG[0]
|
||||
# CONFIG = CONFIG[int(args['version'])-1] if 'version' in SYS_ARGS and int(SYS_ARGS['version']) < len(CONFIG) else CONFIG[-1]
|
||||
# SECTION = CONFIG['SECTION']
|
||||
# os.environ['HEALTHCAREIO_SALT'] = INFO['owner']
|
||||
|
||||
|
||||
return get_content(args['filename'],CONFIG,SECTION)
|
||||
def resume (files,id,config):
|
||||
_args = config['store'].copy()
|
||||
if 'mongo' in config['store']['type'] :
|
||||
_args['type'] = 'mongo.MongoReader'
|
||||
reader = factory.instance(**_args)
|
||||
_files = []
|
||||
if 'resume' in config['analytics'] :
|
||||
_args = config['analytics']['resume'][id]
|
||||
_files = reader.read(**_args)
|
||||
_files = [item['name'] for item in _files if item['name'] != None]
|
||||
return list(set(files) - set(_files))
|
||||
# return get_content(args['filename'],CONFIG,SECTION)
|
||||
# def resume (files,id,config):
|
||||
# _args = config['store'].copy()
|
||||
# if 'mongo' in config['store']['type'] :
|
||||
# _args['type'] = 'mongo.MongoReader'
|
||||
# reader = factory.instance(**_args)
|
||||
# _files = []
|
||||
# if 'resume' in config['analytics'] :
|
||||
# _args = config['analytics']['resume'][id]
|
||||
# _files = reader.read(**_args)
|
||||
# _files = [item['name'] for item in _files if item['name'] != None]
|
||||
# return list(set(files) - set(_files))
|
||||
|
||||
return files
|
||||
pass
|
||||
def apply(files,store_info,logger_info=None):
|
||||
"""
|
||||
:files list of files to be processed in this given thread/process
|
||||
:store_info information about data-store, for now disk isn't thread safe
|
||||
:logger_info information about where to store the logs
|
||||
"""
|
||||
# return files
|
||||
# pass
|
||||
# def apply(files,store_info,logger_info=None):
|
||||
# """
|
||||
# :files list of files to be processed in this given thread/process
|
||||
# :store_info information about data-store, for now disk isn't thread safe
|
||||
# :logger_info information about where to store the logs
|
||||
# """
|
||||
|
||||
if not logger_info :
|
||||
logger = factory.instance(type='disk.DiskWriter',args={'path':os.sep.join([info['out-folder'],SYS_ARGS['parse']+'.log'])})
|
||||
else:
|
||||
logger = factory.instance(**logger_info)
|
||||
# if not logger_info :
|
||||
# logger = factory.instance(type='disk.DiskWriter',args={'path':os.sep.join([info['out-folder'],SYS_ARGS['parse']+'.log'])})
|
||||
# else:
|
||||
# logger = factory.instance(**logger_info)
|
||||
|
||||
writer = factory.instance(**store_info)
|
||||
for filename in files :
|
||||
# writer = factory.instance(**store_info)
|
||||
# for filename in files :
|
||||
|
||||
if filename.strip() == '':
|
||||
continue
|
||||
# content,logs = get_content(filename,CONFIG,CONFIG['SECTION'])
|
||||
#
|
||||
try:
|
||||
content,logs = parse(filename = filename,type=SYS_ARGS['parse'])
|
||||
# if filename.strip() == '':
|
||||
# continue
|
||||
# # content,logs = get_content(filename,CONFIG,CONFIG['SECTION'])
|
||||
# #
|
||||
# try:
|
||||
# content,logs = parse(filename = filename,type=SYS_ARGS['parse'])
|
||||
|
||||
if content :
|
||||
writer.write(content)
|
||||
if logs :
|
||||
[logger.write(dict(_row,**{"parse":SYS_ARGS['parse']})) for _row in logs]
|
||||
else:
|
||||
logger.write({"parse":SYS_ARGS['parse'],"name":filename,"completed":True,"rows":len(content)})
|
||||
except Exception as e:
|
||||
# if content :
|
||||
# writer.write(content)
|
||||
# if logs :
|
||||
# [logger.write(dict(_row,**{"parse":SYS_ARGS['parse']})) for _row in logs]
|
||||
# else:
|
||||
# logger.write({"parse":SYS_ARGS['parse'],"name":filename,"completed":True,"rows":len(content)})
|
||||
# except Exception as e:
|
||||
|
||||
logger.write({"parse":SYS_ARGS['parse'],"filename":filename,"completed":False,"rows":-1,"msg":e.args[0]})
|
||||
# print ([filename,len(content)])
|
||||
#
|
||||
# @TODO: forward this data to the writer and log engine
|
||||
# logger.write({"parse":SYS_ARGS['parse'],"filename":filename,"completed":False,"rows":-1,"msg":e.args[0]})
|
||||
# # print ([filename,len(content)])
|
||||
# #
|
||||
# # @TODO: forward this data to the writer and log engine
|
||||
#
|
||||
def upgrade(**args):
|
||||
"""
|
||||
|
|
@ -200,13 +223,28 @@ def upgrade(**args):
|
|||
"""
|
||||
url = args['url'] if 'url' in args else URL+"/upgrade"
|
||||
headers = {"key":args['key'],"email":args["email"],"url":url}
|
||||
def check(**_args):
|
||||
"""
|
||||
This function will check if there is an update available (versions are in the configuration file)
|
||||
:param url
|
||||
"""
|
||||
url = _args['url'][:-1] if _args['url'].endswith('/') else _args['url']
|
||||
url = url + "/version"
|
||||
if 'version' not in _args :
|
||||
version = {"_id":"version","current":0.0}
|
||||
else:
|
||||
version = _args['version']
|
||||
http = requests.session()
|
||||
r = http.get(url)
|
||||
return r.json()
|
||||
|
||||
if __name__ == '__main__' :
|
||||
info = init()
|
||||
|
||||
if 'out-folder' in SYS_ARGS :
|
||||
OUTPUT_FOLDER = SYS_ARGS['out-folder']
|
||||
|
||||
SYS_ARGS['url'] = SYS_ARGS['url'] if 'url' in SYS_ARGS else URL
|
||||
|
||||
if set(list(SYS_ARGS.keys())) & set(['signup','init']):
|
||||
#
|
||||
# This command will essentially get a new copy of the configurations
|
||||
|
|
@ -214,10 +252,10 @@ if __name__ == '__main__' :
|
|||
#
|
||||
|
||||
email = SYS_ARGS['signup'].strip() if 'signup' in SYS_ARGS else SYS_ARGS['init']
|
||||
url = SYS_ARGS['url'] if 'url' in SYS_ARGS else 'https://healthcareio.the-phi.com'
|
||||
url = SYS_ARGS['url'] if 'url' in SYS_ARGS else URL
|
||||
store = SYS_ARGS['store'] if 'store' in SYS_ARGS else 'sqlite'
|
||||
db='healthcareio' if 'db' not in SYS_ARGS else SYS_ARGS['db']
|
||||
register(email=email,url=url,store=store,db=db)
|
||||
signup(email=email,url=url,store=store,db=db)
|
||||
# else:
|
||||
# m = """
|
||||
# usage:
|
||||
|
|
@ -241,51 +279,31 @@ if __name__ == '__main__' :
|
|||
if 'file' in SYS_ARGS :
|
||||
files = [SYS_ARGS['file']] if not os.path.isdir(SYS_ARGS['file']) else []
|
||||
if 'folder' in SYS_ARGS and os.path.exists(SYS_ARGS['folder']):
|
||||
names = os.listdir(SYS_ARGS['folder'])
|
||||
files += [os.sep.join([SYS_ARGS['folder'],name]) for name in names if not os.path.isdir(os.sep.join([SYS_ARGS['folder'],name]))]
|
||||
for root,_dir,f in os.walk(SYS_ARGS['folder']) :
|
||||
|
||||
if f :
|
||||
files += [os.sep.join([root,name]) for name in f]
|
||||
|
||||
# names = os.listdir(SYS_ARGS['folder'])
|
||||
# files += [os.sep.join([SYS_ARGS['folder'],name]) for name in names if not os.path.isdir(os.sep.join([SYS_ARGS['folder'],name]))]
|
||||
else:
|
||||
#
|
||||
# raise an erro
|
||||
# raise an error
|
||||
|
||||
pass
|
||||
#
|
||||
# if the user has specified to resume, we should look into the logs and pull the files processed and those that haven't
|
||||
#
|
||||
if 'resume' in SYS_ARGS :
|
||||
files = resume(files,SYS_ARGS['parse'],info)
|
||||
print (["Found ",len(files)," files unprocessed"])
|
||||
store_config = json.loads( (open(os.sep.join([PATH,'config.json']))).read() )
|
||||
files = proxy.get.resume(files,store_config )
|
||||
# print (["Found ",len(files)," files unprocessed"])
|
||||
#
|
||||
# @TODO: Log this here so we know what is being processed or not
|
||||
SCOPE = None
|
||||
|
||||
if files : #and ('claims' in SYS_ARGS['parse'] or 'remits' in SYS_ARGS['parse']):
|
||||
# logger = factory.instance(type='disk.DiskWriter',args={'path':os.sep.join([info['out-folder'],SYS_ARGS['parse']+'.log'])})
|
||||
# if info['store']['type'] == 'disk.DiskWriter' :
|
||||
# info['store']['args']['path'] += (os.sep + 'healthcare-io.json')
|
||||
# elif info['store']['type'] == 'disk.SQLiteWriter' :
|
||||
# # info['store']['args']['path'] += (os.sep + 'healthcare-io.db3')
|
||||
# pass
|
||||
|
||||
|
||||
# if info['store']['type'] == 'disk.SQLiteWriter' :
|
||||
# info['store']['args']['table'] = SYS_ARGS['parse'].strip().lower()
|
||||
# _info = json.loads(json.dumps(info['store']))
|
||||
# _info['args']['table']='logs'
|
||||
# else:
|
||||
# #
|
||||
# # if we are working with no-sql we will put the logs in it (performance )?
|
||||
|
||||
# info['store']['args']['doc'] = SYS_ARGS['parse'].strip().lower()
|
||||
# _info = json.loads(json.dumps(info['store']))
|
||||
# _info['args']['doc'] = 'logs'
|
||||
# logger = factory.instance(**_info)
|
||||
|
||||
# writer = factory.instance(**info['store'])
|
||||
|
||||
#
|
||||
# we need to have batches ready for this in order to run some of these queries in parallel
|
||||
# @TODO: Make sure it is with a persistence storage (not disk .. not thread/process safe yet)
|
||||
# - Make sure we can leverage this on n-cores later on, for now the assumption is a single core
|
||||
#
|
||||
BATCH_COUNT = 1 if 'batch' not in SYS_ARGS else int (SYS_ARGS['batch'])
|
||||
|
||||
files = np.array_split(files,BATCH_COUNT)
|
||||
|
|
@ -304,27 +322,7 @@ if __name__ == '__main__' :
|
|||
while len(procs) > 0 :
|
||||
procs = [proc for proc in procs if proc.is_alive()]
|
||||
time.sleep(2)
|
||||
# for filename in files :
|
||||
|
||||
# if filename.strip() == '':
|
||||
# continue
|
||||
# # content,logs = get_content(filename,CONFIG,CONFIG['SECTION'])
|
||||
# #
|
||||
# try:
|
||||
# content,logs = parse(filename = filename,type=SYS_ARGS['parse'])
|
||||
# if content :
|
||||
# writer.write(content)
|
||||
# if logs :
|
||||
# [logger.write(dict(_row,**{"parse":SYS_ARGS['parse']})) for _row in logs]
|
||||
# else:
|
||||
# logger.write({"parse":SYS_ARGS['parse'],"name":filename,"completed":True,"rows":len(content)})
|
||||
# except Exception as e:
|
||||
# logger.write({"parse":SYS_ARGS['parse'],"filename":filename,"completed":False,"rows":-1,"msg":e.args[0]})
|
||||
# # print ([filename,len(content)])
|
||||
# #
|
||||
# # @TODO: forward this data to the writer and log engine
|
||||
# #
|
||||
|
||||
|
||||
|
||||
|
||||
pass
|
||||
|
|
@ -337,103 +335,71 @@ if __name__ == '__main__' :
|
|||
|
||||
# PATH= SYS_ARGS['config'] if 'config' in SYS_ARGS else os.sep.join([os.environ['HOME'],'.healthcareio','config.json'])
|
||||
|
||||
e = analytics.engine(os.sep.join([PATH,'config.json'])) #--@TODO: make the configuration file globally accessible
|
||||
e.apply(type='claims',serialize=True)
|
||||
SYS_ARGS['engine'] = e
|
||||
if os.path.exists(os.sep.join([PATH,'config.json'])) :
|
||||
e = analytics.engine(os.sep.join([PATH,'config.json'])) #--@TODO: make the configuration file globally accessible
|
||||
e.apply(type='claims',serialize=True)
|
||||
SYS_ARGS['engine'] = e
|
||||
SYS_ARGS['config'] = json.loads(open(os.sep.join([PATH,'config.json'])).read())
|
||||
else:
|
||||
SYS_ARGS['config'] = {"owner":None,"store":None}
|
||||
|
||||
if 'args' not in SYS_ARGS['config'] :
|
||||
SYS_ARGS['config']["args"] = {"batch":1,"resume":True,"folder":"/data"}
|
||||
|
||||
me = pd.DataFrame(smart.top.read(name='healthcare-io.py')).args.unique().tolist()
|
||||
SYS_ARGS['me'] = me[0] #-- This key will identify the current process
|
||||
|
||||
pointer = lambda : server.app.run(host='0.0.0.0',port=PORT,debug=DEBUG,threaded=False)
|
||||
pthread = Process(target=pointer,args=())
|
||||
pthread.start()
|
||||
elif 'check-update' in SYS_ARGS :
|
||||
_args = {"url":SYS_ARGS['url']}
|
||||
try:
|
||||
if os.path.exists(os.sep.join([PATH,'config.json'])) :
|
||||
SYS_ARGS['config'] = json.loads((open(os.sep.join([PATH,'config.json']))).read())
|
||||
else:
|
||||
SYS_ARGS['config'] = {}
|
||||
if 'version' in SYS_ARGS['config'] :
|
||||
_args['version'] = SYS_ARGS['config']['version']
|
||||
version = check(**_args)
|
||||
_version = {"current":0.0}if 'version' not in SYS_ARGS['config'] else SYS_ARGS['config']['version']
|
||||
if _version['current'] != version['current'] :
|
||||
print ()
|
||||
print ("You need to upgrade your system to version to ",version['current'])
|
||||
print ("\t- signup (for new configuration)")
|
||||
print ("\t- use pip to upgrade the codebase")
|
||||
else:
|
||||
print ()
|
||||
print ("You are running the current configuraiton version ",_version['current'])
|
||||
except Exception as e:
|
||||
print (e)
|
||||
pass
|
||||
|
||||
elif 'export' in SYS_ARGS:
|
||||
#
|
||||
# this function is designed to export the data to csv
|
||||
#
|
||||
format = SYS_ARGS['format'] if 'format' in SYS_ARGS else 'csv'
|
||||
format = format.lower()
|
||||
if set([format]) not in ['xls','csv'] :
|
||||
format = 'csv'
|
||||
path = SYS_ARGS['config']
|
||||
TYPE = SYS_ARGS['export'] if 'export' in SYS_ARGS else '835'
|
||||
if not os.path.exists(path) or TYPE not in ['835','837']:
|
||||
print (HELP_MESSAGE)
|
||||
else:
|
||||
#
|
||||
# Let's run the export function ..., This will push files into a data-store of choice Redshift, PostgreSQL, MySQL ...
|
||||
#
|
||||
_store = {"type":"sql.SQLWriter","args":json.loads( (open(path) ).read())}
|
||||
|
||||
pipes = export.Factory.instance(type=TYPE,write_store=_store) #"inspect":0,"cast":0}})
|
||||
# pipes[0].run()
|
||||
for thread in pipes:
|
||||
thread.start()
|
||||
time.sleep(1)
|
||||
while pipes :
|
||||
pipes = [thread for thread in pipes if thread.is_alive()]
|
||||
time.sleep(1)
|
||||
|
||||
|
||||
|
||||
else:
|
||||
msg = """
|
||||
cli:
|
||||
|
||||
healthcare-io.py --<[signup|init]> <email> --store <sqlite|mongo> [--batch <value>]
|
||||
healthcare-io.py --parse claims --folder <path> [--batch <value>]
|
||||
healthcare-io.py --parse remits --folder <path> [--batch <value>] [--resume]
|
||||
|
||||
parameters :
|
||||
--<[signup|init]> signup or get a configuration file from a parsing server
|
||||
--store data store mongo or sqlite or mongodb
|
||||
--resume will attempt to resume if there was an interruption
|
||||
"""
|
||||
print(msg)
|
||||
pass
|
||||
# """
|
||||
# The program was called from the command line thus we are expecting
|
||||
# parse in [claims,remits]
|
||||
# config os.sep.path.exists(path)
|
||||
# folder os.sep.path.exists(path)
|
||||
# store store ()
|
||||
# """
|
||||
# p = len( set(['store','config','folder']) & set(SYS_ARGS.keys())) == 3 and ('db' in SYS_ARGS or 'path' in SYS_ARGS)
|
||||
# TYPE = {
|
||||
# 'mongo':'mongo.MongoWriter',
|
||||
# 'couch':'couch.CouchWriter',
|
||||
# 'disk':'disk.DiskWriter'
|
||||
# }
|
||||
# INFO = {
|
||||
# '837':{'scope':'claims','section':'HL'},
|
||||
# '835':{'scope':'remits','section':'CLP'}
|
||||
# }
|
||||
# if p :
|
||||
# args = {}
|
||||
# scope = SYS_ARGS['config'][:-5].split(os.sep)[-1]
|
||||
# CONTEXT = INFO[scope]['scope']
|
||||
# #
|
||||
# # @NOTE:
|
||||
# # improve how database and data stores are handled.
|
||||
# if SYS_ARGS['store'] == 'couch' :
|
||||
# args = {'url': SYS_ARGS['url'] if 'url' in SYS_ARGS else 'http://localhost:5984'}
|
||||
# args['dbname'] = SYS_ARGS['db']
|
||||
|
||||
# elif SYS_ARGS ['store'] == 'mongo':
|
||||
# args = {'host':SYS_ARGS['host']if 'host' in SYS_ARGS else 'localhost:27017'}
|
||||
# if SYS_ARGS['store'] in ['mongo','couch']:
|
||||
# args['dbname'] = SYS_ARGS['db'] if 'db' in SYS_ARGS else 'claims_outcomes'
|
||||
# args['doc'] = CONTEXT
|
||||
|
||||
# TYPE = TYPE[SYS_ARGS['store']]
|
||||
# writer = factory.instance(type=TYPE,args=args)
|
||||
# if SYS_ARGS['store'] == 'disk':
|
||||
# writer.init(path = 'output-claims.json')
|
||||
# logger = factory.instance(type=TYPE,args= dict(args,**{"doc":"logs"}))
|
||||
# files = os.listdir(SYS_ARGS['folder'])
|
||||
# CONFIG = json.loads(open(SYS_ARGS['config']).read())
|
||||
# SECTION = INFO[scope]['section']
|
||||
|
||||
# for file in files :
|
||||
# if 'limit' in SYS_ARGS and files.index(file) == int(SYS_ARGS['limit']) :
|
||||
# break
|
||||
# else:
|
||||
# filename = os.sep.join([SYS_ARGS['folder'],file])
|
||||
|
||||
# try:
|
||||
# content,logs = get_content(filename,CONFIG,SECTION)
|
||||
# except Exception as e:
|
||||
# if sys.version_info[0] > 2 :
|
||||
# logs = [{"filename":filename,"msg":e.args[0]}]
|
||||
# else:
|
||||
# logs = [{"filename":filename,"msg":e.message}]
|
||||
# content = None
|
||||
# if content :
|
||||
|
||||
# writer.write(content)
|
||||
# if logs:
|
||||
|
||||
# logger.write(logs)
|
||||
|
||||
|
||||
# pass
|
||||
# else:
|
||||
# print (__doc__)
|
||||
print(HELP_MESSAGE)
|
||||
|
|
|
|||
|
|
@ -3,7 +3,78 @@ from healthcareio.params import SYS_ARGS
|
|||
import healthcareio.analytics
|
||||
import os
|
||||
import json
|
||||
import time
|
||||
import smart
|
||||
import transport
|
||||
import pandas as pd
|
||||
import numpy as np
|
||||
from healthcareio import x12
|
||||
from healthcareio.export import export
|
||||
from multiprocessing import Process
|
||||
# from flask_socketio import SocketIO, emit, disconnect,send
|
||||
from healthcareio.server import proxy
|
||||
PATH = os.sep.join([os.environ['HOME'],'.healthcareio','config.json'])
|
||||
app = Flask(__name__)
|
||||
# socket_ = SocketIO(app)
|
||||
|
||||
def resume (files):
|
||||
_args = SYS_ARGS['config']['store'].copy()
|
||||
if 'mongo' in SYS_ARGS['config']['store']['type'] :
|
||||
_args['type'] = 'mongo.MongoReader'
|
||||
reader = transport.factory.instance(**_args)
|
||||
_files = []
|
||||
try:
|
||||
pipeline = [{"$match":{"completed":{"$eq":True}}},{"$group":{"_id":"$name"}},{"$project":{"name":"$_id","_id":0}}]
|
||||
_args = {"aggregate":"logs","cursor":{},"allowDiskUse":True,"pipeline":pipeline}
|
||||
_files = reader.read(mongo = _args)
|
||||
_files = [item['name'] for item in _files]
|
||||
except Exception as e :
|
||||
pass
|
||||
|
||||
return list(set(files) - set(_files))
|
||||
|
||||
|
||||
|
||||
def run ():
|
||||
#
|
||||
# let's get the files in the folder (perhaps recursively traverse them)
|
||||
#
|
||||
FILES = []
|
||||
BATCH = int(SYS_ARGS['config']['args']['batch']) #-- number of processes (poorly named variable)
|
||||
|
||||
for root,_dir,f in os.walk(SYS_ARGS['config']['args']['folder']) :
|
||||
if f :
|
||||
FILES += [os.sep.join([root,name]) for name in f]
|
||||
FILES = resume(FILES)
|
||||
FILES = np.array_split(FILES,BATCH)
|
||||
procs = []
|
||||
for FILE_GROUP in FILES :
|
||||
|
||||
FILE_GROUP = FILE_GROUP.tolist()
|
||||
# logger.write({"process":index,"parse":SYS_ARGS['parse'],"file_count":len(row)})
|
||||
# proc = Process(target=apply,args=(row,info['store'],_info,))
|
||||
parser = x12.Parser(PATH) #os.sep.join([PATH,'config.json']))
|
||||
parser.set.files(FILE_GROUP)
|
||||
parser.start()
|
||||
procs.append(parser)
|
||||
SYS_ARGS['procs'] = procs
|
||||
# @socket_.on('data',namespace='/stream')
|
||||
def push() :
|
||||
_args = dict(SYS_ARGS['config']['store'].copy(),**{"type":"mongo.MongoReader"})
|
||||
reader = transport.factory.instance(**_args)
|
||||
pipeline = [{"$group":{"_id":"$parse","claims":{"$addToSet":"$name"}}},{"$project":{"_id":0,"type":"$_id","count":{"$size":"$claims"}}}]
|
||||
_args = {"aggregate":"logs","cursor":{},"allowDiskUse":True,"pipeline":pipeline}
|
||||
r = pd.DataFrame(reader.read(mongo=_args))
|
||||
r = healthcareio.analytics.Apex.apply({"chart":{"type":"donut","axis":{"x":"count","y":"type"}},"data":r})
|
||||
# emit("update",r,json=True)
|
||||
return r
|
||||
# @socket_.on('connect')
|
||||
# def client_connect(**r):
|
||||
# print ('Connection received')
|
||||
# print (r)
|
||||
# push()
|
||||
# pass
|
||||
|
||||
@app.route("/favicon.ico")
|
||||
def _icon():
|
||||
return send_from_directory(os.path.join([app.root_path, 'static','img','logo.svg']),
|
||||
|
|
@ -12,7 +83,7 @@ def _icon():
|
|||
def init():
|
||||
e = SYS_ARGS['engine']
|
||||
sections = {"remits":e.info['835'],"claims":e.info['837']}
|
||||
_args = {"sections":sections}
|
||||
_args = {"sections":sections,"store":SYS_ARGS["config"]["store"],"owner":SYS_ARGS['config']['owner'],"args":SYS_ARGS["config"]["args"]}
|
||||
return render_template("index.html",**_args)
|
||||
@app.route("/format/<id>/<index>",methods=['POST'])
|
||||
def _format(id,index):
|
||||
|
|
@ -21,43 +92,117 @@ def _format(id,index):
|
|||
key = '837' if id == 'claims' else '835'
|
||||
index = int(index)
|
||||
# p = e.info[key][index]
|
||||
p = e.apply(type=id,index=index)
|
||||
|
||||
#
|
||||
p = e.filter(type=id,index=index)
|
||||
|
||||
r = []
|
||||
for item in p[0]['pipeline'] :
|
||||
_item= dict(item)
|
||||
del _item['sql']
|
||||
del _item ['data']
|
||||
|
||||
for item in p['pipeline'] :
|
||||
_item= dict(item)
|
||||
_item = dict(_item,**healthcareio.analytics.Apex.apply(item))
|
||||
del _item['data']
|
||||
if 'apex' in _item or 'html' in _item:
|
||||
r.append(_item)
|
||||
|
||||
r = {"id":p[0]['id'],"pipeline":r}
|
||||
|
||||
r = {"id":p['id'],"pipeline":r}
|
||||
return json.dumps(r),200
|
||||
|
||||
@app.route("/get/<id>/<index>",methods=['GET'])
|
||||
def get(id,index):
|
||||
e = SYS_ARGS['engine']
|
||||
key = '837' if id == 'claims' else '835'
|
||||
index = int(index)
|
||||
# p = e.info[key][index]
|
||||
p = e.apply(type=id,index=index)
|
||||
p = e.filter(type=id,index=index)
|
||||
r = {}
|
||||
for item in p[0]['pipeline'] :
|
||||
|
||||
_item= [dict(item)]
|
||||
|
||||
r[item['label']] = item['data'].to_dict(orient='record')
|
||||
# del _item['sql']
|
||||
# del _item ['data']
|
||||
# print (item['label'])
|
||||
# _item['apex'] = healthcareio.analytics.Apex.apply(item)
|
||||
# if _item['apex']:
|
||||
# r.append(_item)
|
||||
|
||||
# r = {"id":p[0]['id'],"pipeline":r}
|
||||
# r[item['label']] = item['data'].to_dict(orient='record')
|
||||
r[item['label']] = item['data'].to_dict('record')
|
||||
return json.dumps(r),200
|
||||
|
||||
@app.route("/reset",methods=["POST"])
|
||||
def reset():
|
||||
return "1",200
|
||||
@app.route("/data",methods=['GET'])
|
||||
def get_data ():
|
||||
"""
|
||||
This function will return statistical data about the services i.e general statistics about what has/been processed
|
||||
"""
|
||||
HEADER = {"Content-type":"application/json"}
|
||||
_args = SYS_ARGS['config']
|
||||
options = dict(proxy.get.files(_args),**proxy.get.processes(_args))
|
||||
return json.dumps(options),HEADER
|
||||
@app.route("/log/<id>",methods=["POST","PUT","GET"])
|
||||
def log(id) :
|
||||
HEADER = {"Content-Type":"application/json; charset=utf8"}
|
||||
if id == 'params' and request.method in ['PUT', 'POST']:
|
||||
info = request.json
|
||||
_args = {"batch":info['batch'] if 'batch' in info else 1,"resume":True}
|
||||
#
|
||||
# We should update the configuration
|
||||
SYS_ARGS['config']['args'] = _args
|
||||
PATH = os.sep.join([os.environ['HOME'],'.healthcareio','config.json'])
|
||||
write = lambda content: (open(PATH,'w')).write(json.dumps(content))
|
||||
proc = Process(target=write,args=(SYS_ARGS['config'],))
|
||||
proc.start()
|
||||
return "1",HEADER
|
||||
pass
|
||||
@app.route("/io/<id>",methods=['POST'])
|
||||
def io_data(id):
|
||||
if id == 'params' :
|
||||
_args = request.json
|
||||
#
|
||||
# Expecting batch,folder as parameters
|
||||
_args = request.json
|
||||
_args['resume'] = True
|
||||
print (_args)
|
||||
#
|
||||
# We should update the configuration
|
||||
SYS_ARGS['config']['args'] = _args
|
||||
# PATH = os.sep.join([os.environ['HOME'],'.healthcareio','config.json'])
|
||||
try:
|
||||
write = lambda content: (open(PATH,'w')).write(json.dumps(content))
|
||||
proc = Process(target=write,args=(SYS_ARGS['config'],))
|
||||
proc.start()
|
||||
# proc.join()
|
||||
return "1",200
|
||||
except Exception as e :
|
||||
return "0",403
|
||||
pass
|
||||
elif id == 'stop' :
|
||||
stop()
|
||||
pass
|
||||
elif id == 'run' :
|
||||
# run()
|
||||
_args = {"args":SYS_ARGS['config']['args'],"store":SYS_ARGS["config"]["store"]}
|
||||
proxy.run(_args)
|
||||
return "1",200
|
||||
pass
|
||||
|
||||
@app.route("/export")
|
||||
def export_form():
|
||||
_args = {"context":SYS_ARGS['context']}
|
||||
return render_template("store.html",**_args)
|
||||
@app.route("/export",methods=['POST','PUT'])
|
||||
def apply_etl():
|
||||
_info = request.json
|
||||
m = {'s3':'s3.s3Writer','mongo':'mongo.MongoWriter'}
|
||||
if _info :
|
||||
dest_args = {'type':m[_info['type']],"args": _info['content'] }
|
||||
src_args = SYS_ARGS['config']['store']
|
||||
# print (_args)
|
||||
# writer = transport.factory.instance(**_args)
|
||||
proxy.publish(src_args,dest_args)
|
||||
return "1",405
|
||||
|
||||
else:
|
||||
return "0",404
|
||||
@app.route("/update")
|
||||
def update():
|
||||
pass
|
||||
return "0",405
|
||||
@app.route("/reload",methods=['POST'])
|
||||
def reload():
|
||||
# e = SYS_ARGS['engine']
|
||||
|
|
@ -74,11 +219,20 @@ if __name__ == '__main__' :
|
|||
PORT = int(SYS_ARGS['port']) if 'port' in SYS_ARGS else 5500
|
||||
DEBUG= int(SYS_ARGS['debug']) if 'debug' in SYS_ARGS else 0
|
||||
SYS_ARGS['context'] = SYS_ARGS['context'] if 'context' in SYS_ARGS else ''
|
||||
|
||||
#
|
||||
#
|
||||
PATH= SYS_ARGS['config'] if 'config' in SYS_ARGS else os.sep.join([os.environ['HOME'],'.healthcareio','config.json'])
|
||||
#
|
||||
# Adjusting configuration with parameters (batch,folder,resume)
|
||||
if 'args' not in SYS_ARGS['config'] :
|
||||
SYS_ARGS['config']["args"] = {"batch":1,"resume":True,"folder":"/data"}
|
||||
|
||||
SYS_ARGS['procs'] = []
|
||||
|
||||
|
||||
# SYS_ARGS['path'] = os.sep.join([os.environ['HOME'],'.healthcareio','config.json'])
|
||||
e = healthcareio.analytics.engine(PATH)
|
||||
# e.apply(type='claims',serialize=True)
|
||||
e.apply(type='claims',serialize=False)
|
||||
SYS_ARGS['engine'] = e
|
||||
app.run(host='0.0.0.0',port=PORT,debug=DEBUG,threaded=True)
|
||||
|
|
@ -12,8 +12,9 @@ def _icon():
|
|||
def init():
|
||||
e = SYS_ARGS['engine']
|
||||
sections = {"remits":e.info['835'],"claims":e.info['837']}
|
||||
_args = {"sections":sections}
|
||||
return render_template("index.html",**_args)
|
||||
_args = {"sections":sections,"store":SYS_ARGS['config']['store']}
|
||||
print (SYS_ARGS['config']['store'])
|
||||
return render_template("setup.html",**_args)
|
||||
@app.route("/format/<id>/<index>",methods=['POST'])
|
||||
def _format(id,index):
|
||||
|
||||
|
|
|
|||
|
|
@ -0,0 +1,170 @@
|
|||
"""
|
||||
This file serves as proxy to healthcare-io, it will be embedded into the API
|
||||
"""
|
||||
import os
|
||||
import transport
|
||||
import numpy as np
|
||||
from healthcareio import x12
|
||||
import pandas as pd
|
||||
import smart
|
||||
from healthcareio.analytics import Apex
|
||||
import time
|
||||
class get :
|
||||
PROCS = []
|
||||
PATH = os.sep.join([os.environ['HOME'],'.healthcareio','config.json'])
|
||||
@staticmethod
|
||||
def resume (files,args):
|
||||
"""
|
||||
This function will determine the appropriate files to be processed by performing a simple complementary set operation against the logs
|
||||
@TODO: Support data-stores other than mongodb
|
||||
:param files list of files within a folder
|
||||
:param _args configuration
|
||||
"""
|
||||
_args = args['store'].copy()
|
||||
if 'mongo' in _args['type'] :
|
||||
_args['type'] = 'mongo.MongoReader'
|
||||
reader = transport.factory.instance(**_args)
|
||||
_files = []
|
||||
try:
|
||||
pipeline = [{"$match":{"completed":{"$eq":True}}},{"$group":{"_id":"$name"}},{"$project":{"name":"$_id","_id":0}}]
|
||||
_args = {"aggregate":"logs","cursor":{},"allowDiskUse":True,"pipeline":pipeline}
|
||||
_files = reader.read(mongo = _args)
|
||||
_files = [item['name'] for item in _files]
|
||||
except Exception as e :
|
||||
pass
|
||||
print ( [len(list(set(files) - set(_files))),' files to be processed'])
|
||||
return list(set(files) - set(_files))
|
||||
|
||||
@staticmethod
|
||||
def processes(_args):
|
||||
_info = pd.DataFrame(smart.top.read(name='healthcare-io.py'))[['name','cpu','mem']]
|
||||
|
||||
if _info.shape[0] == 0 :
|
||||
_info = pd.DataFrame({"name":["healthcare-io.py"],"cpu":[0],"mem":[0]})
|
||||
# _info = pd.DataFrame(_info.groupby(['name']).sum())
|
||||
# _info['name'] = ['healthcare-io.py']
|
||||
m = {'cpu':'CPU','mem':'RAM','name':'name'}
|
||||
_info.columns = [m[name] for name in _info.columns.tolist()]
|
||||
_info.index = np.arange(_info.shape[0])
|
||||
|
||||
charts = []
|
||||
for label in ['CPU','RAM'] :
|
||||
value = _info[label].sum()
|
||||
df = pd.DataFrame({"name":[label],label:[value]})
|
||||
charts.append (
|
||||
Apex.apply(
|
||||
{"data":df, "chart":{"type":"radial","axis":{"x":label,"y":"name"}}}
|
||||
)['apex']
|
||||
)
|
||||
#
|
||||
# This will update the counts for the processes, upon subsequent requests so as to show the change
|
||||
#
|
||||
N = 0
|
||||
lprocs = []
|
||||
for proc in get.PROCS :
|
||||
if proc.is_alive() :
|
||||
lprocs.append(proc)
|
||||
N = len(lprocs)
|
||||
get.PROCS = lprocs
|
||||
return {"process":{"chart":charts,"counts":N}}
|
||||
@staticmethod
|
||||
def files (_args):
|
||||
_info = smart.folder.read(path='/data')
|
||||
N = _info.files.tolist()[0]
|
||||
if 'mongo' in _args['store']['type'] :
|
||||
store_args = dict(_args['store'].copy(),**{"type":"mongo.MongoReader"})
|
||||
# reader = transport.factory.instance(**_args)
|
||||
|
||||
pipeline = [{"$group":{"_id":"$name","count":{"$sum":{"$cond":[{"$eq":["$completed",True]},1,0]}} }},{"$group":{"_id":None,"count":{"$sum":"$count"}}},{"$project":{"_id":0,"status":"completed","count":1}}]
|
||||
query = {"mongo":{"aggregate":"logs","allowDiskUse":True,"cursor":{},"pipeline":pipeline}}
|
||||
# _info = pd.DataFrame(reader.read(mongo={"aggregate":"logs","allowDiskUse":True,"cursor":{},"pipeline":pipeline}))
|
||||
pipeline = [{"$group":{"_id":"$parse","claims":{"$addToSet":"$name"}}},{"$project":{"_id":0,"type":"$_id","count":{"$size":"$claims"}}}]
|
||||
_query = {"mongo":{"aggregate":"logs","cursor":{},"allowDiskUse":True,"pipeline":pipeline}} #-- distribution claims/remits
|
||||
|
||||
|
||||
else:
|
||||
store_args = dict(_args['store'].copy(),**{"type":"disk.SQLiteReader"})
|
||||
store_args['args']['table'] = 'logs'
|
||||
query= {"sql":"select count(distinct json_extract(data,'$.name')) as count, 'completed' status from logs where json_extract(data,'$.completed') = true"}
|
||||
_query={"sql":"select json_extract(data,'$.parse') as type,count(distinct json_extract(data,'$.name')) as count from logs group by type"} #-- distribution claim/remits
|
||||
reader = transport.factory.instance(**store_args)
|
||||
_info = pd.DataFrame(reader.read(**query))
|
||||
if not _info.shape[0] :
|
||||
_info = pd.DataFrame({"status":["completed"],"count":[0]})
|
||||
_info['count'] = np.round( (_info['count'] * 100 )/N,2)
|
||||
|
||||
charts = [Apex.apply({"data":_info,"chart":{"type":"radial","axis":{"y":"status","x":"count"}}})['apex']]
|
||||
#
|
||||
# Let us classify the files now i.e claims / remits
|
||||
#
|
||||
|
||||
|
||||
# pipeline = [{"$group":{"_id":"$parse","claims":{"$addToSet":"$name"}}},{"$project":{"_id":0,"type":"$_id","count":{"$size":"$claims"}}}]
|
||||
# _args = {"aggregate":"logs","cursor":{},"allowDiskUse":True,"pipeline":pipeline}
|
||||
# r = pd.DataFrame(reader.read(mongo=_args))
|
||||
r = pd.DataFrame(reader.read(**_query)) #-- distribution claims/remits
|
||||
r = Apex.apply({"chart":{"type":"donut","axis":{"x":"count","y":"type"}},"data":r})['apex']
|
||||
r['chart']['height'] = '100%'
|
||||
r['legend']['position'] = 'bottom'
|
||||
|
||||
charts += [r]
|
||||
|
||||
|
||||
return {"files":{"counts":N,"chart":charts}}
|
||||
|
||||
pass
|
||||
#
|
||||
# Process handling ....
|
||||
|
||||
|
||||
def run (_args) :
|
||||
"""
|
||||
This function will run the jobs and insure as processes (as daemons).
|
||||
:param _args system configuration
|
||||
"""
|
||||
FILES = []
|
||||
BATCH = int(_args['args']['batch']) #-- number of processes (poorly named variable)
|
||||
|
||||
for root,_dir,f in os.walk(_args['args']['folder']) :
|
||||
if f :
|
||||
FILES += [os.sep.join([root,name]) for name in f]
|
||||
FILES = get.resume(FILES,_args)
|
||||
FILES = np.array_split(FILES,BATCH)
|
||||
|
||||
for FILE_GROUP in FILES :
|
||||
|
||||
FILE_GROUP = FILE_GROUP.tolist()
|
||||
# logger.write({"process":index,"parse":_args['parse'],"file_count":len(row)})
|
||||
# proc = Process(target=apply,args=(row,info['store'],_info,))
|
||||
parser = x12.Parser(get.PATH) #os.sep.join([PATH,'config.json']))
|
||||
parser.set.files(FILE_GROUP)
|
||||
parser.daemon = True
|
||||
parser.start()
|
||||
get.PROCS.append(parser)
|
||||
time.sleep(3)
|
||||
#
|
||||
# @TODO:consider submitting an update to clients via publish/subscribe framework
|
||||
#
|
||||
return get.PROCS
|
||||
def stop(_args):
|
||||
for job in get.PROCS :
|
||||
if job.is_alive() :
|
||||
job.terminate()
|
||||
get.PROCS = []
|
||||
#
|
||||
# @TODO: consider submitting an update to clients via publish/subscribe framework
|
||||
pass
|
||||
def write(src_args,dest_args,files) :
|
||||
#
|
||||
# @TODO: Support for SQLite
|
||||
pass
|
||||
def publish (src_args,dest_args,folder="/data"):
|
||||
FILES = []
|
||||
for root,_dir,f in os.walk(folder) :
|
||||
if f :
|
||||
FILES += [os.sep.join([root,name]) for name in f]
|
||||
#
|
||||
# @TODO: Add support for SQLite ....
|
||||
|
||||
FILES = np.array_split(FILES,4)
|
||||
|
||||
|
|
@ -1,3 +1,4 @@
|
|||
|
||||
.active {
|
||||
padding:4px;
|
||||
cursor:pointer;
|
||||
|
|
@ -6,3 +7,51 @@
|
|||
.active:hover{
|
||||
border-bottom:2px solid #ff6500;
|
||||
}
|
||||
input[type=text]{
|
||||
border:1px solid transparent;
|
||||
background-color:#f3f3f3;
|
||||
outline: 0px;
|
||||
padding:8px;
|
||||
font-weight:normal;
|
||||
font-family:sans-serif;
|
||||
color:black;
|
||||
}
|
||||
.active-button {
|
||||
display:grid;
|
||||
grid-template-columns: 32px auto;
|
||||
gap:2px;
|
||||
align-items:center;
|
||||
border:2px solid #CAD5E0;
|
||||
cursor:pointer;
|
||||
|
||||
}
|
||||
.active-button i {padding:4px;;}
|
||||
.active-button:hover { border-color:#ff6500}
|
||||
|
||||
.system {display:grid; grid-template-columns: 45% 1px auto; gap:20px; margin-left:5%; width:90%;}
|
||||
.system .status .item {display:grid; grid-template-columns: 75px 8px auto; gap:2px;}
|
||||
.input-form {display:grid; gap:2px;}
|
||||
.input-form .item {display:grid; grid-template-columns: 125px auto; gap:2px; align-items:center;}
|
||||
.input-form .item .label { font-weight:bold; padding-left:10px}
|
||||
.fa-cog {color:#4682B4}
|
||||
.fa-check {color:#00c6b3}
|
||||
.fa-times {color:maroon}
|
||||
|
||||
.code {
|
||||
margin:4px;
|
||||
background:#000000 ;
|
||||
padding:8px;
|
||||
font-family: 'Courier New', Courier, monospace;
|
||||
color:#d3d3d3;
|
||||
font-size:12px;
|
||||
line-height: 2;
|
||||
}
|
||||
|
||||
.tabs {display:grid; grid-template-columns: repeat(3,1fr) auto; gap:0px; align-items:center; text-align: center;}
|
||||
.tab {border:1px solid transparent; border-bottom-color:#D3D3D3; font-weight:bold; padding:4px}
|
||||
|
||||
.tabs .selected {border-color:#CAD5E0; border-bottom-color:transparent; }
|
||||
.system iframe {width:100%; height:100%; border:1px solid transparent;}
|
||||
.data-info {height:90%; padding:8px;}
|
||||
.fa-cloud {color:#4682B4}
|
||||
.fa-database{color:#cc8c91}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,21 @@
|
|||
<div class="dialog">
|
||||
<div class="title-bar">
|
||||
<div class="title bold" ></div>
|
||||
<div class="active close" align="center"><i class="fas fa-times"></i></div>
|
||||
</div>
|
||||
<div class="message">
|
||||
<div class="icon" align="center">
|
||||
<i id="msg-icon"></i>
|
||||
</div>
|
||||
<div class="text"></div>
|
||||
</div>
|
||||
|
||||
<div class="action">
|
||||
<div class="active-button border-round" align="center">
|
||||
<div align="center">
|
||||
<i class="fas fa-check"></i>
|
||||
</div>
|
||||
<div class="bold">Ok</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
Binary file not shown.
|
After Width: | Height: | Size: 10 KiB |
|
|
@ -0,0 +1,75 @@
|
|||
/***
|
||||
* This file will handle the dialog boxes as they and their associated configurations and function binding
|
||||
*/
|
||||
if (!dialog){
|
||||
var dialog = {}
|
||||
}
|
||||
|
||||
dialog.open = function(title,msg,pointer){
|
||||
if (sessionStorage.dialog == null){
|
||||
|
||||
|
||||
var http = HttpClient.instance()
|
||||
http.get(sessionStorage.io_context+'/static/dialog.html',function(x){
|
||||
var html = x.responseText
|
||||
jx.modal.show({html:html,id:'dialog'})
|
||||
$('.dialog .title').text(title)
|
||||
$('.dialog .message .text').text(msg)
|
||||
dialog.status.ask()
|
||||
$('.dialog .action .active-button').on('click',pointer)
|
||||
$('.dialog .title-bar .close').on('click',function(){dialog.close(0)})
|
||||
|
||||
})
|
||||
}else{
|
||||
var html = sessionStorage.dialog
|
||||
jx.modal.show({html:html,id:'dialog'})
|
||||
dialog.status.ask()
|
||||
$('.dialog .action .active-button').on('click',pointer)
|
||||
$('.dialog .title-bar .close').on('click',function(){dialog.close(0)})
|
||||
|
||||
}
|
||||
}
|
||||
dialog.bind = function(pointer){
|
||||
if (pointer == null){
|
||||
pointer = dialog.close
|
||||
}
|
||||
$('.dialog .action .active-button').off()
|
||||
$('.dialog .action .active-button').on('click',pointer)
|
||||
}
|
||||
dialog.close = function(delay){
|
||||
delay = (delay == null)?1750:delay
|
||||
setTimeout(function(){
|
||||
if ( $('.dialog').length > 0){
|
||||
jx.modal.close()
|
||||
}
|
||||
},delay)
|
||||
}
|
||||
dialog.status = {}
|
||||
dialog.status.wait = function(){
|
||||
$('.dialog .action .active-button').hide()
|
||||
}
|
||||
dialog.status.confirm = function(){
|
||||
$('.dialog .action .active-button').show()
|
||||
}
|
||||
dialog.status.busy = function(){
|
||||
$('.dialog .message #msg-icon').removeClass()
|
||||
$('.dialog .message #msg-icon').addClass('fas fa-cog fa-4x fa-spin')
|
||||
|
||||
}
|
||||
dialog.status.fail = function(){
|
||||
$('.dialog .message #msg-icon').removeClass()
|
||||
$('.dialog .message #msg-icon').addClass('fas fa-times fa-4x')
|
||||
}
|
||||
dialog.status.ask = function(){
|
||||
$('.dialog .message #msg-icon').removeClass()
|
||||
$('.dialog .message #msg-icon').addClass('far fa-question-circle fa-4x')
|
||||
}
|
||||
dialog.status.warn = function(){
|
||||
$('.dialog .message #msg-icon').removeClass()
|
||||
$('.dialog .message #msg-icon').addClass('fas fa-exclamation-triangle fa-4x')
|
||||
}
|
||||
dialog.status.success = function(){
|
||||
$('.dialog .message #msg-icon').removeClass()
|
||||
$('.dialog .message #msg-icon').addClass('fas fa-check fa-4x')
|
||||
}
|
||||
|
||||
|
|
@ -0,0 +1,15 @@
|
|||
if (!healthcare) {
|
||||
var healthcare = {io:{}}
|
||||
}
|
||||
healthcare.io = {'dialog':dialog,'confirmed':confirmed,'reset':reset,'update':update,'run':run,'publish':publish}
|
||||
healthcare.io.apply = function(){
|
||||
var value = $('.input-form .item .procs').val()
|
||||
var folder= $('.input-form .item .folder').val()
|
||||
$('.code .batch').html(value)
|
||||
var http = HttpClient.instance()
|
||||
http.setData({"batch":value,"resume":true,"folder":folder},"application/json")
|
||||
http.post(sessionStorage.io_context+'/io/params',function(x){})
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
|
@ -0,0 +1,182 @@
|
|||
/**
|
||||
* This file will depend on dialog.js (soft dependency). Some functions here will make calls to resources in dialog.js
|
||||
*/
|
||||
|
||||
var reset = function(){
|
||||
dialog.open('Healthcare/IO::Parser', 'Are you sure you would like to delete all data parsed? Click Ok to confirm',confirmed.reset)
|
||||
|
||||
}
|
||||
var update= function(){
|
||||
dialog.open('Healthcare/IO::Parser','Update will change parsing configuration. Would you like to continue ?',confirmed.update)
|
||||
}
|
||||
var run = function(){
|
||||
dialog.open('Healthcare/IO::Parser','Preparing parser, confirm to continue',confirmed.run)
|
||||
}
|
||||
var _queue = {socket:null}
|
||||
var confirmed = {}
|
||||
confirmed.run = function(){
|
||||
dialog.status.busy()
|
||||
dialog.status.wait()
|
||||
$('.dialog .message .text').html('Initiating Parsing ...')
|
||||
setTimeout(function(){
|
||||
var http = HttpClient.instance()
|
||||
http.post(sessionStorage.io_context+'/io/run',function(x){
|
||||
// dialog.handler = setInterval(function(){monitor.data()},750)
|
||||
monitor.data()
|
||||
//dialog.close()
|
||||
|
||||
})
|
||||
|
||||
},1000)
|
||||
}
|
||||
confirmed.reset = function(){
|
||||
var uri = sessionStorage.io_context+'/reset'
|
||||
var http= HttpClient.instance()
|
||||
dialog.status.busy()
|
||||
dialog.status.wait()
|
||||
http.post(uri,function(x){
|
||||
setTimeout(function(){
|
||||
if (x.status == 200 && x.responseText == "1"){
|
||||
dialog.status.success()
|
||||
$('.dialog .message .text').html('Reset Healthcare/IO::Parser was successful!<br><div align="center">Dialog will be closing</div>')
|
||||
dialog.close()
|
||||
}else{
|
||||
dialog.status.fail()
|
||||
|
||||
|
||||
}
|
||||
|
||||
},2000)
|
||||
})
|
||||
}
|
||||
|
||||
confirmed.update = function(){
|
||||
var uri = sessionStorage.io_context+'/update'
|
||||
var email = $('#email').val()
|
||||
//
|
||||
//-- validate the email
|
||||
if (email.match(/^([^\s]+)@([^\s@]+)\.(org|com|edu|io)$/i)){
|
||||
dialog.status.wait()
|
||||
dialog.status.busy()
|
||||
var http = HttpClient.instance()
|
||||
http.setData({"email":email},"application/son")
|
||||
setTimeout(function(){
|
||||
http.post(uri,function(x){
|
||||
if(x.status == 200 && x.responseText == "1"){
|
||||
dialog.status.success()
|
||||
}else{
|
||||
|
||||
dialog.status.fail()
|
||||
$('.dialog .message .text').html('Error code '+x.status)
|
||||
dialog.bind()
|
||||
dialog.status.confirm()
|
||||
$('.dialog .title-bar .title').html("Error found")
|
||||
|
||||
}
|
||||
})
|
||||
|
||||
},1000)
|
||||
}else{
|
||||
dialog.status.fail()
|
||||
dialog.bind()
|
||||
$('.dialog .title-bar .title').text("Error found")
|
||||
$('.dialog .message .text').html('Invvalid Email entered')
|
||||
dialog.status.confirm()
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
/**
|
||||
* This namespace is designed to export data to either the cloud or to a database
|
||||
*/
|
||||
var publish={set:{}}
|
||||
publish.post = function(){
|
||||
|
||||
if($('.jxmodal').length > 0){
|
||||
jx.modal.close()
|
||||
}
|
||||
dialog.open('Export/ETL','Please wait')
|
||||
dialog.status.busy()
|
||||
|
||||
var http = HttpClient.instance()
|
||||
http.setData(JSON.parse(sessionStorage.export),"application/json")
|
||||
http.post(sessionStorage.io_context+'/export',function(x){
|
||||
if (x.status != 200){
|
||||
setTimeout(function(){
|
||||
$('.dialog .message .text').html('An error occurred with code '+x.status)
|
||||
dialog.status.fail()
|
||||
dialog.status.wait()
|
||||
|
||||
},1500)
|
||||
|
||||
}
|
||||
//
|
||||
// @TODO: Have progress be monitored for this bad boy i.e open the connection to socket and read in ...
|
||||
//
|
||||
})
|
||||
|
||||
}
|
||||
publish.set.file = function(){
|
||||
var file = $('#file')[0].files[0]
|
||||
$('.file .name').html(file.name)
|
||||
var button = $('.cloud input').prop('disabled',true)
|
||||
var div = $('.cloud .file .fa-file-upload')[0]
|
||||
$(div).empty()
|
||||
$(div).addClass('fas fa-cog fa-spin')
|
||||
var reader = new FileReader()
|
||||
reader.readAsText(file)
|
||||
|
||||
|
||||
reader.onload = function(){
|
||||
_args = {"type":$('.cloud .id').html().trim(),"content":reader.result}
|
||||
// _args = JSON.stringify(_args)
|
||||
if (_args.content.match(/^\{.+/i) == null){
|
||||
content = _args.content.split('\n')[1].split(',')
|
||||
_args.content = {'bucket':'healthcareio','access_key':content[0].trim(),'secret_key':content[1].trim()}
|
||||
}
|
||||
sessionStorage.export = JSON.stringify(_args)
|
||||
}
|
||||
|
||||
reader.onloadend = function(){
|
||||
setTimeout(function(){
|
||||
var div = $('.cloud .file .fa-cog')[0]
|
||||
$(div).empty()
|
||||
$(div).addClass('fas fa-check')
|
||||
$(div).removeClass('fa-spin')
|
||||
// jx.modal.close()
|
||||
|
||||
//setTimeout(jx.modal.close,1500)
|
||||
publish.post()
|
||||
},2000)
|
||||
}
|
||||
}
|
||||
publish.database = {}
|
||||
|
||||
publish.database.init = function(id){
|
||||
//
|
||||
// we are expecting id in {mongo,couch,postgresql,mysql,sqlite}
|
||||
// @TODO: Account for cloud service brokers like dropbox, box, one-drive and google-drive
|
||||
sessionStorage.export = "{}"
|
||||
p = {'id':id}
|
||||
if (id.match(/(mongodb|postgresql|mysql|sqlite|couchdb)/i)){
|
||||
var hide_id = '.store .cloud'
|
||||
var show_id = '.store .database'
|
||||
}else{
|
||||
//
|
||||
// @TODO: generate an error message
|
||||
var show_id = '.store .cloud'
|
||||
var hide_id = '.store .database'
|
||||
|
||||
}
|
||||
var http = HttpClient.instance()
|
||||
http.get(sessionStorage.io_context+'/export',function(x){
|
||||
var html = x.responseText
|
||||
jx.modal.show({'html':html,'id':'dialog'})
|
||||
$(hide_id).hide(function(){
|
||||
$(show_id).show()
|
||||
})
|
||||
|
||||
$('.store .id').text(id)
|
||||
})
|
||||
|
||||
}
|
||||
|
|
@ -12,119 +12,128 @@
|
|||
* Improve on how returned data is handled (if necessary).
|
||||
*/
|
||||
if(!jx){
|
||||
var jx = {}
|
||||
}
|
||||
/**
|
||||
* These are a few parsers that can come in handy:
|
||||
* urlparser: This parser is intended to break down a url parameter string in key,value pairs
|
||||
*/
|
||||
|
||||
function urlparser(url){
|
||||
if(url.toString().match(/\x3F/) != null){
|
||||
url = url.split('\x3F')[1]
|
||||
|
||||
}
|
||||
var p = url.split('&') ;
|
||||
var r = {} ;
|
||||
r.meta = [] ;
|
||||
r.data = {} ;
|
||||
var entry;
|
||||
for(var i=0; i < p.length; i++){
|
||||
entry = p[i] ;
|
||||
key = (entry.match('(.*)=') !=null)? entry.match('(.*)=')[1]:null ;
|
||||
value = (entry.match('=(.*)$') != null)? entry.match('=(.*)$')[1]:null
|
||||
if(key != null){
|
||||
key = key.replace('\x3F','')
|
||||
r.meta.push(key) ;
|
||||
r.data[key] = value ;
|
||||
}
|
||||
}
|
||||
|
||||
return r.data;
|
||||
}
|
||||
|
||||
/**
|
||||
* The following are corrections related to consistency in style & cohesion
|
||||
*/
|
||||
jx.ajax = {}
|
||||
jx.ajax.get = {} ;
|
||||
jx.ajax.debug = null;
|
||||
jx.ajax.get.instance = function(){
|
||||
var factory = function(){
|
||||
this.obj = {}
|
||||
this.obj.headers = {}
|
||||
this.obj.async = true;
|
||||
this.setHeader = function(key,value){
|
||||
if(key.constructor != String && value == null){
|
||||
this.obj.headers = key ;
|
||||
}else{
|
||||
this.obj.headers[key] = value;
|
||||
}
|
||||
}
|
||||
this.setData = function(data){
|
||||
this.obj.data = data;
|
||||
}
|
||||
this.setAsync = function(flag){
|
||||
this.obj.async = (flag == true) ;
|
||||
}
|
||||
this.send = function(url,callback,method){
|
||||
|
||||
if(method == null){
|
||||
method = 'GET'
|
||||
}
|
||||
|
||||
p = jx.ajax.debug != null;
|
||||
q = false;
|
||||
if(p){
|
||||
q = jx.ajax.debug[url] != null;
|
||||
}
|
||||
|
||||
is_debuggable = p && q
|
||||
|
||||
if(is_debuggable){
|
||||
x = {} ;
|
||||
x.responseText = jx.ajax.debug [url] ;
|
||||
callback(x)
|
||||
}else{
|
||||
var http = new XMLHttpRequest() ;
|
||||
http.onreadystatechange = function(){
|
||||
if(http.readyState == 4){
|
||||
|
||||
callback(http)
|
||||
}
|
||||
}
|
||||
//
|
||||
// In order to insure backward compatibility
|
||||
// Previous versions allowed the user to set the variable on the wrapper (poor design)
|
||||
if(this.async != null){
|
||||
this.setAsync(this.async) ;
|
||||
}
|
||||
http.open(method,url,this.obj.async) ;
|
||||
for(key in this.obj.headers){
|
||||
value = this.obj.headers[key] ;
|
||||
|
||||
http.setRequestHeader(key,value)
|
||||
}
|
||||
|
||||
http.send(this.obj.data)
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
this.put = function(url,callback){
|
||||
this.send(url,callback,'PUT') ;
|
||||
}
|
||||
this.get = function(url,callback){
|
||||
this.send(url,callback,'GET') ;
|
||||
}
|
||||
this.post = function(url,callback){
|
||||
this.send(url,callback,'POST') ;
|
||||
}
|
||||
}//-- end of the factory method
|
||||
return new factory() ;
|
||||
}
|
||||
|
||||
//
|
||||
// backward compatibility
|
||||
jx.ajax.getInstance = jx.ajax.get.instance ;
|
||||
var HttpClient = jx.ajax.get ;
|
||||
var jx = {}
|
||||
}
|
||||
/**
|
||||
* These are a few parsers that can come in handy:
|
||||
* urlparser: This parser is intended to break down a url parameter string in key,value pairs
|
||||
*/
|
||||
|
||||
function urlparser(url){
|
||||
if(url.toString().match(/\x3F/) != null){
|
||||
url = url.split('\x3F')[1]
|
||||
|
||||
}
|
||||
var p = url.split('&') ;
|
||||
var r = {} ;
|
||||
r.meta = [] ;
|
||||
r.data = {} ;
|
||||
var entry;
|
||||
for(var i=0; i < p.length; i++){
|
||||
entry = p[i] ;
|
||||
key = (entry.match('(.*)=') !=null)? entry.match('(.*)=')[1]:null ;
|
||||
value = (entry.match('=(.*)$') != null)? entry.match('=(.*)$')[1]:null
|
||||
if(key != null){
|
||||
key = key.replace('\x3F','')
|
||||
r.meta.push(key) ;
|
||||
r.data[key] = value ;
|
||||
}
|
||||
}
|
||||
|
||||
return r.data;
|
||||
}
|
||||
|
||||
/**
|
||||
* The following are corrections related to consistency in style & cohesion
|
||||
*/
|
||||
jx.ajax = {}
|
||||
jx.ajax.get = {} ;
|
||||
jx.ajax.debug = null;
|
||||
jx.ajax.get.instance = function(){
|
||||
var factory = function(){
|
||||
this.obj = {}
|
||||
this.obj.headers = {}
|
||||
this.obj.async = true;
|
||||
this.setHeader = function(key,value){
|
||||
if(key.constructor != String && value == null){
|
||||
this.obj.headers = key ;
|
||||
}else{
|
||||
this.obj.headers[key] = value;
|
||||
}
|
||||
}
|
||||
this.setData = function(data,mimetype){
|
||||
if(mimetype == null)
|
||||
this.obj.data = data;
|
||||
else {
|
||||
this.obj.headers['Content-Type'] = mimetype
|
||||
if(mimetype.match(/application\/json/i)){
|
||||
this.obj.data = JSON.stringify(data)
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
this.setAsync = function(flag){
|
||||
this.obj.async = (flag == true) ;
|
||||
}
|
||||
this.send = function(url,callback,method){
|
||||
|
||||
if(method == null){
|
||||
method = 'GET'
|
||||
}
|
||||
|
||||
p = jx.ajax.debug != null;
|
||||
q = false;
|
||||
if(p){
|
||||
q = jx.ajax.debug[url] != null;
|
||||
}
|
||||
|
||||
is_debuggable = p && q
|
||||
|
||||
if(is_debuggable){
|
||||
x = {} ;
|
||||
x.responseText = jx.ajax.debug [url] ;
|
||||
callback(x)
|
||||
}else{
|
||||
var http = new XMLHttpRequest() ;
|
||||
http.onreadystatechange = function(){
|
||||
if(http.readyState == 4){
|
||||
|
||||
callback(http)
|
||||
}
|
||||
}
|
||||
//
|
||||
// In order to insure backward compatibility
|
||||
// Previous versions allowed the user to set the variable on the wrapper (poor design)
|
||||
if(this.async != null){
|
||||
this.setAsync(this.async) ;
|
||||
}
|
||||
http.open(method,url,this.obj.async) ;
|
||||
for(key in this.obj.headers){
|
||||
value = this.obj.headers[key] ;
|
||||
|
||||
http.setRequestHeader(key,value)
|
||||
}
|
||||
|
||||
http.send(this.obj.data)
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
this.put = function(url,callback){
|
||||
this.send(url,callback,'PUT') ;
|
||||
}
|
||||
this.get = function(url,callback){
|
||||
this.send(url,callback,'GET') ;
|
||||
}
|
||||
this.post = function(url,callback){
|
||||
this.send(url,callback,'POST') ;
|
||||
}
|
||||
}//-- end of the factory method
|
||||
return new factory() ;
|
||||
}
|
||||
|
||||
//
|
||||
// backward compatibility
|
||||
jx.ajax.getInstance = jx.ajax.get.instance ;
|
||||
var HttpClient = jx.ajax.get ;
|
||||
|
||||
|
|
@ -0,0 +1,29 @@
|
|||
<meta charset="utf8">
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1">
|
||||
<meta http-equiv="Cache-Control" content="no-cache, no-store, must-revalidate" />
|
||||
<meta http-equiv="Pragma" content="no-cache" />
|
||||
<meta http-equiv="Expires" content="0" />
|
||||
<link rel="shortcut icon" href="{{context}}/static/img/logo.svg" type="image/icon type">
|
||||
<link rel="stylesheet" href="{{context}}/static/css/default.css" type="text/css">
|
||||
<script src="{{context}}/static/js/jx/rpc.js"></script>
|
||||
<script src="{{context}}/static/js/jx/dom.js"></script>
|
||||
<script src="{{context}}/static/js/jx/utils.js"></script>
|
||||
|
||||
<script src="{{context}}/static/js/jquery.js"></script>
|
||||
|
||||
<script src="https://cdn.jsdelivr.net/npm/apexcharts"></script>
|
||||
<link href="{{context}}/static/css/borders.css" type="text/css" rel="stylesheet">
|
||||
<link href="{{context}}/static/css/fa/css/all.css" type="text/css" rel="stylesheet">
|
||||
<script src="{{context}}/static/css/fa/js/all.js"></script>
|
||||
|
||||
<div class="border-round border menu-bar">
|
||||
<div class="menu">
|
||||
Admin
|
||||
<div class="menu-items border">
|
||||
<div class="item">Setup</div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="menu">
|
||||
Claims & Remits
|
||||
</div>
|
||||
</div>
|
||||
|
|
@ -8,6 +8,7 @@
|
|||
<script src="{{context}}/static/js/jx/rpc.js"></script>
|
||||
<script src="{{context}}/static/js/jx/dom.js"></script>
|
||||
<script src="{{context}}/static/js/jx/utils.js"></script>
|
||||
<script src="{{context}}/static/js/jx/ext/modal.js"></script>
|
||||
|
||||
<script src="{{context}}/static/js/jquery.js"></script>
|
||||
|
||||
|
|
@ -15,6 +16,9 @@
|
|||
<link href="{{context}}/static/css/borders.css" type="text/css" rel="stylesheet">
|
||||
<link href="{{context}}/static/css/fa/css/all.css" type="text/css" rel="stylesheet">
|
||||
<script src="{{context}}/static/css/fa/js/all.js"></script>
|
||||
<script src="{{context}}/static/js/io/dialog.js"></script>
|
||||
<script src="{{context}}/static/js/io/io.js"></script>
|
||||
<script src="{{context}}/static/js/io/healthcare.js"></script>
|
||||
<style>
|
||||
body {
|
||||
font-size:16px;
|
||||
|
|
@ -64,6 +68,7 @@
|
|||
scroll-behavior: smooth;
|
||||
gap:2px;
|
||||
padding:4px;
|
||||
height:95%;
|
||||
|
||||
|
||||
}
|
||||
|
|
@ -81,12 +86,12 @@
|
|||
|
||||
|
||||
}
|
||||
.dashboard .chart-pane .chart {
|
||||
.dashboard .chart-pane .chart2 {
|
||||
max-height:99%;
|
||||
min-height:99%;
|
||||
height:99%;
|
||||
}
|
||||
.dashboard .chart-pane .chart .graph {
|
||||
.dashboard .chart-pane .chart2 .graph {
|
||||
|
||||
|
||||
max-height:100%;
|
||||
|
|
@ -95,7 +100,7 @@
|
|||
|
||||
|
||||
}
|
||||
.dashboard .chart-pane .chart .graph .apexcharts-svg {
|
||||
.dashboard .chart-pane .chart2 .graph .apexcharts-svg {
|
||||
/*border-radius:8px;*/
|
||||
background-color:#f3f3f3;
|
||||
max-height:100%;
|
||||
|
|
@ -161,7 +166,7 @@
|
|||
}
|
||||
|
||||
|
||||
.gradient { background-image: linear-gradient(to top,#F3F3F3, #D3D3D3, #F3F3F3);}
|
||||
.gradient { background-image: linear-gradient(to top,#F3F3F3, #FFFFFF, #FFFFFF);}
|
||||
.white {color:#ffffff}
|
||||
.scalar {
|
||||
display:grid;
|
||||
|
|
@ -172,23 +177,39 @@
|
|||
|
||||
|
||||
|
||||
|
||||
}
|
||||
.shadow {
|
||||
box-shadow: 0px 4px 4px #d3d3d3;
|
||||
}
|
||||
.scalar-title { padding:8px; text-transform: capitalize; }
|
||||
.scalar .value {font-size:32px; font-weight:bold; margin:4%;}
|
||||
.scalar .value {font-size:32px; margin:4%;}
|
||||
.scalar .label {font-size:12px; text-transform:capitalize; text-overflow: ellipsis; display:grid; align-items: flex-end; text-align:center ;}
|
||||
|
||||
|
||||
.monthly_patient_count, .taxonomy_code_distribution, .top_adjustment_codes, .adjustment_reasons {
|
||||
grid-row:1 / span 3 ;
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
</style>
|
||||
<script>
|
||||
sessionStorage.io_context = "{{context}}"
|
||||
var plot = function(id,index){
|
||||
$('.system').slideUp(function(){
|
||||
$('.dashboard').slideDown()
|
||||
})
|
||||
|
||||
var uri = ([sessionStorage.io_context,'format',id,index]).join('/')
|
||||
var httpclient = HttpClient.instance()
|
||||
//
|
||||
// @TODO: Let the user know something is going on .. spinner
|
||||
httpclient.post(uri,function(x){
|
||||
|
||||
var r = JSON.parse(x.responseText)
|
||||
|
||||
var pane = jx.dom.get.instance('DIV')
|
||||
var scalar_pane = jx.dom.get.instance('DIV')
|
||||
pane.id = r.id
|
||||
|
|
@ -202,9 +223,9 @@
|
|||
var p = jx.utils.patterns.visitor(r.pipeline,function(item){
|
||||
var div = jx.dom.get.instance('DIV')
|
||||
var frame = jx.dom.get.instance('DIV')
|
||||
//div.className = 'chart border-round border'
|
||||
frame.className = 'chart border'
|
||||
div.className = 'graph'
|
||||
//div.className = 'chart2 border-round border'
|
||||
frame.className = 'chart2 border ' + item.label.toLowerCase().replace(/ /g,'_')
|
||||
div.className = 'graph '
|
||||
//frame.append(div)
|
||||
//pane.append(frame)
|
||||
|
||||
|
|
@ -212,8 +233,11 @@
|
|||
if(item.apex != null){ item.apex.title = {text:item.label}
|
||||
frame.append(div)
|
||||
pane.append(frame)
|
||||
delete item.apex.colors
|
||||
item.apex.theme= {
|
||||
if (item.apex.colors ){
|
||||
delete item.apex.colors
|
||||
}
|
||||
|
||||
/*item.apex.theme= {
|
||||
mode: 'material',
|
||||
palette: 'palette6',
|
||||
monochrome: {
|
||||
|
|
@ -222,8 +246,11 @@
|
|||
shadeTo: 'light',
|
||||
shadeIntensity: 0.65
|
||||
},
|
||||
}
|
||||
}*/
|
||||
item.apex.chart.height = '100%'
|
||||
delete item.apex.chart.width
|
||||
|
||||
|
||||
return new ApexCharts(div,item.apex)
|
||||
}else{
|
||||
//frame.className = ''
|
||||
|
|
@ -283,50 +310,80 @@
|
|||
}
|
||||
}
|
||||
$(document).ready(function(){
|
||||
$('.dashabord').hide()
|
||||
$('.item-group').slideUp()
|
||||
var index = 0;
|
||||
jx.utils.patterns.visitor($('.menu .items'), function(_item){
|
||||
var node = $(_item).children()[0]
|
||||
$(node).attr('index',index)
|
||||
node.onclick = function(){ toggle($(this).attr('index')) }
|
||||
index += 1;
|
||||
|
||||
})
|
||||
var year = (new Date()).getFullYear()
|
||||
$('.year').text(year)
|
||||
})
|
||||
</script>
|
||||
<title>Healthcare/IO Analytics</title>
|
||||
<body>
|
||||
<div class="pane border">
|
||||
<div class="pane">
|
||||
<div class="header border-bottom">
|
||||
<div class="caption">Healthcare/IO</div>
|
||||
<div class="small">Analytics Dashboard</div>
|
||||
<div class="caption">Healthcare/IO :: Parser</div>
|
||||
<div class="small">Dashboard</div>
|
||||
</div>
|
||||
|
||||
<div class="menu border-right">
|
||||
<div class="menu">
|
||||
|
||||
<div>
|
||||
{% for key in sections %}
|
||||
<div class="items">
|
||||
<div class="bold active" onclick="toggle({{loop.index -1}})" style="margin:4px; height:28px; display:grid; gap:2px; grid-template-columns:auto 32px;">
|
||||
<div>{{key|safe}}</div>
|
||||
<div align="center" class="glyph" >
|
||||
|
||||
<i class="fas fa-angle-down"></i>
|
||||
<div class="items">
|
||||
<div class="bold active" style="margin:4px; height:28px; display:grid; gap:2px; grid-template-columns:auto 32px;">
|
||||
<div>Setup</div>
|
||||
<div align="center" class="glyph" >
|
||||
|
||||
<i class="fas fa-angle-down"></i>
|
||||
</div>
|
||||
</div>
|
||||
<div class="item-group border border-round">
|
||||
<div class="item small active" onclick="setup.open()">Configure Parser</div>
|
||||
|
||||
<div class="item small active" onclick="healthcare.io.reset()">Reset Parser</div>
|
||||
|
||||
</div>
|
||||
</div>
|
||||
<div class="item-group border">
|
||||
|
||||
{% for item in sections[key] %}
|
||||
<div class="item small active" onclick="plot('{{key}}',{{loop.index-1}})">{{item.id}}</div>
|
||||
{% endfor %}
|
||||
</div>
|
||||
</div>
|
||||
{% endfor %}
|
||||
{% for key in sections %}
|
||||
<div class="items">
|
||||
<div class="bold active" style="margin:4px; height:28px; display:grid; gap:2px; grid-template-columns:auto 32px;">
|
||||
<div>{{key|safe}}</div>
|
||||
<div align="center" class="glyph" >
|
||||
|
||||
<i class="fas fa-angle-down"></i>
|
||||
</div>
|
||||
</div>
|
||||
<div class="item-group border border-round">
|
||||
|
||||
{% for item in sections[key] %}
|
||||
<div class="item small active" onclick="plot('{{key}}',{{loop.index-1}})">{{item.id}}</div>
|
||||
{% endfor %}
|
||||
</div>
|
||||
</div>
|
||||
{% endfor %}
|
||||
</div>
|
||||
|
||||
<div style="display:grid; align-items:flex-end">
|
||||
<div class="logs border" style="height:250px"></div>
|
||||
<div style="display:none; align-items:flex-end">
|
||||
<div class="logs chart" style=" align-items:center; display:grid" align="center"></div>
|
||||
|
||||
</div>
|
||||
|
||||
</div>
|
||||
<div class="dashboard">
|
||||
<div>
|
||||
<div class="dashboard" style="display:none"></div>
|
||||
|
||||
</div>
|
||||
{%include 'setup.html' %}
|
||||
|
||||
</div>
|
||||
|
||||
</div>
|
||||
<div class="footer small">
|
||||
© Vanderbilt University Medical Center
|
||||
Healthcare/IO :: Parser © <span class="year"> </span>
|
||||
</div>
|
||||
</body>
|
||||
|
|
@ -0,0 +1,391 @@
|
|||
<style>
|
||||
.system {height:99%; overflow:hidden;}
|
||||
.data-info .board{ height:300px; display:grid; grid-template-columns:auto 200px 200px; gap:20px; align-items:center}
|
||||
/*.board { background-image: linear-gradient(to bottom, #ffffff,#ffffff,#f3f3f3,#d3d3d3d3)}*/
|
||||
.number {font-size:48px; font-family:courier;padding:8px; ;}
|
||||
.etl {display:grid; grid-template-columns: 250px auto; gap:2;}
|
||||
.chart {box-shadow : 0px 1px 4px 2px #d3d3d3; width:200px; height:250px;
|
||||
display:grid; align-items:center;
|
||||
background-image: linear-gradient(to bottom,#f3f3f3,#ffffff);
|
||||
overflow:hidden;
|
||||
|
||||
|
||||
}
|
||||
|
||||
.dialog { width:450px; min-height:200px; display:grid; grid-template-rows: 40px 80% auto; gap:4px}
|
||||
.dialog .title-bar { border-top-left-radius: 8px; border-top-right-radius: 8px ; padding:4px; background-color:#f3f3f3; gap:2px; display:grid; grid-template-columns: auto 32px; align-items:center}
|
||||
.dialog .action {display:grid; align-items: flex-end; padding-left:25%; padding-right:25%;}
|
||||
.dialog .message {display:grid; align-items: center; grid-template-columns: 20% auto;}
|
||||
.dialog .message .text {line-height:2; text-transform: capitalize;}
|
||||
.fa-exclamation-triangle {color:orange}
|
||||
.fa-question-circle{color:#009df7}
|
||||
</style>
|
||||
|
||||
<script src="https://cdn.socket.io/socket.io-1.3.5.js"></script>
|
||||
<script src="{{context}}/static/js/io/dialog.js"></script>
|
||||
<script src="{{context}}/static/js/io/io.js"></script>
|
||||
<script src="{{context}}/static/js/io/healthcare.js"></script>
|
||||
|
||||
<script>
|
||||
var select = function(node){
|
||||
var value = $($(node).children()[0]).attr('data-value')
|
||||
|
||||
jx.utils.patterns.visitor($('.tab'),function(_item){
|
||||
var button = $(_item).children()[0]
|
||||
$(_item).removeClass('selected')
|
||||
//alert([$(button).attr('data-value'),value])
|
||||
if($(button).attr('data-value') == value){
|
||||
$(node).addClass('selected')
|
||||
$('.'+value).show()
|
||||
|
||||
}else{
|
||||
var m = '.'+ $(button).attr('data-value')
|
||||
|
||||
$(m).hide()
|
||||
|
||||
|
||||
}
|
||||
})
|
||||
|
||||
}
|
||||
var monitor = {}
|
||||
monitor.listen = {handler:null}
|
||||
|
||||
monitor.data = function(){
|
||||
var http = HttpClient.instance()
|
||||
http.get("/data",function(x){
|
||||
var r = JSON.parse(x.responseText)
|
||||
var keys = jx.utils.keys(r) //-- process,files
|
||||
for (var i in keys){
|
||||
var prefix = keys[i]
|
||||
if(prefix == 'process'){
|
||||
if(r[prefix].counts != 0){
|
||||
//
|
||||
// We should insure the listeners are enabled
|
||||
if(monitor.listen.handler == null){
|
||||
monitor.listen.handler = setInterval(
|
||||
function(){
|
||||
console.log('running ...')
|
||||
monitor.data()},5000)
|
||||
|
||||
}
|
||||
}else{
|
||||
if (monitor.listen.handler != null){
|
||||
|
||||
clearInterval(monitor.listen.handler)
|
||||
}
|
||||
dialog.close()
|
||||
}
|
||||
}
|
||||
monitor.render(prefix,r[prefix])
|
||||
}
|
||||
})
|
||||
}
|
||||
monitor.render = function(prefix,r){
|
||||
prefix = '.'+prefix
|
||||
|
||||
var div = jx.dom.get.instance('DIV')
|
||||
var label = jx.dom.get.instance('DIV')
|
||||
div.align = 'center'
|
||||
|
||||
div.innerHTML = r.counts
|
||||
div.className = 'number'
|
||||
label.innerHTML = prefix.replace(/\./,'')
|
||||
label.style.textTransform = 'capitalize'
|
||||
label.className = 'small bold border-top'
|
||||
div.append(label)
|
||||
|
||||
|
||||
$(prefix + ' .board').empty()
|
||||
$(prefix+' .board').append(div)
|
||||
|
||||
var charts = jx.utils.patterns.visitor(r.chart,function(option){
|
||||
|
||||
|
||||
var div = jx.dom.get.instance('div')
|
||||
|
||||
div.className = 'chart'
|
||||
div.align='center'
|
||||
$(prefix+' .board').append(div)
|
||||
|
||||
var chart = new ApexCharts($(div)[0],option)
|
||||
//chart.render()
|
||||
div.chart = chart
|
||||
|
||||
return chart
|
||||
|
||||
})
|
||||
var observers = jx.utils.patterns.visitor(charts,function(_item){
|
||||
var m = function(_chart){
|
||||
this.chart = _chart ;
|
||||
this.apply = function(caller){this.chart.render();
|
||||
caller.notify()
|
||||
}
|
||||
}
|
||||
return new m(_item)
|
||||
})
|
||||
jx.utils.patterns.observer(observers,'apply')
|
||||
//jx.utils.patterns.iterator(charts,'render')
|
||||
|
||||
/*setTimeout(function(){
|
||||
jx.utils.patterns.visitor(charts,function(_item){_item.render()})
|
||||
},1000) */
|
||||
}
|
||||
var setup = {}
|
||||
setup.open = function(){
|
||||
$('.dashboard').slideUp(
|
||||
function(){
|
||||
$('.setup').slideDown()
|
||||
}
|
||||
)
|
||||
|
||||
}
|
||||
|
||||
$(document).ready(function(){
|
||||
/*var shandler = new io();
|
||||
|
||||
if (shandler.disconnected ==false){
|
||||
shandler.disconnect()
|
||||
}
|
||||
var socket = io.connect()
|
||||
socket.on('connect',function(e){
|
||||
socket.emit('connect',{name:'steve'})
|
||||
})
|
||||
socket.on('update',function(e){
|
||||
console.log(e)
|
||||
console.log()
|
||||
})
|
||||
var socket = io.connect('http://localhost:81',{cors:{AccessControlAllowOrigin:'*'}}) //('http://localhost:81/stream')
|
||||
socket.on('procs',function(e){
|
||||
|
||||
})
|
||||
socket.on('data',function(e){
|
||||
|
||||
$('.logs').empty()
|
||||
var div = $('.logs')
|
||||
|
||||
var option = e.apex
|
||||
option.plotOptions.pie.size = 220
|
||||
option.plotOptions.pie = {dataLabels: {show:true,name:{show:true},value:{show:true}}}
|
||||
|
||||
option.legend.show = false
|
||||
console.log(option)
|
||||
c = new ApexCharts(div[0],option)
|
||||
c.render()
|
||||
socket.emit("procs",{"name":"steve"})
|
||||
})*/
|
||||
|
||||
select($('.tab')[0])
|
||||
monitor.data()
|
||||
|
||||
$('.email').text($('#email').val())
|
||||
})
|
||||
</script>
|
||||
|
||||
|
||||
<div class="system setup">
|
||||
<div class="status">
|
||||
|
||||
{% if not store.type %}
|
||||
<div >
|
||||
<span class="caption bold border-bottom" style="padding-right:10">Current Configuration</span>
|
||||
<p></p>
|
||||
<div style="display:grid; align-items:center; grid-template-columns:32px auto;">
|
||||
<i class="fa fa-times" style="font-size:28; margin:4px;"></i> <span>System needs to be initialized !</span>
|
||||
</div>
|
||||
<p></p>
|
||||
<div class="active-button border-round" style="width:50%">
|
||||
<div class="icon">
|
||||
<i class="fas fa-cog" style="font-size:28"></i>
|
||||
</div>
|
||||
<div class="bold" align="center">Initialize</div>
|
||||
</div>
|
||||
</div>
|
||||
{% else %}
|
||||
<div class="border-right">
|
||||
|
||||
<span class="caption bold border-bottom" style="padding-right:10">Current Configuration</span>
|
||||
<p>
|
||||
</p>
|
||||
<div class="item" style="display:grid; align-items:center">
|
||||
<div class="bold" style="text-transform: capitalize;">Owner </div><div class="bold">:</div>
|
||||
<div>
|
||||
|
||||
<input type="text" id="email" value="{{owner}}">
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div class="item">
|
||||
<div class="bold" style="text-transform: capitalize;">store</div><div class="bold">:</div>
|
||||
<div class="">{{store.type}}</div>
|
||||
</div>
|
||||
<p></p>
|
||||
<div class="active-button border-round" style="width:50%" onclick="healthcare.io.update()">
|
||||
<div class="icon">
|
||||
<I class="fas fa-download" style="font-size:28"></I>
|
||||
</div>
|
||||
<div class="bold" align="center">Update Config</div>
|
||||
</div>
|
||||
<p>
|
||||
<div class="code">
|
||||
#<br>
|
||||
healthcare-io.py --init <span class="email"></span> --store mongo
|
||||
</div>
|
||||
</p>
|
||||
</div>
|
||||
|
||||
{%endif%}
|
||||
<p></p>
|
||||
<br>
|
||||
<div class="border-right">
|
||||
<span class="caption bold border-bottom" style="padding-right:10">Manage Plan</span>
|
||||
<p></p>
|
||||
<div style="line-height: 2;">Insure your account is tied to a cloud service provider.
|
||||
<br>We support <span class="bold">google-drive, dropbox, one-drive or box. </span>
|
||||
</div>
|
||||
<p>
|
||||
<div class="bold active-button border-round" style="width:50%" onclick="jx.modal.show({url:'https://healthcareio.the-phi.com/store/healthcareio/plans'})">
|
||||
<div>
|
||||
<img src="{{context}}/static/img/logo.svg" />
|
||||
</div>
|
||||
<div align="center">Open Plan Console</div>
|
||||
</div>
|
||||
</p>
|
||||
|
||||
</div>
|
||||
<br>
|
||||
<div class="border-right" style="height:30%"></div>
|
||||
</div>
|
||||
<div class="_border-right"></div>
|
||||
<div >
|
||||
<span class="caption bold border-bottom" style="padding-right:10">
|
||||
Manage Processes</span>
|
||||
<p>
|
||||
<div class="input-form" style="grid-template-columns: 30% auto;">
|
||||
<div class="item" style="grid-row:1; grid-column:1; ">
|
||||
<div class="label">Process #</div>
|
||||
<input type="text" class="procs batch"placeholder="#" style="width:64px; text-align:right" value="{{args.batch}}" onchange="healthcare.io.apply()"/>
|
||||
</div>
|
||||
<div class="item" style="grid-row:1; grid-column:2 ">
|
||||
<div class="label">Folder #</div>
|
||||
<input type="text" placeholder="Process counts" value="/data"/ class="data folder" disabled>
|
||||
</div>
|
||||
|
||||
</div>
|
||||
<div style="display:grid; grid-template-columns:repeat(2,215px); gap:2px;">
|
||||
<div class="active-button border-round bold io-apply" style="margin-top:32; display:none" onclick="healthcare.io.apply()">
|
||||
<div class="icon"><i class="far fa-save" style="font-size:28; color:#4682B4"></i></div>
|
||||
<div align="center">Apply</div>
|
||||
</div>
|
||||
<div class="active-button border-round bold" style="margin-top:32" onclick="healthcare.io.stop()">
|
||||
<i class="far fa-stop-circle" style="font-size:28; color:maroon"></i>
|
||||
|
||||
<div align="center">Stop</div>
|
||||
</div>
|
||||
<div class="active-button border-round bold" style="margin-top:32" onclick="healthcare.io.run()">
|
||||
<i class="fas fa-running" style="font-size:28; color:green"></i>
|
||||
<div align="center">Run</div>
|
||||
</div>
|
||||
|
||||
</div>
|
||||
|
||||
</p>
|
||||
<p>
|
||||
<div class="code">
|
||||
<div class="bold"># The command that will be executed</div>
|
||||
<div>healthcare-io.py --parse --folder /data --batch <span class="batch">{{args.batch}}</span></div>
|
||||
</div>
|
||||
</p>
|
||||
<p>
|
||||
<div style="display:grid; grid-template-columns:auto 48px ; gap:2px">
|
||||
<div class="bold caption border-bottom">Process Monitoring</div>
|
||||
<div class="active" align="center" title="reload" onclick="monitor.data()"><i class="fas fa-sync"></i></div>
|
||||
</div>
|
||||
<div class="small">Powered by smart-top</div>
|
||||
<p></p>
|
||||
<div class="tabs">
|
||||
<div class="tab selected" onclick="select(this)">
|
||||
<div class="active" data-value="process" >
|
||||
<i class="far fa-clock" style="color:maroon"></i>
|
||||
<span>Process</span>
|
||||
</div>
|
||||
</div>
|
||||
<div class="tab" onclick="select(this)">
|
||||
<div class="active" data-value="files"><i class="fas fa-file-alt"></i> Files</div>
|
||||
</div>
|
||||
<div class="tab" onclick="select(this)">
|
||||
<div class="active" data-value="export"><i class="fas fa-upload"></i> Export</div>
|
||||
</div>
|
||||
|
||||
</div>
|
||||
<div class="data-info">
|
||||
<div class="process ">
|
||||
|
||||
<div class="board"></div>
|
||||
<div class="small" align="center">
|
||||
<div class="border-top bold" style="color:#4682B4;">Running Processes and resource usage</div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="files">
|
||||
<div class="board"></div>
|
||||
<div class="small" align="center">
|
||||
<div class="border-top bold" style="color:#4682B4;">Summary of files found and processed</div>
|
||||
</div>
|
||||
|
||||
</div>
|
||||
<div class="export">
|
||||
<p></p>
|
||||
<div class="etl">
|
||||
<div class="" >
|
||||
<div class="menu" style="position:absolute; width:200">
|
||||
<div class="items ">
|
||||
<div class="bold active" style="display:grid; grid-template-columns:80% auto;">
|
||||
<span>
|
||||
<i class="fas fa-cloud"></i>
|
||||
Cloud</span>
|
||||
<span class="glyph">
|
||||
<i class="fas fa-angle-down"></i>
|
||||
</span>
|
||||
</div>
|
||||
<div class="item-group border-round border small">
|
||||
<div class="item" onclick="healthcare.io.publish.database.init('s3')">AWS S3</div>
|
||||
<div class="item" onclick="healthcare.io.publish.database.init('bigquery')">Google Bigquery</div>
|
||||
|
||||
</div>
|
||||
</div>
|
||||
<div class="items ">
|
||||
<div class="bold active"style="display:grid; grid-template-columns:80% auto;">
|
||||
<span>
|
||||
<i class="fas fa-database"></i>
|
||||
Database</span>
|
||||
<span class="glyph">
|
||||
<i class="fas fa-angle-down"></i>
|
||||
</span>
|
||||
</div>
|
||||
<div class="item-group border-round border small">
|
||||
<div class="bold">SQL</div>
|
||||
|
||||
<div class="item" style="margin-left:15px; margin-right:32px" onclick="healthcare.io.publish.database.init('postgresql')">PostgreSQL</div>
|
||||
<div class="item" style="margin-left:15px; margin-right:32px" onclick="healthcare.io.publish.database.init('mysql')">MySQL</div>
|
||||
|
||||
|
||||
|
||||
<div class="bold">NoSQL</div>
|
||||
<div class="item" style="margin-left:15px; margin-right:32px" onclick="healthcare.io.publish.database.init('mongodb')">Mongodb</div>
|
||||
<div class="item" style="margin-left:15px; margin-right:32px" onclick="healthcare.io.publish.database.init('couchdb')">Couchdb</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div>
|
||||
<div class="active-button border-round" style="width:50%">
|
||||
<div class="icon"><i class="fas fa-running" style="font-size:28"></i></div> <div class="bold" align="center">Start</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
</div>
|
||||
</div>
|
||||
</p>
|
||||
</div>
|
||||
</div>
|
||||
|
|
@ -0,0 +1,78 @@
|
|||
<link href="{{context}}/static/css/fa/css/all.css" type="text/css" rel="stylesheet">
|
||||
<link rel="stylesheet" href="{{context}}/static/css/default.css" type="text/css">
|
||||
<link href="{{context}}/static/css/borders.css" type="text/css" rel="stylesheet">
|
||||
<style>
|
||||
.form , input{font-family:sans-serif; font-size:18px}
|
||||
.form .small {font-size:14px; line-height:2}
|
||||
.mongo, .couchdb{
|
||||
|
||||
display:grid;
|
||||
gap:2px;
|
||||
}
|
||||
.grid-full {display:grid; grid-template-columns: 100%;}
|
||||
.grid-split-half {display:grid; grid-template-columns: 50% 50%; gap:2px;}
|
||||
.store .title-bar {display:grid; align-items:center; grid-template-columns: auto 32px; padding:8px;}
|
||||
.file {display:grid; align-items:center; grid-template-columns: 40% auto; gap:2px; font-family:sans-serif; padding:8px}
|
||||
.file input {display:none}
|
||||
.file label {padding:8px;}
|
||||
|
||||
|
||||
</style>
|
||||
<div class="store">
|
||||
|
||||
<div class="title-bar">
|
||||
<div class="caption">Export Module <span class="bold id"></span></div>
|
||||
<div class="active" align="center" onclick="jx.modal.close()">
|
||||
<i class="fas fa-times"></i>
|
||||
</div>
|
||||
</div>
|
||||
<p></p>
|
||||
|
||||
<div class="cloud form border-round">
|
||||
<div class="small border-round">
|
||||
Please provide select access-key file or service account key file to perform ETL
|
||||
to <span class="bold id"></span>. <br>The files will be re-created in JSON format
|
||||
</div>
|
||||
<div class="file">
|
||||
<label class="active-button border-round">
|
||||
<span style="font-family:sans-serif">
|
||||
<i class="icon fas fa-file-upload" style="font-size:24px"></i>
|
||||
</span>
|
||||
<div>Select key file</div>
|
||||
<input type="file" id="file" aria-label="File browser example" onchange="publish.set.file()">
|
||||
|
||||
</label>
|
||||
<div class="name small black bold" style="padding-left:24px"></div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="database form border-round">
|
||||
<div class="small border-round">
|
||||
Tables / collections will be automatically inferred in the <span class="bold id"></span>
|
||||
</div>
|
||||
<div class="mongo">
|
||||
|
||||
<div class="grid-split-half">
|
||||
<input type="text" class="host" placeholder="host:port"/>
|
||||
<input type="text" class="host" placeholder="database"/>
|
||||
</div>
|
||||
|
||||
<div class="grid-split-half">
|
||||
<input type="text" placeholder="user"/>
|
||||
|
||||
<input type="text" placeholder="password"/>
|
||||
</div>
|
||||
|
||||
</div>
|
||||
<p></p>
|
||||
<div>
|
||||
<br>
|
||||
<div class="active-button border-round" style="margin-left:30%; margin-right:30%">
|
||||
<div class="icon">
|
||||
<i class="fas fa-check"></i>
|
||||
</div>
|
||||
<div class="bold" align="center">Export Now</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
</div>
|
||||
</div>
|
||||
|
|
@ -24,6 +24,7 @@ import sys
|
|||
from itertools import islice
|
||||
from multiprocessing import Process
|
||||
import transport
|
||||
import jsonmerge
|
||||
class void :
|
||||
pass
|
||||
class Formatters :
|
||||
|
|
@ -49,8 +50,9 @@ class Formatters :
|
|||
"""
|
||||
This function is designed to split an x12 row and
|
||||
"""
|
||||
value = []
|
||||
if row.startswith(prefix) is False:
|
||||
value = []
|
||||
|
||||
|
||||
for row_value in row.replace('~','').split(sep) :
|
||||
|
||||
|
|
@ -65,10 +67,12 @@ class Formatters :
|
|||
else :
|
||||
|
||||
value.append(row_value.replace('\n',''))
|
||||
return [xchar.replace('\r','') for xchar in value] #row.replace('~','').split(sep)
|
||||
value = [xchar.replace('\r','') for xchar in value] #row.replace('~','').split(sep)
|
||||
else:
|
||||
|
||||
return [ [prefix]+ self.split(item,'>') for item in row.replace('~','').split(sep)[1:] ]
|
||||
value = [ [prefix]+ self.split(item,'>') for item in row.replace('~','').split(sep)[1:] ]
|
||||
|
||||
return value if type(value) == list and type(value[0]) != list else value[0]
|
||||
def get_config(self,config,row):
|
||||
"""
|
||||
This function will return the meaningfull parts of the configuration for a given item
|
||||
|
|
@ -92,7 +96,6 @@ class Formatters :
|
|||
if _row[0] in config['SIMILAR'] :
|
||||
key = config['SIMILAR'][_row[0]]
|
||||
_info = config[key]
|
||||
|
||||
return _info
|
||||
|
||||
def hash(self,value):
|
||||
|
|
@ -130,7 +133,7 @@ class Formatters :
|
|||
terms = value[1].split('>')
|
||||
return {'type':terms[0],'code':terms[1],"amount":float(value[2])}
|
||||
else:
|
||||
|
||||
|
||||
return {"code":value[2],"type":value[1],"amount":float(value[3])}
|
||||
def sv2(self,value):
|
||||
#
|
||||
|
|
@ -170,27 +173,56 @@ class Formatters :
|
|||
def pos(self,value):
|
||||
"""
|
||||
formatting place of service information within a segment (REF)
|
||||
@TODO: In order to accomodate the other elements they need to be specified in the configuration
|
||||
Otherwise it causes problems on export
|
||||
"""
|
||||
|
||||
xchar = '>' if '>' in value else ':'
|
||||
x = value.split(xchar)
|
||||
x = {"code":x[0],"indicator":x[1],"frequency":x[2]} if len(x) == 3 else {"code":x[0],"indicator":None,"frequency":None}
|
||||
return x
|
||||
return x['code']
|
||||
class Parser (Process):
|
||||
def __init__(self,path):
|
||||
"""
|
||||
:path path of the configuration file (it can be absolute)
|
||||
"""
|
||||
Process.__init__(self)
|
||||
self.utils = Formatters()
|
||||
self.get = void()
|
||||
self.get.value = self.get_map
|
||||
self.get.default_value = self.get_default_value
|
||||
_config = json.loads(open(path).read())
|
||||
|
||||
self._custom_config = self.get_custom(path)
|
||||
self.config = _config['parser']
|
||||
self.store = _config['store']
|
||||
|
||||
self.files = []
|
||||
self.set = void()
|
||||
self.set.files = self.set_files
|
||||
self.emit = void()
|
||||
self.emit.pre = None
|
||||
self.emit.post = None
|
||||
def get_custom(self,path) :
|
||||
"""
|
||||
:path path of the configuration file (it can be absolute)
|
||||
"""
|
||||
#
|
||||
#
|
||||
_path = path.replace('config.json','')
|
||||
if _path.endswith(os.sep) :
|
||||
_path = _path[:-1]
|
||||
|
||||
_config = {}
|
||||
_path = os.sep.join([_path,'custom'])
|
||||
if os.path.exists(_path) :
|
||||
|
||||
files = os.listdir(_path)
|
||||
if files :
|
||||
fullname = os.sep.join([_path,files[0]])
|
||||
|
||||
_config = json.loads ( (open(fullname)).read() )
|
||||
return _config
|
||||
|
||||
def set_files(self,files):
|
||||
self.files = files
|
||||
def get_map(self,row,config,version=None):
|
||||
|
|
@ -241,15 +273,18 @@ class Parser (Process):
|
|||
|
||||
value = {key:value} if key not in value else value
|
||||
|
||||
|
||||
else:
|
||||
if 'syn' in config and value in config['syn'] :
|
||||
value = config['syn'][value]
|
||||
if type(value) == dict :
|
||||
|
||||
object_value = dict(object_value, **value)
|
||||
|
||||
else:
|
||||
|
||||
object_value[key] = value
|
||||
|
||||
else:
|
||||
#
|
||||
# we are dealing with a complex object
|
||||
|
|
@ -269,25 +304,35 @@ class Parser (Process):
|
|||
return object_value
|
||||
def apply(self,content,_code) :
|
||||
"""
|
||||
:file content i.e a segment with the envelope
|
||||
:_code 837 or 835 (helps get the appropriate configuration)
|
||||
:content content of a file i.e a segment with the envelope
|
||||
:_code 837 or 835 (helps get the appropriate configuration)
|
||||
"""
|
||||
util = Formatters()
|
||||
# header = default_value.copy()
|
||||
value = {}
|
||||
|
||||
for row in content[:] :
|
||||
|
||||
|
||||
row = util.split(row.replace('\n','').replace('~',''))
|
||||
_info = util.get.config(self.config[_code][0],row)
|
||||
|
||||
if self._custom_config and _code in self._custom_config:
|
||||
_cinfo = util.get.config(self._custom_config[_code],row)
|
||||
else:
|
||||
_cinfo = {}
|
||||
# _info = self.consolidate(row=row,type=_code,config=_info,util=util)
|
||||
# print ([row[0],_info])
|
||||
# print ()
|
||||
# continue
|
||||
# _cinfo = util.get.config(self._custom_config[_code],row)
|
||||
|
||||
|
||||
if _info :
|
||||
|
||||
try:
|
||||
|
||||
_info = jsonmerge.merge(_info,_cinfo)
|
||||
tmp = self.get.value(row,_info)
|
||||
# if 'P1080351470' in content[0] and 'PLB' in row:
|
||||
# print (_info)
|
||||
# print (row)
|
||||
# print (tmp)
|
||||
|
||||
if not tmp :
|
||||
continue
|
||||
if 'label' in _info :
|
||||
|
|
@ -300,10 +345,10 @@ class Parser (Process):
|
|||
else:
|
||||
if label not in value:
|
||||
value[label] = [tmp]
|
||||
elif len(list(tmp.keys())) == 1 :
|
||||
# print "\t",len(claim[label]),tmp
|
||||
index = len(value[label]) -1
|
||||
value[label][index] = dict(value[label][index],**tmp)
|
||||
# elif len(list(tmp.keys())) == 1 :
|
||||
# # print "\t",len(claim[label]),tmp
|
||||
# index = len(value[label]) -1
|
||||
# value[label][index] = dict(value[label][index],**tmp)
|
||||
else:
|
||||
value[label].append(tmp)
|
||||
tmp['_index'] = len(value[label]) -1
|
||||
|
|
@ -319,7 +364,9 @@ class Parser (Process):
|
|||
elif 'field' in _info :
|
||||
|
||||
name = _info['field']
|
||||
value[name] = tmp
|
||||
# value[name] = tmp
|
||||
value = jsonmerge.merge(value,{name:tmp})
|
||||
|
||||
else:
|
||||
|
||||
|
||||
|
|
@ -327,13 +374,14 @@ class Parser (Process):
|
|||
|
||||
pass
|
||||
except Exception as e :
|
||||
|
||||
|
||||
print ('__',e.args)
|
||||
pass
|
||||
|
||||
return value if value else {}
|
||||
|
||||
def get_default_value(self,content,_code):
|
||||
|
||||
util = Formatters()
|
||||
TOP_ROW = content[1].split('*')
|
||||
CATEGORY= content[2].split('*')[1].strip()
|
||||
|
|
@ -352,6 +400,8 @@ class Parser (Process):
|
|||
value['payer_id'] = SENDER_ID
|
||||
else:
|
||||
value['provider_id'] = SENDER_ID
|
||||
#
|
||||
# Let's parse this for default values
|
||||
return value
|
||||
|
||||
def read(self,filename) :
|
||||
|
|
@ -374,8 +424,14 @@ class Parser (Process):
|
|||
INITIAL_ROWS = file[:4]
|
||||
if len(INITIAL_ROWS) < 3 :
|
||||
return None,[{"name":filename,"completed":False}],None
|
||||
section = 'HL' if INITIAL_ROWS[1].split('*')[1] == 'HC' else 'CLP'
|
||||
_code = '837' if section == 'HL' else '835'
|
||||
# section = 'HL' if INITIAL_ROWS[1].split('*')[1] == 'HC' else 'CLP'
|
||||
# _code = '837' if section == 'HL' else '835'
|
||||
# print ([_code,section])
|
||||
_code = INITIAL_ROWS[2].split('*')[1].strip()
|
||||
# section = 'CLP' if _code == '835' else 'HL'
|
||||
section = self.config[_code][0]['SECTION'].strip()
|
||||
#
|
||||
# adjusting the
|
||||
DEFAULT_VALUE = self.get.default_value(INITIAL_ROWS,_code)
|
||||
DEFAULT_VALUE['name'] = filename.strip()
|
||||
#
|
||||
|
|
@ -383,22 +439,30 @@ class Parser (Process):
|
|||
# index 1 identifies file type i.e CLM for claim and CLP for remittance
|
||||
segment = []
|
||||
index = 0;
|
||||
_toprows = []
|
||||
for row in file :
|
||||
row = row.replace('\r','')
|
||||
if not segment and not row.startswith(section):
|
||||
_toprows += [row]
|
||||
if row.startswith(section) and not segment:
|
||||
|
||||
segment = [row]
|
||||
|
||||
continue
|
||||
|
||||
elif segment and not row.startswith(section):
|
||||
|
||||
segment.append(row)
|
||||
|
||||
|
||||
if len(segment) > 1 and row.startswith(section):
|
||||
#
|
||||
# process the segment somewhere (create a thread maybe?)
|
||||
#
|
||||
# default_claim = dict({"index":index},**DEFAULT_VALUE)
|
||||
# print (_toprows)
|
||||
_claim = self.apply(segment,_code)
|
||||
|
||||
# if _claim['claim_id'] == 'P1080351470' :
|
||||
# print (_claim)
|
||||
# _claim = dict(DEFAULT_VALUE,**_claim)
|
||||
|
|
@ -418,12 +482,14 @@ class Parser (Process):
|
|||
claim = self.apply(segment,_code)
|
||||
if claim :
|
||||
claim['index'] = len(claims)
|
||||
claim = jsonmerge.merge(claim,self.apply(_toprows,_code))
|
||||
claims.append(dict(DEFAULT_VALUE,**claim))
|
||||
if type(file) != list :
|
||||
file.close()
|
||||
|
||||
# x12_file = open(filename.strip(),errors='ignore').read().split('\n')
|
||||
except Exception as e:
|
||||
|
||||
logs.append ({"parse":_code,"completed":False,"name":filename,"msg":e.args[0]})
|
||||
return [],logs,None
|
||||
|
||||
|
|
@ -432,6 +498,9 @@ class Parser (Process):
|
|||
# self.finish(claims,logs,_code)
|
||||
return claims,logs,_code
|
||||
def run(self):
|
||||
if self.emit.pre :
|
||||
self.emit.pre()
|
||||
|
||||
for filename in self.files :
|
||||
content,logs,_code = self.read(filename)
|
||||
self.finish(content,logs,_code)
|
||||
|
|
@ -441,14 +510,22 @@ class Parser (Process):
|
|||
if args['type'] == 'mongo.MongoWriter' :
|
||||
args['args']['doc'] = 'claims' if _code == '837' else 'remits'
|
||||
_args['args']['doc'] = 'logs'
|
||||
else:
|
||||
args['args']['table'] = 'claims' if _code == '837' else 'remits'
|
||||
_args['args']['table'] = 'logs'
|
||||
|
||||
if content :
|
||||
writer = transport.factory.instance(**args)
|
||||
writer.write(content)
|
||||
writer.close()
|
||||
if logs :
|
||||
|
||||
logger = transport.factory.instance(**_args)
|
||||
logger.write(logs)
|
||||
|
||||
logger.close()
|
||||
if self.emit.post :
|
||||
self.emit.post(content,logs)
|
||||
|
||||
|
||||
|
||||
|
|
|
|||
5
setup.py
5
setup.py
|
|
@ -8,14 +8,15 @@ import sys
|
|||
def read(fname):
|
||||
return open(os.path.join(os.path.dirname(__file__), fname)).read()
|
||||
args = {
|
||||
"name":"healthcareio","version":"1.3.7",
|
||||
"name":"healthcareio","version":"1.4.8",
|
||||
"author":"Vanderbilt University Medical Center",
|
||||
"author_email":"steve.l.nyemba@vumc.org",
|
||||
"include_package_data":True,
|
||||
"license":"MIT",
|
||||
"packages":find_packages(),
|
||||
"keywords":["healthcare","edi","x12","analytics","835","837","data","transport","protocol"]
|
||||
}
|
||||
args["install_requires"] = ['seaborn','jinja2', 'weasyprint','data-transport@git+https://dev.the-phi.com/git/steve/data-transport.git','pymongo','numpy','cloudant','pika','boto','flask-session','smart_open']
|
||||
args["install_requires"] = ['flask-socketio','seaborn','jinja2','jsonmerge', 'weasyprint','data-transport@git+https://healthcareio.the-phi.com/git/code/transport.git','pymongo','numpy','cloudant','pika','boto','botocore','flask-session','smart_open','smart-top@git+https://healthcareio.the-phi.com/git/code/smart-top.git@data-collector']
|
||||
args['url'] = 'https://hiplab.mc.vanderbilt.edu'
|
||||
args['scripts']= ['healthcareio/healthcare-io.py']
|
||||
# args['entry_points'] = {
|
||||
|
|
|
|||
Loading…
Reference in New Issue