942 lines
20 KiB
HTML
942 lines
20 KiB
HTML
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<!DOCTYPE html>
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<html>
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<head>
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<meta charset="utf-8" />
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<meta name="generator" content="pandoc" />
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<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
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<title>cdm54Changes.utf8</title>
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<script src="site_libs/header-attrs-2.6/header-attrs.js"></script>
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<script src="site_libs/jquery-1.11.3/jquery.min.js"></script>
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<meta name="viewport" content="width=device-width, initial-scale=1" />
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<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
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<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
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<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
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<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
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<script src="site_libs/jqueryui-1.11.4/jquery-ui.min.js"></script>
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<link href="site_libs/tocify-1.9.1/jquery.tocify.css" rel="stylesheet" />
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<script src="site_libs/tocify-1.9.1/jquery.tocify.js"></script>
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<script src="site_libs/navigation-1.1/tabsets.js"></script>
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<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
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<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
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<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
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<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />
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<link rel='shortcut icon' type='image/x-icon' href='favicon.ico' />
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<style type="text/css">
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code{white-space: pre-wrap;}
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span.smallcaps{font-variant: small-caps;}
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span.underline{text-decoration: underline;}
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div.column{display: inline-block; vertical-align: top; width: 50%;}
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div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
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ul.task-list{list-style: none;}
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</style>
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<style type="text/css">code{white-space: pre;}</style>
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<style type="text/css">
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pre:not([class]) {
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background-color: white;
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}
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</style>
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<script type="text/javascript">
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if (window.hljs) {
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hljs.configure({languages: []});
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hljs.initHighlightingOnLoad();
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if (document.readyState && document.readyState === "complete") {
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window.setTimeout(function() { hljs.initHighlighting(); }, 0);
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}
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}
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</script>
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<style type="text/css">
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h1 {
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font-size: 34px;
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}
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h1.title {
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font-size: 38px;
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}
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h2 {
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font-size: 30px;
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}
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h3 {
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font-size: 24px;
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}
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h4 {
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font-size: 18px;
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}
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h5 {
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font-size: 16px;
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}
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h6 {
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font-size: 12px;
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}
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.table th:not([align]) {
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text-align: left;
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}
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</style>
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<link rel="stylesheet" href="style.css" type="text/css" />
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<style type = "text/css">
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.main-container {
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max-width: 940px;
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margin-left: auto;
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margin-right: auto;
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}
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code {
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color: inherit;
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background-color: rgba(0, 0, 0, 0.04);
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}
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img {
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max-width:100%;
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}
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.tabbed-pane {
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padding-top: 12px;
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}
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.html-widget {
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margin-bottom: 20px;
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}
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button.code-folding-btn:focus {
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outline: none;
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}
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summary {
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display: list-item;
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}
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</style>
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<style type="text/css">
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/* padding for bootstrap navbar */
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body {
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padding-top: 51px;
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padding-bottom: 40px;
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}
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/* offset scroll position for anchor links (for fixed navbar) */
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.section h1 {
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padding-top: 56px;
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margin-top: -56px;
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}
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.section h2 {
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padding-top: 56px;
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margin-top: -56px;
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}
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.section h3 {
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padding-top: 56px;
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margin-top: -56px;
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}
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.section h4 {
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padding-top: 56px;
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margin-top: -56px;
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}
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.section h5 {
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padding-top: 56px;
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margin-top: -56px;
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}
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.section h6 {
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padding-top: 56px;
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margin-top: -56px;
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}
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.dropdown-submenu {
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position: relative;
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}
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.dropdown-submenu>.dropdown-menu {
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top: 0;
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left: 100%;
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margin-top: -6px;
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margin-left: -1px;
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border-radius: 0 6px 6px 6px;
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}
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.dropdown-submenu:hover>.dropdown-menu {
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display: block;
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}
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.dropdown-submenu>a:after {
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display: block;
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content: " ";
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float: right;
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width: 0;
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height: 0;
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border-color: transparent;
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border-style: solid;
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border-width: 5px 0 5px 5px;
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border-left-color: #cccccc;
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margin-top: 5px;
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margin-right: -10px;
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}
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.dropdown-submenu:hover>a:after {
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border-left-color: #ffffff;
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}
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.dropdown-submenu.pull-left {
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float: none;
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}
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.dropdown-submenu.pull-left>.dropdown-menu {
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left: -100%;
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margin-left: 10px;
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border-radius: 6px 0 6px 6px;
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}
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</style>
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<script>
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// manage active state of menu based on current page
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$(document).ready(function () {
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// active menu anchor
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href = window.location.pathname
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href = href.substr(href.lastIndexOf('/') + 1)
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if (href === "")
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href = "index.html";
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var menuAnchor = $('a[href="' + href + '"]');
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// mark it active
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menuAnchor.parent().addClass('active');
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// if it's got a parent navbar menu mark it active as well
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menuAnchor.closest('li.dropdown').addClass('active');
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});
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</script>
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<!-- tabsets -->
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<style type="text/css">
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.tabset-dropdown > .nav-tabs {
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display: inline-table;
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max-height: 500px;
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min-height: 44px;
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overflow-y: auto;
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background: white;
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border: 1px solid #ddd;
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border-radius: 4px;
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}
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.tabset-dropdown > .nav-tabs > li.active:before {
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content: "";
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font-family: 'Glyphicons Halflings';
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display: inline-block;
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padding: 10px;
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border-right: 1px solid #ddd;
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}
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.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
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content: "";
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border: none;
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}
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.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
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content: "";
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font-family: 'Glyphicons Halflings';
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display: inline-block;
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padding: 10px;
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border-right: 1px solid #ddd;
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}
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.tabset-dropdown > .nav-tabs > li.active {
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display: block;
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}
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.tabset-dropdown > .nav-tabs > li > a,
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.tabset-dropdown > .nav-tabs > li > a:focus,
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.tabset-dropdown > .nav-tabs > li > a:hover {
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border: none;
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display: inline-block;
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border-radius: 4px;
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background-color: transparent;
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}
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.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
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display: block;
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float: none;
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}
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.tabset-dropdown > .nav-tabs > li {
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display: none;
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}
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</style>
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<!-- code folding -->
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<style type="text/css">
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#TOC {
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margin: 25px 0px 20px 0px;
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}
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@media (max-width: 768px) {
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#TOC {
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position: relative;
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width: 100%;
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}
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}
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@media print {
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.toc-content {
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/* see https://github.com/w3c/csswg-drafts/issues/4434 */
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float: right;
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}
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}
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.toc-content {
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padding-left: 30px;
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padding-right: 40px;
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}
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div.main-container {
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max-width: 1200px;
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}
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div.tocify {
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width: 20%;
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max-width: 260px;
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max-height: 85%;
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}
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@media (min-width: 768px) and (max-width: 991px) {
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div.tocify {
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width: 25%;
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}
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}
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@media (max-width: 767px) {
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div.tocify {
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width: 100%;
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max-width: none;
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}
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}
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.tocify ul, .tocify li {
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line-height: 20px;
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}
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.tocify-subheader .tocify-item {
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font-size: 0.90em;
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}
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.tocify .list-group-item {
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border-radius: 0px;
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}
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</style>
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</head>
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<body>
|
||
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<div class="container-fluid main-container">
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<!-- setup 3col/9col grid for toc_float and main content -->
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<div class="row-fluid">
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||
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<div class="col-xs-12 col-sm-4 col-md-3">
|
||
|
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<div id="TOC" class="tocify">
|
||
|
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</div>
|
||
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</div>
|
||
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|
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<div class="toc-content col-xs-12 col-sm-8 col-md-9">
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<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||
|
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<div class="container">
|
||
|
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<div class="navbar-header">
|
||
|
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<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
|
||
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<span class="icon-bar"></span>
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<span class="icon-bar"></span>
|
||
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<span class="icon-bar"></span>
|
||
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</button>
|
||
|
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<a class="navbar-brand" href="index.html"><div><img src="ohdsi16x16.png"></img> OMOP Common Data Model </div></a>
|
||
|
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</div>
|
||
|
|
<div id="navbar" class="navbar-collapse collapse">
|
||
|
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<ul class="nav navbar-nav">
|
||
|
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<li>
|
||
|
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<a href="index.html">
|
||
|
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<span class="fas fa-home"></span>
|
||
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|
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|
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</a>
|
||
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</li>
|
||
|
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<li class="dropdown">
|
||
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||
|
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<span class="fas fa-landmark"></span>
|
||
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|
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Background
|
||
|
|
|
||
|
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<span class="caret"></span>
|
||
|
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</a>
|
||
|
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<ul class="dropdown-menu" role="menu">
|
||
|
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<li>
|
||
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<a href="background.html">Model Background</a>
|
||
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</li>
|
||
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<li>
|
||
|
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<a href="cdmRefreshProcess.html">CDM Refresh Process</a>
|
||
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</li>
|
||
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<li>
|
||
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<a href="vocabulary.html">How the Vocabulary is Built</a>
|
||
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</li>
|
||
|
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</ul>
|
||
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</li>
|
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<li class="dropdown">
|
||
|
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||
|
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<span class="fas fa-list-alt"></span>
|
||
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|
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|
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Conventions
|
||
|
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|
||
|
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<span class="caret"></span>
|
||
|
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</a>
|
||
|
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<ul class="dropdown-menu" role="menu">
|
||
|
|
<li>
|
||
|
|
<a href="dataModelConventions.html">General Conventions</a>
|
||
|
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</li>
|
||
|
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<li>
|
||
|
|
<a href="ehrObsPeriods.html">Observation Periods for EHR Data</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="cdmPrivacy.html">Patient Privacy and OMOP</a>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</li>
|
||
|
|
<li class="dropdown">
|
||
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||
|
|
<span class="fas fa-history"></span>
|
||
|
|
|
||
|
|
CDM Versions
|
||
|
|
|
||
|
|
<span class="caret"></span>
|
||
|
|
</a>
|
||
|
|
<ul class="dropdown-menu" role="menu">
|
||
|
|
<li>
|
||
|
|
<a href="cdm30.html">CDM v3.0</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="cdm60.html">CDM v6.0</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="cdm53.html">CDM v5.3</a>
|
||
|
|
</li>
|
||
|
|
<li class="dropdown-submenu">
|
||
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||
|
|
<ul class="dropdown-menu" role="menu">
|
||
|
|
<li>
|
||
|
|
<a href="cdm54.html">CDM v5.4</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="cdm54Changes.html">Changes from CDM v5.3</a>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</li>
|
||
|
|
<li class="dropdown">
|
||
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||
|
|
<span class="fas fa-plus-square"></span>
|
||
|
|
|
||
|
|
Proposals
|
||
|
|
|
||
|
|
<span class="caret"></span>
|
||
|
|
</a>
|
||
|
|
<ul class="dropdown-menu" role="menu">
|
||
|
|
<li>
|
||
|
|
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||
|
|
</li>
|
||
|
|
<li class="dropdown-submenu">
|
||
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||
|
|
<ul class="dropdown-menu" role="menu">
|
||
|
|
<li>
|
||
|
|
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</li>
|
||
|
|
<li class="dropdown">
|
||
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||
|
|
<span class="fas fa-question"></span>
|
||
|
|
|
||
|
|
How to
|
||
|
|
|
||
|
|
<span class="caret"></span>
|
||
|
|
</a>
|
||
|
|
<ul class="dropdown-menu" role="menu">
|
||
|
|
<li>
|
||
|
|
<a href="download.html">Download the DDL</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="cdmRPackage.html">Use the CDM R Package</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="drug_dose.html">Calculate Drug Dose</a>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</li>
|
||
|
|
<li class="dropdown">
|
||
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||
|
|
<span class="fas fa-life-ring"></span>
|
||
|
|
|
||
|
|
Support
|
||
|
|
|
||
|
|
<span class="caret"></span>
|
||
|
|
</a>
|
||
|
|
<ul class="dropdown-menu" role="menu">
|
||
|
|
<li>
|
||
|
|
<a href="faq.html">FAQ</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="sqlScripts.html">SQL Scripts</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="contribute.html">Ask a Question</a>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
<ul class="nav navbar-nav navbar-right">
|
||
|
|
<li>
|
||
|
|
<a href="https://github.com/OHDSI/CommonDataModel">
|
||
|
|
<span class="fas fa-github"></span>
|
||
|
|
|
||
|
|
</a>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</div><!--/.nav-collapse -->
|
||
|
|
</div><!--/.container -->
|
||
|
|
</div><!--/.navbar -->
|
||
|
|
|
||
|
|
<div class="fluid-row" id="header">
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
</div>
|
||
|
|
|
||
|
|
|
||
|
|
<div id="changes-by-table" class="section level1">
|
||
|
|
<h1><strong>Changes by Table</strong></h1>
|
||
|
|
<p><em>from CDM v5.3 -> CDM v5.4</em></p>
|
||
|
|
<p>For a full description of each table and field listed here, please see the <a href="http://ohdsi.github.io/CommonDataModel/cdm54.html">CDM specification</a>.</p>
|
||
|
|
<p>Notation:</p>
|
||
|
|
<ul>
|
||
|
|
<li>a <strong>+</strong> indicates an addition to the model, either a table or field</li>
|
||
|
|
<li>a <strong>-></strong> indicates an alteration either in naming or specification</li>
|
||
|
|
<li>a <strong>-</strong> indicates a subtraction from the model, either a table or field</li>
|
||
|
|
</ul>
|
||
|
|
<div id="person" class="section level2">
|
||
|
|
<h2>PERSON</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="observation_period" class="section level2">
|
||
|
|
<h2>OBSERVATION_PERIOD</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="visit_occurrence" class="section level2">
|
||
|
|
<h2>VISIT_OCCURRENCE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>Admitting_source_concept_id -> <strong>Admitted_from_concept_id</strong></li>
|
||
|
|
<li>Admitting_source_value -> <strong>Admitted_from_source_value</strong></li>
|
||
|
|
<li>Discharge_to_concept_id -> <strong>Discharged_to_concept_id</strong></li>
|
||
|
|
<li>Discharge_to_source_value -> <strong>Discharged_to_concept_id</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="visit_detail" class="section level2">
|
||
|
|
<h2>VISIT_DETAIL</h2>
|
||
|
|
<ul>
|
||
|
|
<li>Admitting_source_concept_id -> <strong>Admitted_from_concept_id</strong></li>
|
||
|
|
<li>Admitting_source_value -> <strong>Admitted_from_source_value</strong></li>
|
||
|
|
<li>Discharge_to_concept_id -> <strong>Discharged_to_concept_id</strong></li>
|
||
|
|
<li>Discharge_to_source_value -> <strong>Discharged_to_concept_id</strong></li>
|
||
|
|
<li>Visit_detail_parent_id -> <strong>Parent_visit_detail_id</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="condition_occurrence" class="section level2">
|
||
|
|
<h2>CONDITION_OCCURRENCE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="drug_exposure" class="section level2">
|
||
|
|
<h2>DRUG_EXPOSURE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="procedure_occurrence" class="section level2">
|
||
|
|
<h2>PROCEDURE_OCCURRENCE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>+ <strong>Procedure_end_date</strong></li>
|
||
|
|
<li>+ <strong>Procedure_end_datetime</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="device_exposure" class="section level2">
|
||
|
|
<h2>DEVICE_EXPOSURE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>Unique_device_id -> <strong>Changed to varchar(255)</strong></li>
|
||
|
|
<li>+ <strong>Production_id</strong></li>
|
||
|
|
<li>+ <strong>Unit_concept_id</strong></li>
|
||
|
|
<li>+ <strong>Unit_source_value</strong></li>
|
||
|
|
<li>+ <strong>Unit_source_concept_id</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="measurement" class="section level2">
|
||
|
|
<h2>MEASUREMENT</h2>
|
||
|
|
<ul>
|
||
|
|
<li>+ <strong>Unit_source_concept_id</strong></li>
|
||
|
|
<li>+ <strong>Measurement_event_id</strong></li>
|
||
|
|
<li>+ <strong>Meas_event_field_concept_id</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="observation" class="section level2">
|
||
|
|
<h2>OBSERVATION</h2>
|
||
|
|
<ul>
|
||
|
|
<li>+ <strong>Value_source_value</strong></li>
|
||
|
|
<li>+ <strong>Observation_event_id</strong></li>
|
||
|
|
<li>+ <strong>Obs_event_field_concept_id</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="death" class="section level2">
|
||
|
|
<h2>DEATH</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="note" class="section level2">
|
||
|
|
<h2>NOTE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>+ <strong>Note_event_id</strong></li>
|
||
|
|
<li>+ <strong>Note_event_field_concept_id</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="note_nlp" class="section level2">
|
||
|
|
<h2>NOTE_NLP</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="specimen" class="section level2">
|
||
|
|
<h2>SPECIMEN</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="fact_relationship" class="section level2">
|
||
|
|
<h2>FACT_RELATIONSHIP</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="location" class="section level2">
|
||
|
|
<h2>LOCATION</h2>
|
||
|
|
<ul>
|
||
|
|
<li>+ <strong>Country_concept_id</strong></li>
|
||
|
|
<li>+ <strong>Country_source_value</strong></li>
|
||
|
|
<li>+ <strong>Latitude</strong></li>
|
||
|
|
<li>+ <strong>Longitude</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="care_site" class="section level2">
|
||
|
|
<h2>CARE_SITE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="payer_plan_period" class="section level2">
|
||
|
|
<h2>PAYER_PLAN_PERIOD</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="cost" class="section level2">
|
||
|
|
<h2>COST</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="drug_era" class="section level2">
|
||
|
|
<h2>DRUG_ERA</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="dose_era" class="section level2">
|
||
|
|
<h2>DOSE_ERA</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="condition_era" class="section level2">
|
||
|
|
<h2>CONDITION_ERA</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="episode" class="section level2">
|
||
|
|
<h2>+ <strong>EPISODE</strong></h2>
|
||
|
|
<table>
|
||
|
|
<thead>
|
||
|
|
<tr class="header">
|
||
|
|
<th>EPISODE</th>
|
||
|
|
</tr>
|
||
|
|
</thead>
|
||
|
|
<tbody>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>person_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_concept_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>episode_start_date</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_start_datetime</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>episode_end_date</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_end_datetime</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>episode_parent_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_number</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>episode_object_concept_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_type_concept_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>episode_source_value</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_source_concept_id</td>
|
||
|
|
</tr>
|
||
|
|
</tbody>
|
||
|
|
</table>
|
||
|
|
</div>
|
||
|
|
<div id="episode_event" class="section level2">
|
||
|
|
<h2>+ <strong>EPISODE_EVENT</strong></h2>
|
||
|
|
<table>
|
||
|
|
<thead>
|
||
|
|
<tr class="header">
|
||
|
|
<th>EPISODE_EVENT</th>
|
||
|
|
</tr>
|
||
|
|
</thead>
|
||
|
|
<tbody>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>event_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_event_field_concept_id</td>
|
||
|
|
</tr>
|
||
|
|
</tbody>
|
||
|
|
</table>
|
||
|
|
</div>
|
||
|
|
<div id="metadata" class="section level2">
|
||
|
|
<h2>METADATA</h2>
|
||
|
|
<ul>
|
||
|
|
<li>+ <strong>Metadata_id</strong></li>
|
||
|
|
<li>+ <strong>Value_as_number</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="cdm_source" class="section level2">
|
||
|
|
<h2>CDM_SOURCE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>Cdm_source_name -> <strong>Mandatory field</strong></li>
|
||
|
|
<li>Cdm_source_abbreviation -> <strong>Mandatory field</strong></li>
|
||
|
|
<li>Cdm_holder -> <strong>Mandatory field</strong></li>
|
||
|
|
<li>Source_release_date -> <strong>Mandatory field</strong></li>
|
||
|
|
<li>Cdm_release_date -> <strong>Mandatory field</strong></li>
|
||
|
|
<li>+ <strong>Cdm_version_concept_id</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="concept" class="section level2">
|
||
|
|
<h2>CONCEPT</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="vocabulary" class="section level2">
|
||
|
|
<h2>VOCABULARY</h2>
|
||
|
|
<ul>
|
||
|
|
<li>Vocabulary_reference -> <strong>Non-mandatory field</strong></li>
|
||
|
|
<li>Vocabulary_version -> <strong>Non-mandatory field</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="domain" class="section level2">
|
||
|
|
<h2>DOMAIN</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="concept_class" class="section level2">
|
||
|
|
<h2>CONCEPT_CLASS</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="concept_relationship" class="section level2">
|
||
|
|
<h2>CONCEPT_RELATIONSHIP</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="relationship" class="section level2">
|
||
|
|
<h2>RELATIONSHIP</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="concept_synonym" class="section level2">
|
||
|
|
<h2>CONCEPT_SYNONYM</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="concept_ancestor" class="section level2">
|
||
|
|
<h2>CONCEPT_ANCESTOR</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="source_to_concept_map" class="section level2">
|
||
|
|
<h2>SOURCE_TO_CONCEPT_MAP</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="drug_strength" class="section level2">
|
||
|
|
<h2>DRUG_STRENGTH</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="attribute_definition" class="section level2">
|
||
|
|
<h2>- <strong>ATTRIBUTE_DEFINITION</strong></h2>
|
||
|
|
</div>
|
||
|
|
<div id="cohort" class="section level2">
|
||
|
|
<h2>+ <strong>COHORT</strong></h2>
|
||
|
|
<table>
|
||
|
|
<thead>
|
||
|
|
<tr class="header">
|
||
|
|
<th>COHORT</th>
|
||
|
|
</tr>
|
||
|
|
</thead>
|
||
|
|
<tbody>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>cohort_definition_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>subject_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>cohort_start_date</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>cohort_end_date</td>
|
||
|
|
</tr>
|
||
|
|
</tbody>
|
||
|
|
</table>
|
||
|
|
</div>
|
||
|
|
</div>
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
</div>
|
||
|
|
</div>
|
||
|
|
|
||
|
|
</div>
|
||
|
|
|
||
|
|
<script>
|
||
|
|
|
||
|
|
// add bootstrap table styles to pandoc tables
|
||
|
|
function bootstrapStylePandocTables() {
|
||
|
|
$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
|
||
|
|
}
|
||
|
|
$(document).ready(function () {
|
||
|
|
bootstrapStylePandocTables();
|
||
|
|
});
|
||
|
|
|
||
|
|
|
||
|
|
</script>
|
||
|
|
|
||
|
|
<!-- tabsets -->
|
||
|
|
|
||
|
|
<script>
|
||
|
|
$(document).ready(function () {
|
||
|
|
window.buildTabsets("TOC");
|
||
|
|
});
|
||
|
|
|
||
|
|
$(document).ready(function () {
|
||
|
|
$('.tabset-dropdown > .nav-tabs > li').click(function () {
|
||
|
|
$(this).parent().toggleClass('nav-tabs-open')
|
||
|
|
});
|
||
|
|
});
|
||
|
|
</script>
|
||
|
|
|
||
|
|
<!-- code folding -->
|
||
|
|
|
||
|
|
<script>
|
||
|
|
$(document).ready(function () {
|
||
|
|
|
||
|
|
// move toc-ignore selectors from section div to header
|
||
|
|
$('div.section.toc-ignore')
|
||
|
|
.removeClass('toc-ignore')
|
||
|
|
.children('h1,h2,h3,h4,h5').addClass('toc-ignore');
|
||
|
|
|
||
|
|
// establish options
|
||
|
|
var options = {
|
||
|
|
selectors: "h1,h2,h3",
|
||
|
|
theme: "bootstrap3",
|
||
|
|
context: '.toc-content',
|
||
|
|
hashGenerator: function (text) {
|
||
|
|
return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_');
|
||
|
|
},
|
||
|
|
ignoreSelector: ".toc-ignore",
|
||
|
|
scrollTo: 0
|
||
|
|
};
|
||
|
|
options.showAndHide = true;
|
||
|
|
options.smoothScroll = true;
|
||
|
|
|
||
|
|
// tocify
|
||
|
|
var toc = $("#TOC").tocify(options).data("toc-tocify");
|
||
|
|
});
|
||
|
|
</script>
|
||
|
|
|
||
|
|
<!-- dynamically load mathjax for compatibility with self-contained -->
|
||
|
|
<script>
|
||
|
|
(function () {
|
||
|
|
var script = document.createElement("script");
|
||
|
|
script.type = "text/javascript";
|
||
|
|
script.src = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
|
||
|
|
document.getElementsByTagName("head")[0].appendChild(script);
|
||
|
|
})();
|
||
|
|
</script>
|
||
|
|
|
||
|
|
</body>
|
||
|
|
</html>
|