OMOP/Redshift/OMOP CDM redshift ddl.txt

/*********************************************************************************
# Copyright 2018-08 Observational Health Data Sciences and Informatics
#
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
********************************************************************************/

/************************

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redshift script to create OMOP common data model version 6.0

last revised: 27-Aug-2018

Authors:  Patrick Ryan, Christian Reich, Clair Blacketer


*************************/


/************************

Standardized vocabulary

************************/


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE concept  (concept_id			    INTEGER			  NOT NULL ,
  concept_name			  VARCHAR(255)	NOT NULL ,
  domain_id				    VARCHAR(20)		NOT NULL ,
  vocabulary_id			  VARCHAR(20)		NOT NULL ,
  concept_class_id		VARCHAR(20)		NOT NULL ,
  standard_concept		VARCHAR(1)		NULL ,
  concept_code			  VARCHAR(50)		NOT NULL ,
  valid_start_date		DATE			    NOT NULL ,
  valid_end_date		  DATE			    NOT NULL ,
  invalid_reason		  VARCHAR(1)		NULL
)
DISTSTYLE ALL;


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE vocabulary  (vocabulary_id			    VARCHAR(20)		NOT NULL,
  vocabulary_name		    VARCHAR(255)	NOT NULL,
  vocabulary_reference	VARCHAR(255)	NOT NULL,
  vocabulary_version	  VARCHAR(255)	NOT NULL,
  vocabulary_concept_id	INTEGER			  NOT NULL
)
DISTSTYLE ALL;


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE domain  (domain_id			    VARCHAR(20)		NOT NULL,
  domain_name		    VARCHAR(255)	NOT NULL,
  domain_concept_id	INTEGER			  NOT NULL
)
DISTSTYLE ALL;


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE concept_class  (concept_class_id			    VARCHAR(20)		NOT NULL,
  concept_class_name		    VARCHAR(255)	NOT NULL,
  concept_class_concept_id	INTEGER			  NOT NULL
)
DISTSTYLE ALL;


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE concept_relationship  (concept_id_1			INTEGER			NOT NULL,
  concept_id_2			INTEGER			NOT NULL,
  relationship_id		VARCHAR(20)	NOT NULL,
  valid_start_date	DATE			  NOT NULL,
  valid_end_date		DATE			  NOT NULL,
  invalid_reason		VARCHAR(1)	NULL
  )
DISTSTYLE ALL;


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE relationship  (relationship_id			    VARCHAR(20)		NOT NULL,
  relationship_name			  VARCHAR(255)	NOT NULL,
  is_hierarchical			    VARCHAR(1)		NOT NULL,
  defines_ancestry			  VARCHAR(1)		NOT NULL,
  reverse_relationship_id	VARCHAR(20)		NOT NULL,
  relationship_concept_id	INTEGER			  NOT NULL
)
DISTSTYLE ALL;


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE concept_synonym  (concept_id			      INTEGER			  NOT NULL,
  concept_synonym_name	VARCHAR(1000)	NOT NULL,
  language_concept_id	  INTEGER			  NOT NULL
)
DISTSTYLE ALL;


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE concept_ancestor  (ancestor_concept_id		    INTEGER		NOT NULL,
  descendant_concept_id		  INTEGER		NOT NULL,
  min_levels_of_separation	INTEGER		NOT NULL,
  max_levels_of_separation	INTEGER		NOT NULL
)
DISTSTYLE ALL;


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE source_to_concept_map  (source_code				      VARCHAR(50)		NOT NULL,
  source_concept_id			  INTEGER			  NOT NULL,
  source_vocabulary_id		VARCHAR(20)		NOT NULL,
  source_code_description	VARCHAR(255)	NULL,
  target_concept_id			  INTEGER			  NOT NULL,
  target_vocabulary_id		VARCHAR(20)		NOT NULL,
  valid_start_date			  DATE			    NOT NULL,
  valid_end_date			    DATE			    NOT NULL,
  invalid_reason			    VARCHAR(1)		NULL
)
DISTSTYLE ALL;


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE drug_strength  (drug_concept_id				      INTEGER		  NOT NULL,
  ingredient_concept_id			  INTEGER		  NOT NULL,
  amount_value					      FLOAT		    NULL,
  amount_unit_concept_id		  INTEGER		  NULL,
  numerator_value				      FLOAT		    NULL,
  numerator_unit_concept_id		INTEGER		  NULL,
  denominator_value				    FLOAT		    NULL,
  denominator_unit_concept_id	INTEGER		  NULL,
  box_size						        INTEGER		  NULL,
  valid_start_date				    DATE		    NOT NULL,
  valid_end_date				      DATE		    NOT NULL,
  invalid_reason				      VARCHAR(1)  NULL
)
DISTSTYLE ALL;


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE cohort_definition  (cohort_definition_id				    INTEGER			  NOT NULL,
  cohort_definition_name			    VARCHAR(255)	NOT NULL,
  cohort_definition_description		VARCHAR(MAX)	NULL,
  definition_type_concept_id		  INTEGER			  NOT NULL,
  cohort_definition_syntax			  VARCHAR(MAX)	NULL,
  subject_concept_id				      INTEGER			  NOT NULL,
  cohort_initiation_date			    DATE			    NULL
)
DISTSTYLE ALL;


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE attribute_definition  (attribute_definition_id		  INTEGER			  NOT NULL,
  attribute_name				      VARCHAR(255)	NOT NULL,
  attribute_description			  VARCHAR(MAX)	NULL,
  attribute_type_concept_id		INTEGER			  NOT NULL,
  attribute_syntax				    VARCHAR(MAX)	NULL
)
DISTSTYLE ALL;


/**************************

Standardized meta-data

***************************/


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE cdm_source
 (cdm_source_name					        VARCHAR(255)	NOT NULL ,
  cdm_source_abbreviation			    VARCHAR(25)		NULL ,
  cdm_holder							        VARCHAR(255)	NULL ,
  source_description					    VARCHAR(MAX)	NULL ,
  source_documentation_reference	VARCHAR(255)	NULL ,
  cdm_etl_reference					      VARCHAR(255)	NULL ,
  source_release_date				      DATE			    NULL ,
  cdm_release_date					      DATE			    NULL ,
  cdm_version						          VARCHAR(10)		NULL ,
  vocabulary_version					    VARCHAR(20)		NULL
)
DISTSTYLE ALL;


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE metadata
 (metadata_concept_id       INTEGER       NOT NULL ,
  metadata_type_concept_id  INTEGER       NOT NULL ,
  name                      VARCHAR(250)  NOT NULL ,
  value_as_string           VARCHAR(MAX)  NULL ,
  value_as_concept_id       INTEGER       NULL ,
  metadata_date             DATE          NULL ,
  metadata_datetime         TIMESTAMP      NULL
)
DISTSTYLE ALL;

INSERT INTO metadata (name, value_as_string) --Added cdm version record
VALUES ('CDM Version', '6.0')
;


/************************

Standardized clinical data

************************/


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE person
 (person_id						        BIGINT	  	NOT NULL , --BIGINTs added
  gender_concept_id				    INTEGER	  	NOT NULL ,
  year_of_birth					      INTEGER	  	NOT NULL ,
  month_of_birth				      INTEGER	  	NULL,
  day_of_birth					      INTEGER	  	NULL,
  birth_datetime				      TIMESTAMP	  NULL,
  race_concept_id				      INTEGER		  NOT NULL,
  ethnicity_concept_id			  INTEGER	  	NOT NULL,
  location_id					        INTEGER		  NULL,
  provider_id					        INTEGER		  NULL,
  care_site_id					      INTEGER		  NULL,
  person_source_value			    VARCHAR(50) NULL,
  gender_source_value			    VARCHAR(50) NULL,
  gender_source_concept_id	  INTEGER		  NULL,
  race_source_value				    VARCHAR(50) NULL,
  race_source_concept_id		  INTEGER		  NULL,
  ethnicity_source_value		  VARCHAR(50) NULL,
  ethnicity_source_concept_id	INTEGER		  NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE observation_period
 (observation_period_id				      BIGINT		NOT NULL ,
  person_id							      BIGINT		NOT NULL ,
  observation_period_start_date		  DATE		  NOT NULL ,
  observation_period_end_date		    DATE		  NOT NULL ,
  period_type_concept_id			      INTEGER		NOT NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE specimen
 (specimen_id						      BIGINT			NOT NULL ,
  person_id							      BIGINT			NOT NULL ,
  specimen_concept_id				  INTEGER			NOT NULL ,
  specimen_type_concept_id		INTEGER			NOT NULL ,
  specimen_date						    DATE			  NULL ,
  specimen_datetime					  TIMESTAMP		NOT NULL ,
  quantity							      FLOAT			  NULL ,
  unit_concept_id					    INTEGER			NULL ,
  anatomic_site_concept_id		INTEGER			NULL ,
  disease_status_concept_id		INTEGER			NULL ,
  specimen_source_id				  VARCHAR(50)	NULL ,
  specimen_source_value				VARCHAR(50)	NULL ,
  unit_source_value					  VARCHAR(50)	NULL ,
  anatomic_site_source_value	VARCHAR(50)	NULL ,
  disease_status_source_value VARCHAR(50)	NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE death
 (person_id							  BIGINT			NOT NULL ,
  death_date							DATE			  NULL ,
  death_datetime					TIMESTAMP		NOT NULL ,
  death_type_concept_id   INTEGER			NOT NULL ,
  cause_concept_id			  INTEGER			NULL ,
  cause_source_value			VARCHAR(50)	NULL,
  cause_source_concept_id INTEGER			NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE visit_occurrence
 (visit_occurrence_id			      BIGINT			NOT NULL ,
  person_id						          BIGINT			NOT NULL ,
  visit_concept_id				      INTEGER			NOT NULL ,
  visit_start_date				      DATE			  NULL ,
  visit_start_datetime				  TIMESTAMP		NOT NULL ,
  visit_end_date					      DATE			  NULL ,
  visit_end_datetime					  TIMESTAMP		NOT NULL ,
  visit_type_concept_id			    INTEGER			NOT NULL ,
  provider_id					          INTEGER			NULL,
  care_site_id					        INTEGER			NULL,
  visit_source_value				    VARCHAR(50)	NULL,
  visit_source_concept_id		    INTEGER			NULL ,
  admitted_from_concept_id      INTEGER     NULL ,   /*Changed from admitting_source_* */
  admitted_from_source_value    VARCHAR(50) NULL ,
  discharge_to_source_value		  VARCHAR(50)	NULL ,
  discharge_to_concept_id		    INTEGER   	NULL ,
  preceding_visit_occurrence_id	INTEGER			NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE visit_detail
 (visit_detail_id                    BIGINT      NOT NULL ,
  person_id                          BIGINT      NOT NULL ,
  visit_detail_concept_id            INTEGER     NOT NULL ,
  visit_detail_start_date            DATE        NULL ,
  visit_detail_start_datetime        TIMESTAMP   NOT NULL ,
  visit_detail_end_date              DATE        NULL ,
  visit_detail_end_datetime          TIMESTAMP   NOT NULL ,
  visit_detail_type_concept_id       INTEGER     NOT NULL ,
  provider_id                        INTEGER     NULL ,
  care_site_id                       INTEGER     NULL ,
  discharge_to_concept_id            INTEGER     NULL ,
  admitted_from_concept_id           INTEGER     NULL , /*Changed from admitting_source_* */
  admitted_from_source_value         VARCHAR(50) NULL ,
  visit_detail_source_value          VARCHAR(50) NULL ,
  visit_detail_source_concept_id     INTEGER     NULL ,
  discharge_to_source_value          VARCHAR(50) NULL ,
  preceding_visit_detail_id          BIGINT      NULL ,
  visit_detail_parent_id             BIGINT      NULL ,
  visit_occurrence_id                BIGINT      NOT NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE procedure_occurrence
 (procedure_occurrence_id		  BIGINT			NOT NULL ,
  person_id						        BIGINT			NOT NULL ,
  procedure_concept_id			  INTEGER			NOT NULL ,
  procedure_date				      DATE			  NULL ,
  procedure_datetime			    TIMESTAMP		NOT NULL ,
  procedure_type_concept_id		INTEGER			NOT NULL ,
  modifier_concept_id			    INTEGER			NULL ,
  quantity						        INTEGER			NULL ,
  provider_id					        INTEGER			NULL ,
  visit_occurrence_id			    INTEGER			NULL ,
  visit_detail_id             INTEGER     NULL ,
  procedure_source_value		  VARCHAR(50)	NULL ,
  procedure_source_concept_id	INTEGER			NULL ,
  modifier_source_value		    VARCHAR(50)	NULL ,
)
DISTKEY(person_id);


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE drug_exposure
 (drug_exposure_id				      BIGINT			  NOT NULL ,
  person_id						          BIGINT			  NOT NULL ,
  drug_concept_id				        INTEGER			  NOT NULL ,
  drug_exposure_start_date		  DATE			    NULL ,
  drug_exposure_start_datetime  TIMESTAMP		  NOT NULL ,
  drug_exposure_end_date		    DATE			    NULL ,
  drug_exposure_end_datetime	  TIMESTAMP		  NOT NULL ,
  verbatim_end_date				      DATE			    NULL ,
  drug_type_concept_id			    INTEGER			  NOT NULL ,
  stop_reason					          VARCHAR(20)		NULL ,
  refills						            INTEGER		  	NULL ,
  quantity						          FLOAT			    NULL ,
  days_supply					          INTEGER		  	NULL ,
  sig							              VARCHAR(MAX)	NULL ,
  route_concept_id				      INTEGER			  NULL ,
  lot_number					          VARCHAR(50)	  NULL ,
  provider_id					          INTEGER			  NULL ,
  visit_occurrence_id			      INTEGER			  NULL ,
  visit_detail_id               INTEGER       NULL ,
  drug_source_value				      VARCHAR(50)	  NULL ,
  drug_source_concept_id		    INTEGER			  NULL ,
  route_source_value			      VARCHAR(50)	  NULL ,
  dose_unit_source_value		    VARCHAR(50)	  NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE device_exposure
 (device_exposure_id			        BIGINT		  	NOT NULL ,
  person_id						            BIGINT			  NOT NULL ,
  device_concept_id			        	INTEGER			  NOT NULL ,
  device_exposure_start_date	    DATE			    NULL ,
  device_exposure_start_datetime  TIMESTAMP		  NOT NULL ,
  device_exposure_end_date		    DATE			    NULL ,
  device_exposure_end_datetime    TIMESTAMP		  NULL ,
  device_type_concept_id		      INTEGER			  NOT NULL ,
  unique_device_id			        	VARCHAR(50)		NULL ,
  quantity						            INTEGER			  NULL ,
  provider_id					            INTEGER			  NULL ,
  visit_occurrence_id			        INTEGER			  NULL ,
  visit_detail_id                 INTEGER       NULL ,
  device_source_value			        VARCHAR(100)	NULL ,
  device_source_concept_id		    INTEGER			  NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE condition_occurrence
 (condition_occurrence_id		    BIGINT			NOT NULL ,
  person_id						          BIGINT			NOT NULL ,
  condition_concept_id			    INTEGER			NOT NULL ,
  condition_start_date			    DATE			  NULL ,
  condition_start_datetime		  TIMESTAMP		NOT NULL ,
  condition_end_date			      DATE			  NULL ,
  condition_end_datetime		    TIMESTAMP		NULL ,
  condition_type_concept_id		  INTEGER			NOT NULL ,
  condition_status_concept_id	  INTEGER			NULL ,
  stop_reason					          VARCHAR(20)	NULL ,
  provider_id					          INTEGER			NULL ,
  visit_occurrence_id			      INTEGER			NULL ,
  visit_detail_id               INTEGER     NULL ,
  condition_source_value		    VARCHAR(50)	NULL ,
  condition_source_concept_id	  INTEGER			NULL ,
  condition_status_source_value	VARCHAR(50)	NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE measurement
 (measurement_id				        BIGINT			NOT NULL ,
  person_id						          BIGINT			NOT NULL ,
  measurement_concept_id		    INTEGER			NOT NULL ,
  measurement_date				      DATE			  NULL ,
  measurement_datetime			    TIMESTAMP		NOT NULL ,
  measurement_time              VARCHAR(10) NULL,
  measurement_type_concept_id	  INTEGER			NOT NULL ,
  operator_concept_id			      INTEGER			NULL ,
  value_as_number				        FLOAT			  NULL ,
  value_as_concept_id			      INTEGER			NULL ,
  unit_concept_id				        INTEGER			NULL ,
  range_low					          	FLOAT			  NULL ,
  range_high					          FLOAT			  NULL ,
  provider_id					          INTEGER			NULL ,
  visit_occurrence_id			      INTEGER			NULL ,
  visit_detail_id               INTEGER     NULL ,
  measurement_source_value		  VARCHAR(50)	NULL ,
  measurement_source_concept_id	INTEGER			NULL ,
  unit_source_value				      VARCHAR(50)	NULL ,
  value_source_value			      VARCHAR(50)	NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE note
 (note_id						    BIGINT			  NOT NULL ,
  person_id						  BIGINT			  NOT NULL ,
  note_event_id         BIGINT        NULL , --This and the field below added
  note_domain_id        VARCHAR(20)   NULL , --This field may be removed in favor of the one below
--note_event_table_concept_id INTEGER NULL , --This may be added based on 9/4 meeting
  note_date						  DATE			    NULL ,
  note_datetime					TIMESTAMP		  NOT NULL ,
  note_type_concept_id	INTEGER			  NOT NULL ,
  note_class_concept_id INTEGER			  NOT NULL ,
  note_title					  VARCHAR(250)	NULL ,
  note_text						  VARCHAR(MAX)  NULL ,
  encoding_concept_id		INTEGER			  NOT NULL ,
  language_concept_id		INTEGER			  NOT NULL ,
  provider_id					  INTEGER			  NULL ,
  visit_occurrence_id		INTEGER			  NULL ,
  visit_detail_id       INTEGER       NULL ,
  note_source_value			VARCHAR(50)		NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE note_nlp
 (note_nlp_id					        BIGINT			  NOT NULL ,
  note_id						          BIGINT			  NOT NULL ,
  section_concept_id			    INTEGER			  NULL ,
  snippet						          VARCHAR(250)	NULL ,
  "offset"					          VARCHAR(250)	NULL ,
  lexical_variant				      VARCHAR(250)	NOT NULL ,
  note_nlp_concept_id			    INTEGER			  NULL ,
  nlp_system					        VARCHAR(250)	NULL ,
  nlp_date						        DATE			    NOT NULL ,
  nlp_datetime					      TIMESTAMP		  NULL ,
  term_exists					        VARCHAR(1)		NULL ,
  term_temporal					      VARCHAR(50)		NULL ,
  term_modifiers				      VARCHAR(2000)	NULL ,
  note_nlp_source_concept_id  INTEGER			  NULL
)
DISTSTYLE ALL;


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE observation
 (observation_id					        BIGINT			NOT NULL ,
  person_id						            BIGINT			NOT NULL ,
  observation_concept_id			    INTEGER			NOT NULL ,
  observation_date				        DATE			  NULL ,
  observation_datetime				    TIMESTAMP		NOT NULL ,
  observation_type_concept_id	    INTEGER			NOT NULL ,
  value_as_number				          FLOAT			  NULL ,
  value_as_string				          VARCHAR(60)	NULL ,
  value_as_concept_id			        INTEGER			NULL ,
  qualifier_concept_id			      INTEGER			NULL ,
  unit_concept_id				          INTEGER			NULL ,
  provider_id					            INTEGER			NULL ,
  visit_occurrence_id			        BIGINT			NULL ,
  visit_detail_id               	BIGINT      NULL ,
  observation_source_value		  	VARCHAR(50)	NULL ,
  observation_source_concept_id		INTEGER			NULL ,
  unit_source_value				        VARCHAR(50)	NULL ,
  qualifier_source_value			    VARCHAR(50)	NULL ,
  observation_event_id				    BIGINT		NULL , /* This will link back to the event table (SURVEY) on SURVEY_OCCURRENCE_ID, changed name to comply with COST and NOTE*/
  observation_event_domain_id			VARCHAR(20)	NULL ,
--obs_event_table_concept_id			INTEGER	NULL , /* Changed name to comply with COST and NOTE. Had to use 'obs' for oracle restriction, may be added on 9/4*/
  value_as_datetime					      TIMESTAMP		NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE ON KEY(person_id)
CREATE TABLE survey_conduct --Table added
 (survey_conduct_id					  BIGINT			  NOT NULL ,
   person_id BIGINT			  NOT NULL ,
  survey_concept_id			  			  INTEGER			  NOT NULL ,
  survey_start_date				     	  DATE			  	NULL ,
  survey_start_datetime				  	TIMESTAMP			NULL ,
  survey_end_date						      DATE				  NULL ,
  survey_end_datetime					    TIMESTAMP			NOT NULL ,
  provider_id							        BIGINT			  NULL ,
  assisted_concept_id	  				  INTEGER			  NULL ,
  respondent_type_concept_id			INTEGER			  NULL ,
  timing_concept_id						    INTEGER			  NULL ,
  collection_method_concept_id		INTEGER			  NULL ,
  assisted_source_value		  			VARCHAR(50)		NULL ,
  respondent_type_source_value		VARCHAR(100)  NULL ,
  timing_source_value					    VARCHAR(100)	NULL ,
  collection_method_source_value	VARCHAR(100)	NULL ,
  survey_source_value					    VARCHAR(100)	NULL ,
  survey_source_concept_id				INTEGER			  NULL ,
  survey_source_identifier				VARCHAR(100)	NULL ,
  validated_survey_concept_id			INTEGER			  NULL ,
  validated_survey_source_value		VARCHAR(100)	NULL ,
  survey_version_number					  VARCHAR(20)		NULL ,
  visit_occurrence_id					    BIGINT			  NULL ,
  visit_detail_id					BIGINT		NULL ,
  response_to_visit_occurrence_id	BIGINT			  NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE fact_relationship
 (domain_concept_id_1			INTEGER			NOT NULL ,
  fact_id_1						    BIGINT			NOT NULL ,
  domain_concept_id_2			INTEGER			NOT NULL ,
  fact_id_2						    BIGINT			NOT NULL ,
  relationship_concept_id	INTEGER			NOT NULL
)
DISTSTYLE ALL;



/************************

Standardized health system data

************************/


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE location
 (location_id					  BIGINT			  NOT NULL ,
  address_1						  VARCHAR(50)		NULL ,
  address_2						  VARCHAR(50)		NULL ,
  city							    VARCHAR(50)		NULL ,
  state							    VARCHAR(2)		NULL ,
  zip							      VARCHAR(9)		NULL ,
  county						    VARCHAR(20)		NULL ,
  country						    VARCHAR(100)	NULL ,
  location_source_value VARCHAR(50)		NULL ,
  latitude						  FLOAT				  NULL ,
  longitude						  FLOAT				  NULL
)
DISTSTYLE ALL;


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE location_history --Table added
 (location_history_id           BIGINT      NOT NULL ,
  location_id			              BIGINT		  NOT NULL ,
  relationship_type_concept_id	INTEGER		  NULL ,  --Recent addition based on github discussion
  domain_id				              VARCHAR(50) NOT NULL ,
  entity_id				              BIGINT			NOT NULL ,
  start_date			              DATE			  NOT NULL ,
  end_date				              DATE			  NULL
)
DISTSTYLE ALL;


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE care_site
 (care_site_id						      BIGINT			  NOT NULL ,
  care_site_name						    VARCHAR(255)  NULL ,
  place_of_service_concept_id	  INTEGER			  NULL ,
  location_id						        BIGINT			  NULL ,
  care_site_source_value			  VARCHAR(50)		NULL ,
  place_of_service_source_value VARCHAR(50)		NULL
)
DISTSTYLE ALL;


--HINT DISTRIBUTE ON RANDOM
CREATE TABLE provider
 (provider_id					        BIGINT			  NOT NULL ,
  provider_name					      VARCHAR(255)	NULL ,
  NPI							            VARCHAR(20)		NULL ,
  DEA							            VARCHAR(20)		NULL ,
  specialty_concept_id			  INTEGER			  NULL ,
  care_site_id					      BIGINT			  NULL ,
  year_of_birth					      INTEGER			  NULL ,
  gender_concept_id				    INTEGER			  NULL ,
  provider_source_value			  VARCHAR(50)		NULL ,
  specialty_source_value			VARCHAR(50)		NULL ,
  specialty_source_concept_id	INTEGER			  NULL ,
  gender_source_value			    VARCHAR(50)		NULL ,
  gender_source_concept_id		INTEGER			  NULL
)
DISTSTYLE ALL;


/************************

Standardized health economics

************************/


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE payer_plan_period
 (payer_plan_period_id			    BIGINT			  NOT NULL ,
  person_id						          BIGINT			  NOT NULL ,
  contract_person_id            BIGINT        NULL ,
  payer_plan_period_start_date  DATE			    NOT NULL ,
  payer_plan_period_end_date		DATE			    NOT NULL ,
  payer_concept_id              INTEGER       NULL ,
  plan_concept_id               INTEGER       NULL ,
  contract_concept_id           INTEGER       NULL ,
  sponsor_concept_id            INTEGER       NULL ,
  stop_reason_concept_id        INTEGER       NULL ,
  payer_source_value				    VARCHAR(50)	  NULL ,
  payer_source_concept_id       INTEGER       NULL ,
  plan_source_value				      VARCHAR(50)	  NULL ,
  plan_source_concept_id        INTEGER       NULL ,
  contract_source_value         VARCHAR(50)   NULL ,
  contract_source_concept_id    INTEGER       NULL ,
  sponsor_source_value          VARCHAR(50)   NULL ,
  sponsor_source_concept_id     INTEGER       NULL ,
  family_source_value			      VARCHAR(50)	  NULL ,
  stop_reason_source_value      VARCHAR(50)   NULL ,
  stop_reason_source_concept_id INTEGER       NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE ON KEY(person_id)
CREATE TABLE cost
 (cost_id						        BIGINT	    NOT NULL ,
   person_id BIGINT		  NOT NULL,
  cost_event_id					    BIGINT      NOT NULL ,
  cost_domain_id				    VARCHAR(20) NOT NULL ,
--cost_event_table_concept_id	INTEGER		NOT NULL , /*This is still in discussion and most likely will replace cost_domain_id at 9/4 meeting*/
  cost_concept_id				    INTEGER		  NOT NULL ,
  cost_type_concept_id		  INTEGER     NOT NULL ,
  currency_concept_id			  INTEGER		  NULL ,
  cost							        FLOAT		    NULL ,
  incurred_date					    DATE		    NOT NULL ,
  billed_date					      DATE		    NULL ,
  paid_date						      DATE		    NULL ,
  revenue_code_concept_id		INTEGER		  NULL ,
  drg_concept_id			      INTEGER		  NULL ,
  cost_source_value				  VARCHAR(50)	NULL ,
  cost_source_concept_id	  INTEGER		  NULL ,
  revenue_code_source_value VARCHAR(50) NULL ,
  drg_source_value			    VARCHAR(3)	NULL ,
  payer_plan_period_id			BIGINT		  NULL
)
DISTKEY(person_id);


/************************

Standardized derived elements

************************/


--HINT DISTRIBUTE_ON_KEY(subject_id) 
CREATE TABLE cohort
 (cohort_definition_id	BIGINT		NOT NULL ,
  subject_id						BIGINT		NOT NULL ,
  cohort_start_date			DATE			NOT NULL ,
  cohort_end_date				DATE			NOT NULL
)
DISTKEY(subject_id);


--HINT DISTRIBUTE_ON_KEY(subject_id) 
CREATE TABLE cohort_attribute
 (cohort_definition_id		BIGINT		NOT NULL ,
  subject_id						  BIGINT		NOT NULL ,
  cohort_start_date				DATE			NOT NULL ,
  cohort_end_date				  DATE			NOT NULL ,
  attribute_definition_id BIGINT		NOT NULL ,
  value_as_number				  FLOAT			NULL ,
  value_as_concept_id			INTEGER		NULL
)
DISTKEY(subject_id);


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE drug_era
 (drug_era_id					BIGINT			NOT NULL ,
  person_id						BIGINT			NOT NULL ,
  drug_concept_id			INTEGER			NOT NULL ,
  drug_era_start_date	DATE			  NOT NULL ,
  drug_era_end_date		DATE			  NOT NULL ,
  drug_exposure_count	INTEGER			NULL ,
  gap_days						INTEGER			NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE dose_era
 (dose_era_id					  BIGINT			NOT NULL ,
  person_id						  BIGINT			NOT NULL ,
  drug_concept_id				INTEGER			NOT NULL ,
  unit_concept_id				INTEGER			NOT NULL ,
  dose_value						FLOAT			  NOT NULL ,
  dose_era_start_date		DATE			  NOT NULL ,
  dose_era_end_date	    DATE			  NOT NULL
)
DISTKEY(person_id);


--HINT DISTRIBUTE_ON_KEY(person_id) 
CREATE TABLE condition_era
 (condition_era_id				    BIGINT			NOT NULL ,
  person_id						        BIGINT			NOT NULL ,
  condition_concept_id			  INTEGER			NOT NULL ,
  condition_era_start_date		DATE			  NOT NULL ,
  condition_era_end_date			DATE			  NOT NULL ,
  condition_occurrence_count	INTEGER			NULL
)
DISTKEY(person_id);