2019-08-28 15:02:47 +00:00
<!DOCTYPE html>
2020-04-27 20:35:41 +00:00
< html >
2019-08-28 15:02:47 +00:00
< head >
< meta charset = "utf-8" / >
< meta name = "generator" content = "pandoc" / >
2020-04-27 20:35:41 +00:00
< meta http-equiv = "X-UA-Compatible" content = "IE=EDGE" / >
2019-08-28 15:02:47 +00:00
< title > index.utf8< / title >
2021-01-06 15:52:57 +00:00
< script src = "site_libs/header-attrs-2.6/header-attrs.js" > < / script >
2019-08-28 15:02:47 +00:00
< script src = "site_libs/jquery-1.11.3/jquery.min.js" > < / script >
< meta name = "viewport" content = "width=device-width, initial-scale=1" / >
< link href = "site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel = "stylesheet" / >
< script src = "site_libs/bootstrap-3.3.5/js/bootstrap.min.js" > < / script >
< script src = "site_libs/bootstrap-3.3.5/shim/html5shiv.min.js" > < / script >
< script src = "site_libs/bootstrap-3.3.5/shim/respond.min.js" > < / script >
< script src = "site_libs/navigation-1.1/tabsets.js" > < / script >
< link href = "site_libs/highlightjs-9.12.0/default.css" rel = "stylesheet" / >
< script src = "site_libs/highlightjs-9.12.0/highlight.js" > < / script >
< link href = "site_libs/font-awesome-5.1.0/css/all.css" rel = "stylesheet" / >
< link href = "site_libs/font-awesome-5.1.0/css/v4-shims.css" rel = "stylesheet" / >
< link rel = 'shortcut icon' type = 'image/x-icon' href = 'favicon.ico' / >
2021-01-06 15:52:57 +00:00
< style type = "text/css" >
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
span.underline{text-decoration: underline;}
div.column{display: inline-block; vertical-align: top; width: 50%;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
< / style >
2019-08-28 15:02:47 +00:00
< style type = "text/css" > code { white-space : pre ; } < / style >
< style type = "text/css" >
pre:not([class]) {
background-color: white;
}
< / style >
< script type = "text/javascript" >
if (window.hljs) {
hljs.configure({languages: []});
hljs.initHighlightingOnLoad();
if (document.readyState & & document.readyState === "complete") {
window.setTimeout(function() { hljs.initHighlighting(); }, 0);
}
}
< / script >
< style type = "text/css" >
h1 {
font-size: 34px;
}
h1.title {
font-size: 38px;
}
h2 {
font-size: 30px;
}
h3 {
font-size: 24px;
}
h4 {
font-size: 18px;
}
h5 {
font-size: 16px;
}
h6 {
font-size: 12px;
}
.table th:not([align]) {
text-align: left;
}
< / style >
2021-01-06 15:52:57 +00:00
2019-08-28 15:02:47 +00:00
< link rel = "stylesheet" href = "style.css" type = "text/css" / >
< style type = "text/css" >
.main-container {
max-width: 940px;
margin-left: auto;
margin-right: auto;
}
code {
color: inherit;
background-color: rgba(0, 0, 0, 0.04);
}
img {
max-width:100%;
}
.tabbed-pane {
padding-top: 12px;
}
.html-widget {
margin-bottom: 20px;
}
button.code-folding-btn:focus {
outline: none;
}
summary {
display: list-item;
}
< / style >
< style type = "text/css" >
/* padding for bootstrap navbar */
body {
padding-top: 51px;
padding-bottom: 40px;
}
/* offset scroll position for anchor links (for fixed navbar) */
.section h1 {
padding-top: 56px;
margin-top: -56px;
}
.section h2 {
padding-top: 56px;
margin-top: -56px;
}
.section h3 {
padding-top: 56px;
margin-top: -56px;
}
.section h4 {
padding-top: 56px;
margin-top: -56px;
}
.section h5 {
padding-top: 56px;
margin-top: -56px;
}
.section h6 {
padding-top: 56px;
margin-top: -56px;
}
.dropdown-submenu {
position: relative;
}
.dropdown-submenu>.dropdown-menu {
top: 0;
left: 100%;
margin-top: -6px;
margin-left: -1px;
border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
display: block;
}
.dropdown-submenu>a:after {
display: block;
content: " ";
float: right;
width: 0;
height: 0;
border-color: transparent;
border-style: solid;
border-width: 5px 0 5px 5px;
border-left-color: #cccccc;
margin-top: 5px;
margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
border-left-color: #ffffff;
}
.dropdown-submenu.pull-left {
float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
left: -100%;
margin-left: 10px;
border-radius: 6px 0 6px 6px;
}
< / style >
< script >
// manage active state of menu based on current page
$(document).ready(function () {
// active menu anchor
href = window.location.pathname
href = href.substr(href.lastIndexOf('/') + 1)
if (href === "")
href = "index.html";
var menuAnchor = $('a[href="' + href + '"]');
// mark it active
menuAnchor.parent().addClass('active');
// if it's got a parent navbar menu mark it active as well
menuAnchor.closest('li.dropdown').addClass('active');
});
< / script >
<!-- tabsets -->
< style type = "text/css" >
.tabset-dropdown > .nav-tabs {
display: inline-table;
max-height: 500px;
min-height: 44px;
overflow-y: auto;
background: white;
border: 1px solid #ddd;
border-radius: 4px;
}
.tabset-dropdown > .nav-tabs > li.active:before {
content: "";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
content: " ";
border: none;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
content: "";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}
.tabset-dropdown > .nav-tabs > li.active {
display: block;
}
.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
border: none;
display: inline-block;
border-radius: 4px;
2020-04-27 20:35:41 +00:00
background-color: transparent;
2019-08-28 15:02:47 +00:00
}
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
display: block;
float: none;
}
.tabset-dropdown > .nav-tabs > li {
display: none;
}
< / style >
2020-04-27 20:35:41 +00:00
<!-- code folding -->
2019-08-28 15:02:47 +00:00
2020-04-27 20:35:41 +00:00
< / head >
< body >
< div class = "container-fluid main-container" >
2019-08-28 15:02:47 +00:00
< div class = "navbar navbar-default navbar-fixed-top" role = "navigation" >
< div class = "container" >
< div class = "navbar-header" >
< button type = "button" class = "navbar-toggle collapsed" data-toggle = "collapse" data-target = "#navbar" >
< span class = "icon-bar" > < / span >
< span class = "icon-bar" > < / span >
< span class = "icon-bar" > < / span >
< / button >
< a class = "navbar-brand" href = "index.html" > < div > < img src = "ohdsi16x16.png" > < / img > OMOP Common Data Model < / div > < / a >
< / div >
< div id = "navbar" class = "navbar-collapse collapse" >
< ul class = "nav navbar-nav" >
< li >
< a href = "index.html" >
2021-01-06 15:52:57 +00:00
< span class = "fas fa-home" > < / span >
2019-08-28 15:02:47 +00:00
< / a >
< / li >
2021-02-19 02:37:32 +00:00
< li class = "dropdown" >
< a href = "#" class = "dropdown-toggle" data-toggle = "dropdown" role = "button" aria-expanded = "false" >
2021-01-06 15:52:57 +00:00
< span class = "fas fa-landmark" > < / span >
2019-10-31 19:06:09 +00:00
Background
2021-02-19 02:37:32 +00:00
< span class = "caret" > < / span >
2019-10-31 19:06:09 +00:00
< / a >
2021-02-19 02:37:32 +00:00
< ul class = "dropdown-menu" role = "menu" >
< li >
< a href = "background.html" > Model Background< / a >
< / li >
2021-09-22 19:39:44 +00:00
< li >
< a href = "cdmRefreshProcess.html" > CDM Refresh Process< / a >
< / li >
2021-02-19 02:37:32 +00:00
< li >
< a href = "vocabulary.html" > How the Vocabulary is Built< / a >
< / li >
< / ul >
2019-10-31 19:06:09 +00:00
< / li >
2021-09-22 19:39:44 +00:00
< li class = "dropdown" >
< a href = "#" class = "dropdown-toggle" data-toggle = "dropdown" role = "button" aria-expanded = "false" >
2021-01-06 15:52:57 +00:00
< span class = "fas fa-list-alt" > < / span >
2019-08-28 15:02:47 +00:00
Conventions
2021-09-22 19:39:44 +00:00
< span class = "caret" > < / span >
2019-08-28 15:02:47 +00:00
< / a >
2021-09-22 19:39:44 +00:00
< ul class = "dropdown-menu" role = "menu" >
< li >
< a href = "dataModelConventions.html" > General Conventions< / a >
< / li >
< li >
< a href = "ehrObsPeriods.html" > Observation Periods for EHR Data< / a >
< / li >
< li >
< a href = "cdmPrivacy.html" > Patient Privacy and OMOP< / a >
< / li >
< / ul >
2019-08-28 15:02:47 +00:00
< / li >
< li class = "dropdown" >
< a href = "#" class = "dropdown-toggle" data-toggle = "dropdown" role = "button" aria-expanded = "false" >
2021-01-06 15:52:57 +00:00
< span class = "fas fa-history" > < / span >
2019-08-28 15:02:47 +00:00
CDM Versions
< span class = "caret" > < / span >
< / a >
< ul class = "dropdown-menu" role = "menu" >
2021-02-19 02:37:32 +00:00
< li >
< a href = "cdm30.html" > CDM v3.0< / a >
< / li >
2019-08-28 15:02:47 +00:00
< li >
2021-09-22 19:39:44 +00:00
< a href = "cdm60.html" > CDM v6.0< / a >
2019-08-28 15:02:47 +00:00
< / li >
< li >
2021-09-22 19:39:44 +00:00
< a href = "cdm53.html" > CDM v5.3< / a >
< / li >
< li class = "dropdown-submenu" >
< a href = "#" class = "dropdown-toggle" data-toggle = "dropdown" role = "button" aria-expanded = "false" > NEW CDM v5.4< / a >
< ul class = "dropdown-menu" role = "menu" >
< li >
< a href = "cdm54.html" > CDM v5.4< / a >
< / li >
< li >
< a href = "cdm54Changes.html" > Changes from CDM v5.3< / a >
< / li >
< / ul >
2019-08-28 15:02:47 +00:00
< / li >
< / ul >
< / li >
2019-10-31 19:06:09 +00:00
< li class = "dropdown" >
< a href = "#" class = "dropdown-toggle" data-toggle = "dropdown" role = "button" aria-expanded = "false" >
2021-01-06 15:52:57 +00:00
< span class = "fas fa-plus-square" > < / span >
2019-10-31 19:06:09 +00:00
Proposals
< span class = "caret" > < / span >
< / a >
< ul class = "dropdown-menu" role = "menu" >
< li >
2021-09-22 19:39:44 +00:00
< a href = "https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal" > Under Review< / a >
2019-10-31 19:06:09 +00:00
< / li >
< li class = "dropdown-submenu" >
< a href = "#" class = "dropdown-toggle" data-toggle = "dropdown" role = "button" aria-expanded = "false" > Accepted< / a >
< ul class = "dropdown-menu" role = "menu" >
< li >
< a href = "https://github.com/OHDSI/CommonDataModel/issues/252" > Region_concept_id< / a >
< / li >
< / ul >
< / li >
< / ul >
< / li >
2020-10-06 15:11:13 +00:00
< li class = "dropdown" >
< a href = "#" class = "dropdown-toggle" data-toggle = "dropdown" role = "button" aria-expanded = "false" >
2021-01-06 15:52:57 +00:00
< span class = "fas fa-question" > < / span >
2019-08-28 15:02:47 +00:00
2021-09-22 19:39:44 +00:00
How to
2020-10-06 15:11:13 +00:00
< span class = "caret" > < / span >
2019-08-28 15:02:47 +00:00
< / a >
2020-10-06 15:11:13 +00:00
< ul class = "dropdown-menu" role = "menu" >
< li >
2021-09-22 19:39:44 +00:00
< a href = "download.html" > Download the DDL< / a >
2020-10-06 15:11:13 +00:00
< / li >
< li >
2021-09-22 19:39:44 +00:00
< a href = "cdmRPackage.html" > Use the CDM R Package< / a >
< / li >
< li >
< a href = "drug_dose.html" > Calculate Drug Dose< / a >
2020-10-06 15:11:13 +00:00
< / li >
< / ul >
2019-08-28 15:02:47 +00:00
< / li >
2020-04-27 20:35:41 +00:00
< li class = "dropdown" >
< a href = "#" class = "dropdown-toggle" data-toggle = "dropdown" role = "button" aria-expanded = "false" >
2021-09-22 19:39:44 +00:00
< span class = "fas fa-life-ring" > < / span >
2019-08-28 15:02:47 +00:00
2021-09-22 19:39:44 +00:00
Support
2020-04-27 20:35:41 +00:00
< span class = "caret" > < / span >
2019-08-28 15:02:47 +00:00
< / a >
2020-04-27 20:35:41 +00:00
< ul class = "dropdown-menu" role = "menu" >
< li >
2021-09-22 19:39:44 +00:00
< a href = "faq.html" > FAQ< / a >
2020-04-27 20:35:41 +00:00
< / li >
2020-10-06 15:11:13 +00:00
< li >
2021-09-22 19:39:44 +00:00
< a href = "sqlScripts.html" > SQL Scripts< / a >
2020-10-06 15:11:13 +00:00
< / li >
< li >
2021-09-22 19:39:44 +00:00
< a href = "contribute.html" > Ask a Question< / a >
2020-04-27 20:35:41 +00:00
< / li >
< / ul >
2019-08-28 15:02:47 +00:00
< / li >
< / ul >
< ul class = "nav navbar-nav navbar-right" >
2019-10-31 19:06:09 +00:00
< li >
< a href = "https://github.com/OHDSI/CommonDataModel" >
2021-09-22 19:39:44 +00:00
< span class = "fas fa-github" > < / span >
2019-10-31 19:06:09 +00:00
< / a >
< / li >
2019-08-28 15:02:47 +00:00
< / ul >
< / div > <!-- /.nav - collapse -->
< / div > <!-- /.container -->
< / div > <!-- /.navbar -->
< div class = "fluid-row" id = "header" >
< h1 class = "title toc-ignore" > < div >
< img src = "ohdsi40x40.png" > < / img > OMOP Common Data Model
< / div > < / h1 >
< / div >
2021-09-22 19:39:44 +00:00
< p > The OMOP Common Data Model is managed by the OHDSI CDM Working Group. If you would like to join our group please fill out < a href = "https://forms.office.com/Pages/ResponsePage.aspx?id=lAAPoyCRq0q6TOVQkCOy1ZyG6Ud_r2tKuS0HcGnqiQZUOVJFUzBFWE1aSVlLN0ozR01MUVQ4T0RGNyQlQCN0PWcu" > this form< / a > and check “Common Data Model” to be added to our Microsoft Teams environment. This working group endeavors to maintain the OMOP CDM as a living model by soliciting and responding to requests from the community based on use cases and research purposes. For more information on the CDM refresh process please see the description < a href = "http://ohdsi.github.io/CommonDataModel/cdmRefreshProcess.html" > here< / a > . You will find information on our meetings and links to join at the end of this page.< / p >
< div id = "current-cdm-version" class = "section level2" >
< h2 > Current CDM Version< / h2 >
< p > The current CDM version is < a href = "http://ohdsi.github.io/CommonDataModel/cdm54.html" > CDM v5.4< / a > , depicted below. This CDM version was developed over the course of a year by considering requests that were sent via our < a href = "https://github.com/OHDSI/CommonDataModel/issues" > issues page< / a > . The list of proposed changes was then shared with the community in multiple ways: through discussions at the weekly OHDSI Community calls, discussions with the OHDSI Steering Committee, and discussions with all potentially affected workgroups. The < a href = "http://ohdsi.github.io/CommonDataModel/cdm54Changes.html" > final changes< / a > were then delivered to the Community through a new R package designed to dynamically generate the DDLs and documentation for all supported SQL dialects.< / p >
< ul >
< li > < a href = "https://github.com/OHDSI/CommonDataModel/tree/v5.4.0" > Link to DDLs for CDM v5.4< / a > < / li >
< li > < a href = "https://github.com/OHDSI/CommonDataModel/tree/master#readme" > Link to ReadMe for instructions on how to use the R package< / a > < / li >
< / ul >
< p > < img src = "images/cdm54.png" / > < / p >
2021-06-03 14:57:22 +00:00
< / div >
2021-09-22 19:39:44 +00:00
< div id = "cdm-wg-meeting-information" class = "section level2" >
< h2 > CDM WG Meeting Information< / h2 >
2021-06-03 14:45:05 +00:00
< p > The CDM working group meets the first and third Tuesday of the month. See below for links to the meetings.< / p >
< p > < strong > Every first Tuesday of the month at 1pm est< / strong > < a href = "https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1601910741972?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%2281c21b6d-448d-4634-abbc-6b0962d1138a%22%7d" > Teams Meeting< / a > < / p >
< p > < strong > Every third Tuesday of the month at 1pm est< / strong > < a href = "https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1611000164347?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%223c193b7f-c2ab-4bcf-b88c-f89a6b1fba38%22%7d" > Teams Meeting< / a > < / p >
2021-09-22 19:39:44 +00:00
< p > < strong > Note< / strong > If you do you have access to the OHDSI Teams Tenet, either contact Clair Blacketer at < a href = "mailto:mblacke@its.jnj.com" class = "email" > mblacke@its.jnj.com< / a > or fill out [this form] (< a href = "https://forms.office.com/Pages/ResponsePage.aspx?id=lAAPoyCRq0q6TOVQkCOy1ZyG6Ud_r2tKuS0HcGnqiQZUOVJFUzBFWE1aSVlLN0ozR01MUVQ4T0RGNyQlQCN0PWcu" class = "uri" > https://forms.office.com/Pages/ResponsePage.aspx?id=lAAPoyCRq0q6TOVQkCOy1ZyG6Ud_r2tKuS0HcGnqiQZUOVJFUzBFWE1aSVlLN0ozR01MUVQ4T0RGNyQlQCN0PWcu< / a > ) and check “Common Data Model”< / p >
2019-10-31 19:06:09 +00:00
< div id = "cdm-wg-important-links" class = "section level3" >
< h3 > CDM WG Important Links< / h3 >
2019-08-28 15:02:47 +00:00
< ul >
2019-10-31 19:06:09 +00:00
< li > < a href = "https://drive.google.com/open?id=1DaNKe6ivIAZPJeI31VJ-pzNB9wS9hDqu" > Google Drive Location< / a > < / li >
< li > < a href = "https://docs.google.com/document/d/1WgKePjrI_cGdqn2XQCe1JdGaTzdMqU4p5ihkMt8fcAc/edit?usp=sharing" > Running Agenda< / a > < / li >
< li > < a href = "https://github.com/OHDSI/CommonDataModel" > CDM Github< / a > < / li >
2021-09-22 19:39:44 +00:00
< li > < a href = "http://ohdsi.github.io/CommonDataModel/cdmRefreshProcess.html" > Process for adopting CDM and Vocabulary changes< / a > < / li >
2019-08-28 15:02:47 +00:00
< / ul >
< / div >
2021-06-03 14:45:05 +00:00
< / div >
2019-08-28 15:02:47 +00:00
< / div >
< script >
// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
2021-01-06 15:52:57 +00:00
$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
2019-08-28 15:02:47 +00:00
}
$(document).ready(function () {
bootstrapStylePandocTables();
});
< / script >
2020-04-27 20:35:41 +00:00
<!-- tabsets -->
< script >
$(document).ready(function () {
window.buildTabsets("TOC");
});
$(document).ready(function () {
$('.tabset-dropdown > .nav-tabs > li').click(function () {
$(this).parent().toggleClass('nav-tabs-open')
});
});
< / script >
<!-- code folding -->
2019-08-28 15:02:47 +00:00
<!-- dynamically load mathjax for compatibility with self - contained -->
< script >
(function () {
var script = document.createElement("script");
script.type = "text/javascript";
script.src = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
document.getElementsByTagName("head")[0].appendChild(script);
})();
< / script >
< / body >
< / html >
