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/*********************************************************************************
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# Copyright 2018-08 Observational Health Data Sciences and Informatics
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#
#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
********************************************************************************/
/************************
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pdw script to create OMOP common data model version 6.0
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last revised: 27-Aug-2018
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Authors: Patrick Ryan, Christian Reich, Clair Blacketer
*************************/
/************************
Standardized vocabulary
************************/
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE concept (concept_id INTEGER NOT NULL ,
concept_name VARCHAR(255) NOT NULL ,
domain_id VARCHAR(20) NOT NULL ,
vocabulary_id VARCHAR(20) NOT NULL ,
concept_class_id VARCHAR(20) NOT NULL ,
standard_concept VARCHAR(1) NULL ,
concept_code VARCHAR(50) NOT NULL ,
valid_start_date DATE NOT NULL ,
valid_end_date DATE NOT NULL ,
invalid_reason VARCHAR(1) NULL
)
WITH (DISTRIBUTION = REPLICATE);
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE vocabulary (vocabulary_id VARCHAR(20) NOT NULL,
vocabulary_name VARCHAR(255) NOT NULL,
vocabulary_reference VARCHAR(255) NOT NULL,
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vocabulary_version VARCHAR(255) NOT NULL,
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vocabulary_concept_id INTEGER NOT NULL
)
WITH (DISTRIBUTION = REPLICATE);
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE domain (domain_id VARCHAR(20) NOT NULL,
domain_name VARCHAR(255) NOT NULL,
domain_concept_id INTEGER NOT NULL
)
WITH (DISTRIBUTION = REPLICATE);
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE concept_class (concept_class_id VARCHAR(20) NOT NULL,
concept_class_name VARCHAR(255) NOT NULL,
concept_class_concept_id INTEGER NOT NULL
)
WITH (DISTRIBUTION = REPLICATE);
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE concept_relationship (concept_id_1 INTEGER NOT NULL,
concept_id_2 INTEGER NOT NULL,
relationship_id VARCHAR(20) NOT NULL,
valid_start_date DATE NOT NULL,
valid_end_date DATE NOT NULL,
invalid_reason VARCHAR(1) NULL
)
WITH (DISTRIBUTION = REPLICATE);
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE relationship (relationship_id VARCHAR(20) NOT NULL,
relationship_name VARCHAR(255) NOT NULL,
is_hierarchical VARCHAR(1) NOT NULL,
defines_ancestry VARCHAR(1) NOT NULL,
reverse_relationship_id VARCHAR(20) NOT NULL,
relationship_concept_id INTEGER NOT NULL
)
WITH (DISTRIBUTION = REPLICATE);
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE concept_synonym (concept_id INTEGER NOT NULL,
concept_synonym_name VARCHAR(1000) NOT NULL,
language_concept_id INTEGER NOT NULL
)
WITH (DISTRIBUTION = REPLICATE);
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE concept_ancestor (ancestor_concept_id INTEGER NOT NULL,
descendant_concept_id INTEGER NOT NULL,
min_levels_of_separation INTEGER NOT NULL,
max_levels_of_separation INTEGER NOT NULL
)
WITH (DISTRIBUTION = REPLICATE);
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE source_to_concept_map (source_code VARCHAR(50) NOT NULL,
source_concept_id INTEGER NOT NULL,
source_vocabulary_id VARCHAR(20) NOT NULL,
source_code_description VARCHAR(255) NULL,
target_concept_id INTEGER NOT NULL,
target_vocabulary_id VARCHAR(20) NOT NULL,
valid_start_date DATE NOT NULL,
valid_end_date DATE NOT NULL,
invalid_reason VARCHAR(1) NULL
)
WITH (DISTRIBUTION = REPLICATE);
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE drug_strength (drug_concept_id INTEGER NOT NULL,
ingredient_concept_id INTEGER NOT NULL,
amount_value FLOAT NULL,
amount_unit_concept_id INTEGER NULL,
numerator_value FLOAT NULL,
numerator_unit_concept_id INTEGER NULL,
denominator_value FLOAT NULL,
denominator_unit_concept_id INTEGER NULL,
box_size INTEGER NULL,
valid_start_date DATE NOT NULL,
valid_end_date DATE NOT NULL,
invalid_reason VARCHAR(1) NULL
)
WITH (DISTRIBUTION = REPLICATE);
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE cohort_definition (cohort_definition_id INTEGER NOT NULL,
cohort_definition_name VARCHAR(255) NOT NULL,
cohort_definition_description VARCHAR(1000) NULL,
definition_type_concept_id INTEGER NOT NULL,
cohort_definition_syntax VARCHAR(1000) NULL,
subject_concept_id INTEGER NOT NULL,
cohort_initiation_date DATE NULL
)
WITH (DISTRIBUTION = REPLICATE);
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE attribute_definition (attribute_definition_id INTEGER NOT NULL,
attribute_name VARCHAR(255) NOT NULL,
attribute_description VARCHAR(1000) NULL,
attribute_type_concept_id INTEGER NOT NULL,
attribute_syntax VARCHAR(1000) NULL
)
WITH (DISTRIBUTION = REPLICATE);
/**************************
Standardized meta-data
***************************/
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE cdm_source
(cdm_source_name VARCHAR(255) NOT NULL ,
cdm_source_abbreviation VARCHAR(25) NULL ,
cdm_holder VARCHAR(255) NULL ,
source_description VARCHAR(1000) NULL ,
source_documentation_reference VARCHAR(255) NULL ,
cdm_etl_reference VARCHAR(255) NULL ,
source_release_date DATE NULL ,
cdm_release_date DATE NULL ,
cdm_version VARCHAR(10) NULL ,
vocabulary_version VARCHAR(20) NULL
)
WITH (DISTRIBUTION = REPLICATE);
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE metadata
(metadata_concept_id INTEGER NOT NULL ,
metadata_type_concept_id INTEGER NOT NULL ,
name VARCHAR(250) NOT NULL ,
value_as_string VARCHAR(1000) NULL ,
value_as_concept_id INTEGER NULL ,
metadata_date DATE NULL ,
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metadata_datetime DATETIME2 NULL
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)
WITH (DISTRIBUTION = REPLICATE);
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INSERT INTO metadata (name, value_as_string) --Added cdm version record
VALUES ('CDM Version', '6.0')
;
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/************************
Standardized clinical data
************************/
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE person
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(person_id BIGINT NOT NULL , --BIGINTs added
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gender_concept_id INTEGER NOT NULL ,
year_of_birth INTEGER NOT NULL ,
month_of_birth INTEGER NULL,
day_of_birth INTEGER NULL,
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birth_datetime DATETIME2 NULL,
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race_concept_id INTEGER NOT NULL,
ethnicity_concept_id INTEGER NOT NULL,
location_id INTEGER NULL,
provider_id INTEGER NULL,
care_site_id INTEGER NULL,
person_source_value VARCHAR(50) NULL,
gender_source_value VARCHAR(50) NULL,
gender_source_concept_id INTEGER NULL,
race_source_value VARCHAR(50) NULL,
race_source_concept_id INTEGER NULL,
ethnicity_source_value VARCHAR(50) NULL,
ethnicity_source_concept_id INTEGER NULL
)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE observation_period
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(observation_period_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
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observation_period_start_date DATE NOT NULL ,
observation_period_end_date DATE NOT NULL ,
period_type_concept_id INTEGER NOT NULL
)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE specimen
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(specimen_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
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specimen_concept_id INTEGER NOT NULL ,
specimen_type_concept_id INTEGER NOT NULL ,
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specimen_date DATE NULL ,
specimen_datetime DATETIME2 NOT NULL ,
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quantity FLOAT NULL ,
unit_concept_id INTEGER NULL ,
anatomic_site_concept_id INTEGER NULL ,
disease_status_concept_id INTEGER NULL ,
specimen_source_id VARCHAR(50) NULL ,
specimen_source_value VARCHAR(50) NULL ,
unit_source_value VARCHAR(50) NULL ,
anatomic_site_source_value VARCHAR(50) NULL ,
disease_status_source_value VARCHAR(50) NULL
)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE death
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(person_id BIGINT NOT NULL ,
death_date DATE NULL ,
death_datetime DATETIME2 NOT NULL ,
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death_type_concept_id INTEGER NOT NULL ,
cause_concept_id INTEGER NULL ,
cause_source_value VARCHAR(50) NULL,
cause_source_concept_id INTEGER NULL
)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE visit_occurrence
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(visit_occurrence_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
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visit_concept_id INTEGER NOT NULL ,
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visit_start_date DATE NULL ,
visit_start_datetime DATETIME2 NOT NULL ,
visit_end_date DATE NULL ,
visit_end_datetime DATETIME2 NOT NULL ,
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visit_type_concept_id INTEGER NOT NULL ,
provider_id INTEGER NULL,
care_site_id INTEGER NULL,
visit_source_value VARCHAR(50) NULL,
visit_source_concept_id INTEGER NULL ,
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admitted_from_concept_id INTEGER NULL , /*Changed from admitting_source_* */
admitted_from_source_value VARCHAR(50) NULL ,
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discharge_to_source_value VARCHAR(50) NULL ,
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discharge_to_concept_id INTEGER NULL ,
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preceding_visit_occurrence_id INTEGER NULL
)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE visit_detail
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(visit_detail_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
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visit_detail_concept_id INTEGER NOT NULL ,
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visit_detail_start_date DATE NULL ,
visit_detail_start_datetime DATETIME2 NOT NULL ,
visit_detail_end_date DATE NULL ,
visit_detail_end_datetime DATETIME2 NOT NULL ,
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visit_detail_type_concept_id INTEGER NOT NULL ,
provider_id INTEGER NULL ,
care_site_id INTEGER NULL ,
discharge_to_concept_id INTEGER NULL ,
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admitted_from_concept_id INTEGER NULL , /*Changed from admitting_source_* */
admitted_from_source_value VARCHAR(50) NULL ,
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visit_detail_source_value VARCHAR(50) NULL ,
visit_detail_source_concept_id INTEGER NULL ,
discharge_to_source_value VARCHAR(50) NULL ,
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preceding_visit_detail_id BIGINT NULL ,
visit_detail_parent_id BIGINT NULL ,
visit_occurrence_id BIGINT NOT NULL
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)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE procedure_occurrence
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(procedure_occurrence_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
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procedure_concept_id INTEGER NOT NULL ,
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procedure_date DATE NULL ,
procedure_datetime DATETIME2 NOT NULL ,
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procedure_type_concept_id INTEGER NOT NULL ,
modifier_concept_id INTEGER NULL ,
quantity INTEGER NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
procedure_source_value VARCHAR(50) NULL ,
procedure_source_concept_id INTEGER NULL ,
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modifier_source_value VARCHAR(50) NULL ,
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)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE drug_exposure
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(drug_exposure_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
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drug_concept_id INTEGER NOT NULL ,
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drug_exposure_start_date DATE NULL ,
drug_exposure_start_datetime DATETIME2 NOT NULL ,
drug_exposure_end_date DATE NULL ,
drug_exposure_end_datetime DATETIME2 NOT NULL ,
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verbatim_end_date DATE NULL ,
drug_type_concept_id INTEGER NOT NULL ,
stop_reason VARCHAR(20) NULL ,
refills INTEGER NULL ,
quantity FLOAT NULL ,
days_supply INTEGER NULL ,
sig VARCHAR(1000) NULL ,
route_concept_id INTEGER NULL ,
lot_number VARCHAR(50) NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
drug_source_value VARCHAR(50) NULL ,
drug_source_concept_id INTEGER NULL ,
route_source_value VARCHAR(50) NULL ,
dose_unit_source_value VARCHAR(50) NULL
)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE device_exposure
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(device_exposure_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
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device_concept_id INTEGER NOT NULL ,
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device_exposure_start_date DATE NULL ,
device_exposure_start_datetime DATETIME2 NOT NULL ,
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device_exposure_end_date DATE NULL ,
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device_exposure_end_datetime DATETIME2 NULL ,
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device_type_concept_id INTEGER NOT NULL ,
unique_device_id VARCHAR(50) NULL ,
quantity INTEGER NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
device_source_value VARCHAR(100) NULL ,
device_source_concept_id INTEGER NULL
)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE condition_occurrence
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(condition_occurrence_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
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condition_concept_id INTEGER NOT NULL ,
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condition_start_date DATE NULL ,
condition_start_datetime DATETIME2 NOT NULL ,
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condition_end_date DATE NULL ,
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condition_end_datetime DATETIME2 NULL ,
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condition_type_concept_id INTEGER NOT NULL ,
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condition_status_concept_id INTEGER NULL ,
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stop_reason VARCHAR(20) NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
condition_source_value VARCHAR(50) NULL ,
condition_source_concept_id INTEGER NULL ,
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condition_status_source_value VARCHAR(50) NULL
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)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE measurement
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(measurement_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
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measurement_concept_id INTEGER NOT NULL ,
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measurement_date DATE NULL ,
measurement_datetime DATETIME2 NOT NULL ,
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measurement_time VARCHAR(10) NULL,
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measurement_type_concept_id INTEGER NOT NULL ,
operator_concept_id INTEGER NULL ,
value_as_number FLOAT NULL ,
value_as_concept_id INTEGER NULL ,
unit_concept_id INTEGER NULL ,
range_low FLOAT NULL ,
range_high FLOAT NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
measurement_source_value VARCHAR(50) NULL ,
measurement_source_concept_id INTEGER NULL ,
unit_source_value VARCHAR(50) NULL ,
value_source_value VARCHAR(50) NULL
)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE note
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(note_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
note_event_id BIGINT NULL , --This and the field below added
note_domain_id VARCHAR(20) NULL , --This field may be removed in favor of the one below
--note_event_table_concept_id INTEGER NULL , --This may be added based on 9/4 meeting
note_date DATE NULL ,
note_datetime DATETIME2 NOT NULL ,
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note_type_concept_id INTEGER NOT NULL ,
note_class_concept_id INTEGER NOT NULL ,
note_title VARCHAR(250) NULL ,
note_text VARCHAR(1000) NULL ,
encoding_concept_id INTEGER NOT NULL ,
language_concept_id INTEGER NOT NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
note_source_value VARCHAR(50) NULL
)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE note_nlp
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(note_nlp_id BIGINT NOT NULL ,
note_id BIGINT NOT NULL ,
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section_concept_id INTEGER NULL ,
snippet VARCHAR(250) NULL ,
"offset" VARCHAR(250) NULL ,
lexical_variant VARCHAR(250) NOT NULL ,
note_nlp_concept_id INTEGER NULL ,
nlp_system VARCHAR(250) NULL ,
nlp_date DATE NOT NULL ,
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nlp_datetime DATETIME2 NULL ,
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term_exists VARCHAR(1) NULL ,
term_temporal VARCHAR(50) NULL ,
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term_modifiers VARCHAR(2000) NULL ,
note_nlp_source_concept_id INTEGER NULL
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)
WITH (DISTRIBUTION = REPLICATE);
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE observation
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(observation_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
observation_concept_id INTEGER NOT NULL ,
observation_date DATE NULL ,
observation_datetime DATETIME2 NOT NULL ,
observation_type_concept_id INTEGER NOT NULL ,
value_as_number FLOAT NULL ,
value_as_string VARCHAR(60) NULL ,
value_as_concept_id INTEGER NULL ,
qualifier_concept_id INTEGER NULL ,
unit_concept_id INTEGER NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
observation_source_value VARCHAR(50) NULL ,
observation_source_concept_id INTEGER NULL ,
unit_source_value VARCHAR(50) NULL ,
qualifier_source_value VARCHAR(50) NULL ,
observation_event_id BIGINT NULL , /* This will link back to the event table (SURVEY) on SURVEY_OCCURRENCE_ID, changed name to comply with COST and NOTE*/
observation_event_domain_id VARCHAR(20) NULL ,
--obs_event_table_concept_id INTEGER NULL , /* Changed name to comply with COST and NOTE. Had to use 'obs' for oracle restriction, may be added on 9/4*/
value_as_datetime DATETIME2 NULL
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)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE ON KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE survey_conduct --Table added
(survey_conduct_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
survey_concept_id INTEGER NOT NULL ,
survey_start_date DATE NULL ,
survey_start_datetime DATETIME2 NULL ,
survey_end_date DATE NULL ,
survey_end_datetime DATETIME2 NOT NULL ,
provider_id BIGINT NULL ,
assisted_concept_id INTEGER NULL ,
respondent_type_concept_id INTEGER NULL ,
timing_concept_id INTEGER NULL ,
collection_method_concept_id INTEGER NULL ,
assisted_source_value VARCHAR(50) NULL ,
respondent_type_source_value VARCHAR(100) NULL ,
timing_source_value VARCHAR(100) NULL ,
collection_method_source_value VARCHAR(100) NULL ,
survey_source_value VARCHAR(100) NULL ,
survey_source_concept_id INTEGER NULL ,
survey_source_identifier VARCHAR(100) NULL ,
validated_survey_concept_id INTEGER NULL ,
validated_survey_source_value VARCHAR(100) NULL ,
survey_version_number VARCHAR(20) NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
response_to_visit_occurrence_id BIGINT NULL
)
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE fact_relationship
(domain_concept_id_1 INTEGER NOT NULL ,
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fact_id_1 BIGINT NOT NULL ,
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domain_concept_id_2 INTEGER NOT NULL ,
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fact_id_2 BIGINT NOT NULL ,
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relationship_concept_id INTEGER NOT NULL
)
WITH (DISTRIBUTION = REPLICATE);
/************************
Standardized health system data
************************/
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE location
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(location_id BIGINT NOT NULL ,
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address_1 VARCHAR(50) NULL ,
address_2 VARCHAR(50) NULL ,
city VARCHAR(50) NULL ,
state VARCHAR(2) NULL ,
zip VARCHAR(9) NULL ,
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county VARCHAR(20) NULL ,
country VARCHAR(100) NULL ,
location_source_value VARCHAR(50) NULL ,
latitude FLOAT NULL ,
longitude FLOAT NULL
)
WITH (DISTRIBUTION = REPLICATE);
--HINT DISTRIBUTE ON RANDOM
IF XACT_STATE() = 1 COMMIT; CREATE TABLE location_history --Table added
(location_history_id BIGINT NOT NULL ,
location_id BIGINT NOT NULL ,
relationship_type_concept_id INTEGER NULL , --Recent addition based on github discussion
domain_id VARCHAR(50) NOT NULL ,
entity_id BIGINT NOT NULL ,
start_date DATE NOT NULL ,
end_date DATE NULL
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)
WITH (DISTRIBUTION = REPLICATE);
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE care_site
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(care_site_id BIGINT NOT NULL ,
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care_site_name VARCHAR(255) NULL ,
place_of_service_concept_id INTEGER NULL ,
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location_id BIGINT NULL ,
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care_site_source_value VARCHAR(50) NULL ,
place_of_service_source_value VARCHAR(50) NULL
)
WITH (DISTRIBUTION = REPLICATE);
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--HINT DISTRIBUTE ON RANDOM
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE provider
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(provider_id BIGINT NOT NULL ,
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provider_name VARCHAR(255) NULL ,
NPI VARCHAR(20) NULL ,
DEA VARCHAR(20) NULL ,
specialty_concept_id INTEGER NULL ,
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care_site_id BIGINT NULL ,
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year_of_birth INTEGER NULL ,
gender_concept_id INTEGER NULL ,
provider_source_value VARCHAR(50) NULL ,
specialty_source_value VARCHAR(50) NULL ,
specialty_source_concept_id INTEGER NULL ,
gender_source_value VARCHAR(50) NULL ,
gender_source_concept_id INTEGER NULL
)
WITH (DISTRIBUTION = REPLICATE);
/************************
Standardized health economics
************************/
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE payer_plan_period
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(payer_plan_period_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
contract_person_id BIGINT NULL ,
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payer_plan_period_start_date DATE NOT NULL ,
payer_plan_period_end_date DATE NOT NULL ,
payer_concept_id INTEGER NULL ,
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plan_concept_id INTEGER NULL ,
contract_concept_id INTEGER NULL ,
sponsor_concept_id INTEGER NULL ,
stop_reason_concept_id INTEGER NULL ,
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payer_source_value VARCHAR(50) NULL ,
payer_source_concept_id INTEGER NULL ,
plan_source_value VARCHAR(50) NULL ,
plan_source_concept_id INTEGER NULL ,
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contract_source_value VARCHAR(50) NULL ,
contract_source_concept_id INTEGER NULL ,
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sponsor_source_value VARCHAR(50) NULL ,
sponsor_source_concept_id INTEGER NULL ,
family_source_value VARCHAR(50) NULL ,
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stop_reason_source_value VARCHAR(50) NULL ,
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stop_reason_source_concept_id INTEGER NULL
)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE ON KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE cost
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(cost_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL,
cost_event_id BIGINT NOT NULL ,
cost_domain_id VARCHAR(20) NOT NULL ,
--cost_event_table_concept_id INTEGER NOT NULL , /*This is still in discussion and most likely will replace cost_domain_id at 9/4 meeting*/
cost_concept_id INTEGER NOT NULL ,
cost_type_concept_id INTEGER NOT NULL ,
currency_concept_id INTEGER NULL ,
cost FLOAT NULL ,
incurred_date DATE NOT NULL ,
billed_date DATE NULL ,
paid_date DATE NULL ,
revenue_code_concept_id INTEGER NULL ,
drg_concept_id INTEGER NULL ,
cost_source_value VARCHAR(50) NULL ,
cost_source_concept_id INTEGER NULL ,
revenue_code_source_value VARCHAR(50) NULL ,
drg_source_value VARCHAR(3) NULL ,
payer_plan_period_id BIGINT NULL
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)
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WITH (DISTRIBUTION = HASH(person_id));
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/************************
Standardized derived elements
************************/
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--HINT DISTRIBUTE_ON_KEY(subject_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE cohort
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(cohort_definition_id BIGINT NOT NULL ,
subject_id BIGINT NOT NULL ,
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cohort_start_date DATE NOT NULL ,
cohort_end_date DATE NOT NULL
)
WITH (DISTRIBUTION = HASH(subject_id));
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--HINT DISTRIBUTE_ON_KEY(subject_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE cohort_attribute
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(cohort_definition_id BIGINT NOT NULL ,
subject_id BIGINT NOT NULL ,
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cohort_start_date DATE NOT NULL ,
cohort_end_date DATE NOT NULL ,
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attribute_definition_id BIGINT NOT NULL ,
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value_as_number FLOAT NULL ,
value_as_concept_id INTEGER NULL
)
WITH (DISTRIBUTION = HASH(subject_id));
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE drug_era
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(drug_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
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drug_concept_id INTEGER NOT NULL ,
drug_era_start_date DATE NOT NULL ,
drug_era_end_date DATE NOT NULL ,
drug_exposure_count INTEGER NULL ,
gap_days INTEGER NULL
)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE dose_era
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(dose_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
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drug_concept_id INTEGER NOT NULL ,
unit_concept_id INTEGER NOT NULL ,
dose_value FLOAT NOT NULL ,
dose_era_start_date DATE NOT NULL ,
dose_era_end_date DATE NOT NULL
)
WITH (DISTRIBUTION = HASH(person_id));
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--HINT DISTRIBUTE_ON_KEY(person_id)
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IF XACT_STATE() = 1 COMMIT; CREATE TABLE condition_era
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(condition_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
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condition_concept_id INTEGER NOT NULL ,
condition_era_start_date DATE NOT NULL ,
condition_era_end_date DATE NOT NULL ,
condition_occurrence_count INTEGER NULL
)
WITH (DISTRIBUTION = HASH(person_id));
