179 lines
7.9 KiB
MySQL
179 lines
7.9 KiB
MySQL
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/*********************************************************************************
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# Copyright 2014 Observational Health Data Sciences and Informatics
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#
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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********************************************************************************/
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/************************
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####### # # ####### ###### ##### ###### # # ##### ### ###### # # #####
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####### # # ####### # ##### ###### # # ## ##### ### ### # # # ##### #### # # #### # # # # # # # # # ####
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@targetdialect script to create the required primary keys within the OMOP common data model, version 6.0
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last revised: 30-Aug-2018
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author: Patrick Ryan, Clair Blacketer
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description: These primary keys are considered a minimal requirement to ensure adequate performance of analyses.
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*************************/
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/************************
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*************************
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*************************
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Primary key constraints
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************************/
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/************************
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Standardized vocabulary
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ALTER TABLE @cdmDatabaseSchema.concept ADD CONSTRAINT xpk_concept PRIMARY KEY NONCLUSTERED (concept_id);
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ALTER TABLE @cdmDatabaseSchema.vocabulary ADD CONSTRAINT xpk_vocabulary PRIMARY KEY NONCLUSTERED (vocabulary_id);
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ALTER TABLE @cdmDatabaseSchema.domain ADD CONSTRAINT xpk_domain PRIMARY KEY NONCLUSTERED (domain_id);
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ALTER TABLE @cdmDatabaseSchema.concept_class ADD CONSTRAINT xpk_concept_class PRIMARY KEY NONCLUSTERED (concept_class_id);
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ALTER TABLE @cdmDatabaseSchema.concept_relationship ADD CONSTRAINT xpk_concept_relationship PRIMARY KEY NONCLUSTERED (concept_id_1,concept_id_2,relationship_id);
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ALTER TABLE @cdmDatabaseSchema.relationship ADD CONSTRAINT xpk_relationship PRIMARY KEY NONCLUSTERED (relationship_id);
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ALTER TABLE @cdmDatabaseSchema.concept_ancestor ADD CONSTRAINT xpk_concept_ancestor PRIMARY KEY NONCLUSTERED (ancestor_concept_id,descendant_concept_id);
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ALTER TABLE @cdmDatabaseSchema.source_to_concept_map ADD CONSTRAINT xpk_source_to_concept_map PRIMARY KEY NONCLUSTERED (source_vocabulary_id,target_concept_id,source_code,valid_end_date);
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ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT xpk_drug_strength PRIMARY KEY NONCLUSTERED (drug_concept_id, ingredient_concept_id);
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ALTER TABLE @cdmDatabaseSchema.cohort_definition ADD CONSTRAINT xpk_cohort_definition PRIMARY KEY NONCLUSTERED (cohort_definition_id);
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ALTER TABLE @cdmDatabaseSchema.attribute_definition ADD CONSTRAINT xpk_attribute_definition PRIMARY KEY NONCLUSTERED (attribute_definition_id);
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/**************************
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Standardized meta-data
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***************************/
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/************************
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Standardized clinical data
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/**PRIMARY KEY NONCLUSTERED constraints**/
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT xpk_person PRIMARY KEY NONCLUSTERED ( person_id ) ;
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ALTER TABLE @cdmDatabaseSchema.observation_period ADD CONSTRAINT xpk_observation_period PRIMARY KEY NONCLUSTERED ( observation_period_id ) ;
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ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT xpk_specimen PRIMARY KEY NONCLUSTERED ( specimen_id ) ;
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ALTER TABLE @cdmDatabaseSchema.death ADD CONSTRAINT xpk_death PRIMARY KEY NONCLUSTERED ( person_id ) ;
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT xpk_visit_occurrence PRIMARY KEY NONCLUSTERED ( visit_occurrence_id ) ;
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT xpk_visit_detail PRIMARY KEY NONCLUSTERED ( visit_detail_id ) ;
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ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT xpk_procedure_occurrence PRIMARY KEY NONCLUSTERED ( procedure_occurrence_id ) ;
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT xpk_drug_exposure PRIMARY KEY NONCLUSTERED ( drug_exposure_id ) ;
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ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT xpk_device_exposure PRIMARY KEY NONCLUSTERED ( device_exposure_id ) ;
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT xpk_condition_occurrence PRIMARY KEY NONCLUSTERED ( condition_occurrence_id ) ;
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT xpk_measurement PRIMARY KEY NONCLUSTERED ( measurement_id ) ;
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT xpk_note PRIMARY KEY NONCLUSTERED ( note_id ) ;
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ALTER TABLE @cdmDatabaseSchema.note_nlp ADD CONSTRAINT xpk_note_nlp PRIMARY KEY NONCLUSTERED ( note_nlp_id ) ;
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT xpk_observation PRIMARY KEY NONCLUSTERED ( observation_id ) ;
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ALTER TABLE @cdmDatabaseSchema.survey ADD CONSTRAINT xpk_survey PRIMARY KEY NONCLUSTERED ( survey_occurrence_id ) ;
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ALTER TABLE @cdmDatabaseSchema.episode_event ADD CONSTRAINT episode_event_pk PRIMARY KEY NONCLUSTERED ( episode_id, event_id, event_field_concept_id );
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/************************
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Standardized health system data
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ALTER TABLE @cdmDatabaseSchema.location ADD CONSTRAINT xpk_location PRIMARY KEY NONCLUSTERED ( location_id ) ;
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ALTER TABLE @cdmDatabaseSchema.location_history ADD CONSTRAINT xpk_location_history PRIMARY KEY NONCLUSTERED ( location_history_id ) ; -- May need to remove this one
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ALTER TABLE @cdmDatabaseSchema.care_site ADD CONSTRAINT xpk_care_site PRIMARY KEY NONCLUSTERED ( care_site_id ) ;
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ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT xpk_provider PRIMARY KEY NONCLUSTERED ( provider_id ) ;
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/************************
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Standardized health economics
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ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT xpk_payer_plan_period PRIMARY KEY NONCLUSTERED ( payer_plan_period_id ) ;
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ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT xpk_visit_cost PRIMARY KEY NONCLUSTERED ( cost_id ) ;
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/************************
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Standardized derived elements
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ALTER TABLE @cdmDatabaseSchema.cohort ADD CONSTRAINT xpk_cohort PRIMARY KEY NONCLUSTERED ( cohort_definition_id, subject_id, cohort_start_date, cohort_end_date ) ;
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ALTER TABLE @cdmDatabaseSchema.cohort_attribute ADD CONSTRAINT xpk_cohort_attribute PRIMARY KEY NONCLUSTERED ( cohort_definition_id, subject_id, cohort_start_date, cohort_end_date, attribute_definition_id ) ;
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ALTER TABLE @cdmDatabaseSchema.drug_era ADD CONSTRAINT xpk_drug_era PRIMARY KEY NONCLUSTERED ( drug_era_id ) ;
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ALTER TABLE @cdmDatabaseSchema.dose_era ADD CONSTRAINT xpk_dose_era PRIMARY KEY NONCLUSTERED ( dose_era_id ) ;
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ALTER TABLE @cdmDatabaseSchema.condition_era ADD CONSTRAINT xpk_condition_era PRIMARY KEY NONCLUSTERED ( condition_era_id ) ;
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