2021-09-22 19:39:44 +00:00
|
|
|
<!DOCTYPE html>
|
|
|
|
|
|
|
|
|
|
<html>
|
|
|
|
|
|
|
|
|
|
<head>
|
|
|
|
|
|
|
|
|
|
<meta charset="utf-8" />
|
|
|
|
|
<meta name="generator" content="pandoc" />
|
|
|
|
|
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
2023-02-08 20:04:22 +00:00
|
|
|
<title> CDM Refresh Process</title>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
2023-03-28 16:28:17 +00:00
|
|
|
<script src="site_libs/header-attrs-2.20/header-attrs.js"></script>
|
2022-01-13 18:59:03 +00:00
|
|
|
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
2021-09-22 19:39:44 +00:00
|
|
|
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
|
|
|
|
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
|
|
|
|
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
|
|
|
|
|
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
|
|
|
|
|
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
|
2022-01-13 18:59:03 +00:00
|
|
|
<style>h1 {font-size: 34px;}
|
|
|
|
|
h1.title {font-size: 38px;}
|
|
|
|
|
h2 {font-size: 30px;}
|
|
|
|
|
h3 {font-size: 24px;}
|
|
|
|
|
h4 {font-size: 18px;}
|
|
|
|
|
h5 {font-size: 16px;}
|
|
|
|
|
h6 {font-size: 12px;}
|
|
|
|
|
code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
|
|
|
|
|
pre:not([class]) { background-color: white }</style>
|
2021-09-22 19:39:44 +00:00
|
|
|
<script src="site_libs/jqueryui-1.11.4/jquery-ui.min.js"></script>
|
|
|
|
|
<link href="site_libs/tocify-1.9.1/jquery.tocify.css" rel="stylesheet" />
|
|
|
|
|
<script src="site_libs/tocify-1.9.1/jquery.tocify.js"></script>
|
|
|
|
|
<script src="site_libs/navigation-1.1/tabsets.js"></script>
|
|
|
|
|
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
|
|
|
|
|
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
|
|
|
|
|
<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
|
|
|
|
|
<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />
|
|
|
|
|
<link rel='shortcut icon' type='image/x-icon' href='favicon.ico' />
|
|
|
|
|
|
|
|
|
|
<style type="text/css">
|
|
|
|
|
code{white-space: pre-wrap;}
|
|
|
|
|
span.smallcaps{font-variant: small-caps;}
|
|
|
|
|
span.underline{text-decoration: underline;}
|
|
|
|
|
div.column{display: inline-block; vertical-align: top; width: 50%;}
|
|
|
|
|
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
|
|
|
|
|
ul.task-list{list-style: none;}
|
|
|
|
|
</style>
|
|
|
|
|
|
|
|
|
|
<style type="text/css">code{white-space: pre;}</style>
|
|
|
|
|
<script type="text/javascript">
|
|
|
|
|
if (window.hljs) {
|
|
|
|
|
hljs.configure({languages: []});
|
|
|
|
|
hljs.initHighlightingOnLoad();
|
|
|
|
|
if (document.readyState && document.readyState === "complete") {
|
|
|
|
|
window.setTimeout(function() { hljs.initHighlighting(); }, 0);
|
|
|
|
|
}
|
|
|
|
|
}
|
|
|
|
|
</script>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
2022-07-25 19:27:08 +00:00
|
|
|
|
2021-09-22 19:39:44 +00:00
|
|
|
<link rel="stylesheet" href="style.css" type="text/css" />
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<style type = "text/css">
|
|
|
|
|
.main-container {
|
|
|
|
|
max-width: 940px;
|
|
|
|
|
margin-left: auto;
|
|
|
|
|
margin-right: auto;
|
|
|
|
|
}
|
|
|
|
|
img {
|
|
|
|
|
max-width:100%;
|
|
|
|
|
}
|
|
|
|
|
.tabbed-pane {
|
|
|
|
|
padding-top: 12px;
|
|
|
|
|
}
|
|
|
|
|
.html-widget {
|
|
|
|
|
margin-bottom: 20px;
|
|
|
|
|
}
|
|
|
|
|
button.code-folding-btn:focus {
|
|
|
|
|
outline: none;
|
|
|
|
|
}
|
|
|
|
|
summary {
|
|
|
|
|
display: list-item;
|
|
|
|
|
}
|
2022-07-25 19:27:08 +00:00
|
|
|
details > summary > p:only-child {
|
|
|
|
|
display: inline;
|
|
|
|
|
}
|
2022-01-13 18:59:03 +00:00
|
|
|
pre code {
|
|
|
|
|
padding: 0;
|
|
|
|
|
}
|
2021-09-22 19:39:44 +00:00
|
|
|
</style>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<style type="text/css">
|
|
|
|
|
.dropdown-submenu {
|
|
|
|
|
position: relative;
|
|
|
|
|
}
|
|
|
|
|
.dropdown-submenu>.dropdown-menu {
|
|
|
|
|
top: 0;
|
|
|
|
|
left: 100%;
|
|
|
|
|
margin-top: -6px;
|
|
|
|
|
margin-left: -1px;
|
|
|
|
|
border-radius: 0 6px 6px 6px;
|
|
|
|
|
}
|
|
|
|
|
.dropdown-submenu:hover>.dropdown-menu {
|
|
|
|
|
display: block;
|
|
|
|
|
}
|
|
|
|
|
.dropdown-submenu>a:after {
|
|
|
|
|
display: block;
|
|
|
|
|
content: " ";
|
|
|
|
|
float: right;
|
|
|
|
|
width: 0;
|
|
|
|
|
height: 0;
|
|
|
|
|
border-color: transparent;
|
|
|
|
|
border-style: solid;
|
|
|
|
|
border-width: 5px 0 5px 5px;
|
|
|
|
|
border-left-color: #cccccc;
|
|
|
|
|
margin-top: 5px;
|
|
|
|
|
margin-right: -10px;
|
|
|
|
|
}
|
|
|
|
|
.dropdown-submenu:hover>a:after {
|
2022-01-13 18:59:03 +00:00
|
|
|
border-left-color: #adb5bd;
|
2021-09-22 19:39:44 +00:00
|
|
|
}
|
|
|
|
|
.dropdown-submenu.pull-left {
|
|
|
|
|
float: none;
|
|
|
|
|
}
|
|
|
|
|
.dropdown-submenu.pull-left>.dropdown-menu {
|
|
|
|
|
left: -100%;
|
|
|
|
|
margin-left: 10px;
|
|
|
|
|
border-radius: 6px 0 6px 6px;
|
|
|
|
|
}
|
|
|
|
|
</style>
|
|
|
|
|
|
2022-01-13 18:59:03 +00:00
|
|
|
<script type="text/javascript">
|
2021-09-22 19:39:44 +00:00
|
|
|
// manage active state of menu based on current page
|
|
|
|
|
$(document).ready(function () {
|
|
|
|
|
// active menu anchor
|
|
|
|
|
href = window.location.pathname
|
|
|
|
|
href = href.substr(href.lastIndexOf('/') + 1)
|
|
|
|
|
if (href === "")
|
|
|
|
|
href = "index.html";
|
|
|
|
|
var menuAnchor = $('a[href="' + href + '"]');
|
|
|
|
|
|
2023-02-08 20:04:22 +00:00
|
|
|
// mark the anchor link active (and if it's in a dropdown, also mark that active)
|
|
|
|
|
var dropdown = menuAnchor.closest('li.dropdown');
|
|
|
|
|
if (window.bootstrap) { // Bootstrap 4+
|
|
|
|
|
menuAnchor.addClass('active');
|
|
|
|
|
dropdown.find('> .dropdown-toggle').addClass('active');
|
|
|
|
|
} else { // Bootstrap 3
|
|
|
|
|
menuAnchor.parent().addClass('active');
|
|
|
|
|
dropdown.addClass('active');
|
|
|
|
|
}
|
2022-01-13 18:59:03 +00:00
|
|
|
|
|
|
|
|
// Navbar adjustments
|
|
|
|
|
var navHeight = $(".navbar").first().height() + 15;
|
|
|
|
|
var style = document.createElement('style');
|
|
|
|
|
var pt = "padding-top: " + navHeight + "px; ";
|
|
|
|
|
var mt = "margin-top: -" + navHeight + "px; ";
|
|
|
|
|
var css = "";
|
|
|
|
|
// offset scroll position for anchor links (for fixed navbar)
|
|
|
|
|
for (var i = 1; i <= 6; i++) {
|
|
|
|
|
css += ".section h" + i + "{ " + pt + mt + "}\n";
|
|
|
|
|
}
|
|
|
|
|
style.innerHTML = "body {" + pt + "padding-bottom: 40px; }\n" + css;
|
|
|
|
|
document.head.appendChild(style);
|
2021-09-22 19:39:44 +00:00
|
|
|
});
|
|
|
|
|
</script>
|
|
|
|
|
|
|
|
|
|
<!-- tabsets -->
|
|
|
|
|
|
|
|
|
|
<style type="text/css">
|
|
|
|
|
.tabset-dropdown > .nav-tabs {
|
|
|
|
|
display: inline-table;
|
|
|
|
|
max-height: 500px;
|
|
|
|
|
min-height: 44px;
|
|
|
|
|
overflow-y: auto;
|
|
|
|
|
border: 1px solid #ddd;
|
|
|
|
|
border-radius: 4px;
|
|
|
|
|
}
|
|
|
|
|
|
2023-03-28 16:28:17 +00:00
|
|
|
.tabset-dropdown > .nav-tabs > li.active:before, .tabset-dropdown > .nav-tabs.nav-tabs-open:before {
|
|
|
|
|
content: "\e259";
|
2021-09-22 19:39:44 +00:00
|
|
|
font-family: 'Glyphicons Halflings';
|
|
|
|
|
display: inline-block;
|
|
|
|
|
padding: 10px;
|
|
|
|
|
border-right: 1px solid #ddd;
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
|
2023-03-28 16:28:17 +00:00
|
|
|
content: "\e258";
|
2021-09-22 19:39:44 +00:00
|
|
|
font-family: 'Glyphicons Halflings';
|
2023-03-28 16:28:17 +00:00
|
|
|
border: none;
|
2021-09-22 19:39:44 +00:00
|
|
|
}
|
|
|
|
|
|
|
|
|
|
.tabset-dropdown > .nav-tabs > li.active {
|
|
|
|
|
display: block;
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
.tabset-dropdown > .nav-tabs > li > a,
|
|
|
|
|
.tabset-dropdown > .nav-tabs > li > a:focus,
|
|
|
|
|
.tabset-dropdown > .nav-tabs > li > a:hover {
|
|
|
|
|
border: none;
|
|
|
|
|
display: inline-block;
|
|
|
|
|
border-radius: 4px;
|
|
|
|
|
background-color: transparent;
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
|
|
|
|
|
display: block;
|
|
|
|
|
float: none;
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
.tabset-dropdown > .nav-tabs > li {
|
|
|
|
|
display: none;
|
|
|
|
|
}
|
|
|
|
|
</style>
|
|
|
|
|
|
|
|
|
|
<!-- code folding -->
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<style type="text/css">
|
|
|
|
|
|
|
|
|
|
#TOC {
|
|
|
|
|
margin: 25px 0px 20px 0px;
|
|
|
|
|
}
|
|
|
|
|
@media (max-width: 768px) {
|
|
|
|
|
#TOC {
|
|
|
|
|
position: relative;
|
|
|
|
|
width: 100%;
|
|
|
|
|
}
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
@media print {
|
|
|
|
|
.toc-content {
|
|
|
|
|
/* see https://github.com/w3c/csswg-drafts/issues/4434 */
|
|
|
|
|
float: right;
|
|
|
|
|
}
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
.toc-content {
|
|
|
|
|
padding-left: 30px;
|
|
|
|
|
padding-right: 40px;
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
div.main-container {
|
|
|
|
|
max-width: 1200px;
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
div.tocify {
|
|
|
|
|
width: 20%;
|
|
|
|
|
max-width: 260px;
|
|
|
|
|
max-height: 85%;
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
@media (min-width: 768px) and (max-width: 991px) {
|
|
|
|
|
div.tocify {
|
|
|
|
|
width: 25%;
|
|
|
|
|
}
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
@media (max-width: 767px) {
|
|
|
|
|
div.tocify {
|
|
|
|
|
width: 100%;
|
|
|
|
|
max-width: none;
|
|
|
|
|
}
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
.tocify ul, .tocify li {
|
|
|
|
|
line-height: 20px;
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
.tocify-subheader .tocify-item {
|
|
|
|
|
font-size: 0.90em;
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
.tocify .list-group-item {
|
|
|
|
|
border-radius: 0px;
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
</style>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
</head>
|
|
|
|
|
|
|
|
|
|
<body>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<div class="container-fluid main-container">
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<!-- setup 3col/9col grid for toc_float and main content -->
|
2022-01-13 18:59:03 +00:00
|
|
|
<div class="row">
|
2021-09-22 19:39:44 +00:00
|
|
|
<div class="col-xs-12 col-sm-4 col-md-3">
|
|
|
|
|
<div id="TOC" class="tocify">
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<div class="toc-content col-xs-12 col-sm-8 col-md-9">
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
|
|
|
|
<div class="container">
|
|
|
|
|
<div class="navbar-header">
|
2022-07-25 19:27:08 +00:00
|
|
|
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
2021-09-22 19:39:44 +00:00
|
|
|
<span class="icon-bar"></span>
|
|
|
|
|
<span class="icon-bar"></span>
|
|
|
|
|
<span class="icon-bar"></span>
|
|
|
|
|
</button>
|
|
|
|
|
<a class="navbar-brand" href="index.html"><div><img src="ohdsi16x16.png"></img> OMOP Common Data Model </div></a>
|
|
|
|
|
</div>
|
|
|
|
|
<div id="navbar" class="navbar-collapse collapse">
|
|
|
|
|
<ul class="nav navbar-nav">
|
|
|
|
|
<li>
|
|
|
|
|
<a href="index.html">
|
2023-02-08 20:04:22 +00:00
|
|
|
<span class="fa fa-house"></span>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
|
|
|
|
</a>
|
|
|
|
|
</li>
|
|
|
|
|
<li class="dropdown">
|
2022-07-25 19:27:08 +00:00
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
2022-01-13 18:59:03 +00:00
|
|
|
<span class="fa fa-landmark"></span>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
|
|
|
|
Background
|
|
|
|
|
|
|
|
|
|
<span class="caret"></span>
|
|
|
|
|
</a>
|
|
|
|
|
<ul class="dropdown-menu" role="menu">
|
|
|
|
|
<li>
|
|
|
|
|
<a href="background.html">Model Background</a>
|
|
|
|
|
</li>
|
|
|
|
|
<li>
|
|
|
|
|
<a href="cdmRefreshProcess.html">CDM Refresh Process</a>
|
|
|
|
|
</li>
|
|
|
|
|
<li>
|
|
|
|
|
<a href="vocabulary.html">How the Vocabulary is Built</a>
|
|
|
|
|
</li>
|
|
|
|
|
</ul>
|
|
|
|
|
</li>
|
|
|
|
|
<li class="dropdown">
|
2022-07-25 19:27:08 +00:00
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
2022-01-13 18:59:03 +00:00
|
|
|
<span class="fa fa-list-alt"></span>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
|
|
|
|
Conventions
|
|
|
|
|
|
|
|
|
|
<span class="caret"></span>
|
|
|
|
|
</a>
|
|
|
|
|
<ul class="dropdown-menu" role="menu">
|
|
|
|
|
<li>
|
|
|
|
|
<a href="dataModelConventions.html">General Conventions</a>
|
|
|
|
|
</li>
|
|
|
|
|
<li>
|
|
|
|
|
<a href="ehrObsPeriods.html">Observation Periods for EHR Data</a>
|
|
|
|
|
</li>
|
|
|
|
|
<li>
|
|
|
|
|
<a href="cdmPrivacy.html">Patient Privacy and OMOP</a>
|
|
|
|
|
</li>
|
|
|
|
|
</ul>
|
|
|
|
|
</li>
|
|
|
|
|
<li class="dropdown">
|
2022-07-25 19:27:08 +00:00
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
2022-01-13 18:59:03 +00:00
|
|
|
<span class="fa fa-history"></span>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
|
|
|
|
CDM Versions
|
|
|
|
|
|
|
|
|
|
<span class="caret"></span>
|
|
|
|
|
</a>
|
|
|
|
|
<ul class="dropdown-menu" role="menu">
|
|
|
|
|
<li>
|
|
|
|
|
<a href="cdm30.html">CDM v3.0</a>
|
|
|
|
|
</li>
|
|
|
|
|
<li>
|
|
|
|
|
<a href="cdm60.html">CDM v6.0</a>
|
|
|
|
|
</li>
|
|
|
|
|
<li>
|
|
|
|
|
<a href="cdm53.html">CDM v5.3</a>
|
|
|
|
|
</li>
|
|
|
|
|
<li class="dropdown-submenu">
|
2022-07-25 19:27:08 +00:00
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
2021-09-22 19:39:44 +00:00
|
|
|
<ul class="dropdown-menu" role="menu">
|
|
|
|
|
<li>
|
|
|
|
|
<a href="cdm54.html">CDM v5.4</a>
|
|
|
|
|
</li>
|
|
|
|
|
<li>
|
|
|
|
|
<a href="cdm54Changes.html">Changes from CDM v5.3</a>
|
|
|
|
|
</li>
|
2023-03-28 16:28:17 +00:00
|
|
|
<li>
|
|
|
|
|
<a href="cdm54erd.html">Entity Relationships</a>
|
|
|
|
|
</li>
|
2021-09-22 19:39:44 +00:00
|
|
|
</ul>
|
|
|
|
|
</li>
|
|
|
|
|
</ul>
|
|
|
|
|
</li>
|
|
|
|
|
<li class="dropdown">
|
2022-07-25 19:27:08 +00:00
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
2022-01-13 18:59:03 +00:00
|
|
|
<span class="fa fa-plus-square"></span>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
2022-07-25 19:27:08 +00:00
|
|
|
CDM Proposals
|
2021-09-22 19:39:44 +00:00
|
|
|
|
|
|
|
|
<span class="caret"></span>
|
|
|
|
|
</a>
|
|
|
|
|
<ul class="dropdown-menu" role="menu">
|
2022-07-25 19:27:08 +00:00
|
|
|
<li>
|
|
|
|
|
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
|
|
|
|
</li>
|
2021-09-22 19:39:44 +00:00
|
|
|
<li>
|
|
|
|
|
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
|
|
|
|
</li>
|
|
|
|
|
<li class="dropdown-submenu">
|
2022-07-25 19:27:08 +00:00
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
2021-09-22 19:39:44 +00:00
|
|
|
<ul class="dropdown-menu" role="menu">
|
|
|
|
|
<li>
|
|
|
|
|
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
|
|
|
|
</li>
|
|
|
|
|
</ul>
|
|
|
|
|
</li>
|
|
|
|
|
</ul>
|
|
|
|
|
</li>
|
|
|
|
|
<li class="dropdown">
|
2022-07-25 19:27:08 +00:00
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
2022-01-13 18:59:03 +00:00
|
|
|
<span class="fa fa-question"></span>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
|
|
|
|
How to
|
|
|
|
|
|
|
|
|
|
<span class="caret"></span>
|
|
|
|
|
</a>
|
|
|
|
|
<ul class="dropdown-menu" role="menu">
|
|
|
|
|
<li>
|
|
|
|
|
<a href="download.html">Download the DDL</a>
|
|
|
|
|
</li>
|
|
|
|
|
<li>
|
|
|
|
|
<a href="cdmRPackage.html">Use the CDM R Package</a>
|
|
|
|
|
</li>
|
|
|
|
|
<li>
|
|
|
|
|
<a href="drug_dose.html">Calculate Drug Dose</a>
|
|
|
|
|
</li>
|
|
|
|
|
</ul>
|
|
|
|
|
</li>
|
|
|
|
|
<li class="dropdown">
|
2022-07-25 19:27:08 +00:00
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
2022-01-13 18:59:03 +00:00
|
|
|
<span class="fa fa-life-ring"></span>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
|
|
|
|
Support
|
|
|
|
|
|
|
|
|
|
<span class="caret"></span>
|
|
|
|
|
</a>
|
|
|
|
|
<ul class="dropdown-menu" role="menu">
|
2022-07-25 19:27:08 +00:00
|
|
|
<li>
|
|
|
|
|
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
|
|
|
|
</li>
|
2021-09-22 19:39:44 +00:00
|
|
|
<li>
|
|
|
|
|
<a href="faq.html">FAQ</a>
|
|
|
|
|
</li>
|
|
|
|
|
<li>
|
|
|
|
|
<a href="sqlScripts.html">SQL Scripts</a>
|
|
|
|
|
</li>
|
|
|
|
|
<li>
|
|
|
|
|
<a href="contribute.html">Ask a Question</a>
|
|
|
|
|
</li>
|
|
|
|
|
</ul>
|
|
|
|
|
</li>
|
|
|
|
|
</ul>
|
|
|
|
|
<ul class="nav navbar-nav navbar-right">
|
|
|
|
|
<li>
|
|
|
|
|
<a href="https://github.com/OHDSI/CommonDataModel">
|
2022-01-13 18:59:03 +00:00
|
|
|
<span class="fa fa-github"></span>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
|
|
|
|
</a>
|
|
|
|
|
</li>
|
|
|
|
|
</ul>
|
|
|
|
|
</div><!--/.nav-collapse -->
|
|
|
|
|
</div><!--/.container -->
|
|
|
|
|
</div><!--/.navbar -->
|
|
|
|
|
|
2022-01-13 18:59:03 +00:00
|
|
|
<div id="header">
|
2021-09-22 19:39:44 +00:00
|
|
|
|
|
|
|
|
|
|
|
|
|
|
2023-02-08 20:04:22 +00:00
|
|
|
<h1 class="title toc-ignore"><img src="ohdsi40x40.png"></img> CDM
|
|
|
|
|
Refresh Process</h1>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
|
2023-02-08 20:04:22 +00:00
|
|
|
<p>The OMOP Common Data Model is managed by the OHDSI CDM Working Group.
|
|
|
|
|
The formal remit of the CDM Working Group (WG) is to hear proposals for
|
|
|
|
|
change, ratifying only those with valid use cases and data to support
|
|
|
|
|
them. Then, once ratified, these proposals are incorporated into the
|
|
|
|
|
next version of the CDM. In the past, this was done by the WG alone. The
|
|
|
|
|
group would invite others from around the community to present use cases
|
|
|
|
|
for change and suggestions for improvement. The WG would then vote on
|
|
|
|
|
the proposals and a new CDM version would be released after a certain
|
|
|
|
|
period of time or if enough proposals were voted in. This approach
|
|
|
|
|
worked when the community was smaller but as it is growing rapidly the
|
|
|
|
|
CDM WG needed to adapt the refresh cycle such that everyone has an
|
|
|
|
|
opportunity to weigh in on the proposed changes.</p>
|
|
|
|
|
<p>Looking to make a change or addition to the OMOP CDM? Please answer
|
|
|
|
|
the questions in the <a href="cdmDecisionTree.html">decision tree</a> to
|
|
|
|
|
point you in the right direction.</p>
|
2021-09-22 19:39:44 +00:00
|
|
|
<div id="cdm-refresh-cycle" class="section level2">
|
|
|
|
|
<h2>CDM Refresh Cycle</h2>
|
|
|
|
|
<p><img src="images/CDM_refresh_cycle.png" /></p>
|
2022-07-25 19:27:08 +00:00
|
|
|
<div id="define-new-version" class="section level3">
|
|
|
|
|
<h3>1. Define New Version</h3>
|
2023-02-08 20:04:22 +00:00
|
|
|
<p>The image above describes the new CDM refresh cycle. It begins with
|
|
|
|
|
<strong>defining a new version</strong>. Proposals are heard over the
|
|
|
|
|
course of a year according to the <a href="cdmRequestProcess.html">CDM
|
|
|
|
|
Request Process</a> and the ratified changes are added to the roadmap
|
|
|
|
|
until such time that there are enough updates to warrant a new version
|
|
|
|
|
of the model.</p>
|
|
|
|
|
<p>Looking to open a proposal to change or augment the CDM? Please
|
|
|
|
|
follow the questions in the <a href="cdmDecisionTree.html">decision
|
|
|
|
|
tree</a> to help you determine what you will need.</p>
|
2021-09-22 19:39:44 +00:00
|
|
|
</div>
|
2022-07-25 19:27:08 +00:00
|
|
|
<div id="sign-off-from-work-groups" class="section level3">
|
|
|
|
|
<h3>2. Sign off from Work Groups</h3>
|
2023-02-08 20:04:22 +00:00
|
|
|
<p>Each member of the CDM WG is a liaison for another workgroup in the
|
|
|
|
|
community. They are responsible for presenting the proposed changes to
|
|
|
|
|
the CDM and collecting the feedback. This has resulted in very helpful
|
|
|
|
|
suggestions from the EHR, Data Quality, Device, HADES, and ACHILLES
|
|
|
|
|
groups. This outreach has proven to be very effective and should result
|
|
|
|
|
in a very stable version.</p>
|
2021-09-22 19:39:44 +00:00
|
|
|
</div>
|
|
|
|
|
<div id="release-ddls" class="section level3">
|
|
|
|
|
<h3>3. Release DDLs</h3>
|
2023-02-08 20:04:22 +00:00
|
|
|
<p>After all changes and suggestions are agreed upon by the community
|
|
|
|
|
and work groups the next step is to generate the DDLs. For example, the
|
|
|
|
|
CDM WG hosted a hackathon on August 18-19, 2021. During this time the
|
|
|
|
|
group created an R package to automatically generate the DDLs and the
|
|
|
|
|
code to instantiate an empty CDM instance. Changes were made to v5.3 to
|
|
|
|
|
generate v5.4 and the repository was refactored.</p>
|
2021-09-22 19:39:44 +00:00
|
|
|
</div>
|
|
|
|
|
<div id="software-update" class="section level3">
|
|
|
|
|
<h3>4. Software Update</h3>
|
2023-02-08 20:04:22 +00:00
|
|
|
<p>There will be period of time once the DDLs are ready to allow the
|
|
|
|
|
software and methods developers to prepare for the official release of
|
|
|
|
|
the CDM. This is meant to serve as a buffer so that once the community
|
|
|
|
|
starts adopting the new model, the tools and methods will be ready to
|
|
|
|
|
support it.</p>
|
2021-09-22 19:39:44 +00:00
|
|
|
</div>
|
|
|
|
|
<div id="community-support" class="section level3">
|
|
|
|
|
<h3>5. Community Support</h3>
|
2023-02-08 20:04:22 +00:00
|
|
|
<p>This is the final stage of the CDM refresh cycle. Once the DDLs are
|
|
|
|
|
ready and the software and tools supports the new version, the CDM WG
|
|
|
|
|
will work to help the community convert their data to the new model.</p>
|
2021-09-22 19:39:44 +00:00
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
<div id="cdm-wg-meeting-information" class="section level1">
|
|
|
|
|
<h1>CDM WG Meeting Information</h1>
|
2023-02-08 20:04:22 +00:00
|
|
|
<p>The CDM working group meets the first and third Tuesday of the month.
|
|
|
|
|
See below for links to the meetings.</p>
|
|
|
|
|
<p><strong>Every first Tuesday of the month at 10am est</strong> <a
|
|
|
|
|
href="https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1601910741972?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%2281c21b6d-448d-4634-abbc-6b0962d1138a%22%7d">Teams
|
|
|
|
|
Meeting</a></p>
|
|
|
|
|
<p><strong>Every third Tuesday of the month at 1pm est</strong> <a
|
|
|
|
|
href="https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1611000164347?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%223c193b7f-c2ab-4bcf-b88c-f89a6b1fba38%22%7d">Teams
|
|
|
|
|
Meeting</a></p>
|
|
|
|
|
<p><strong>Note</strong> These were recently changed from a Skype
|
|
|
|
|
meeting to a Microsoft Teams meeting. If you do you have access to the
|
|
|
|
|
OHDSI Teams Tenet, please contact Clair Blacketer at <a
|
|
|
|
|
href="mailto:mblacke@its.jnj.com"
|
|
|
|
|
class="email">mblacke@its.jnj.com</a>.</p>
|
2021-09-22 19:39:44 +00:00
|
|
|
<div id="cdm-wg-important-links" class="section level3">
|
|
|
|
|
<h3>CDM WG Important Links</h3>
|
|
|
|
|
<ul>
|
2023-02-08 20:04:22 +00:00
|
|
|
<li><a
|
|
|
|
|
href="https://drive.google.com/open?id=1DaNKe6ivIAZPJeI31VJ-pzNB9wS9hDqu">Google
|
|
|
|
|
Drive Location</a></li>
|
|
|
|
|
<li><a
|
|
|
|
|
href="https://docs.google.com/document/d/1WgKePjrI_cGdqn2XQCe1JdGaTzdMqU4p5ihkMt8fcAc/edit?usp=sharing">Running
|
|
|
|
|
Agenda</a></li>
|
|
|
|
|
<li><a href="https://github.com/OHDSI/CommonDataModel">CDM
|
|
|
|
|
Github</a></li>
|
2021-09-22 19:39:44 +00:00
|
|
|
</ul>
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<script>
|
|
|
|
|
|
|
|
|
|
// add bootstrap table styles to pandoc tables
|
|
|
|
|
function bootstrapStylePandocTables() {
|
|
|
|
|
$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
|
|
|
|
|
}
|
|
|
|
|
$(document).ready(function () {
|
|
|
|
|
bootstrapStylePandocTables();
|
|
|
|
|
});
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
</script>
|
|
|
|
|
|
|
|
|
|
<!-- tabsets -->
|
|
|
|
|
|
|
|
|
|
<script>
|
|
|
|
|
$(document).ready(function () {
|
|
|
|
|
window.buildTabsets("TOC");
|
|
|
|
|
});
|
|
|
|
|
|
|
|
|
|
$(document).ready(function () {
|
|
|
|
|
$('.tabset-dropdown > .nav-tabs > li').click(function () {
|
2022-01-13 18:59:03 +00:00
|
|
|
$(this).parent().toggleClass('nav-tabs-open');
|
2021-09-22 19:39:44 +00:00
|
|
|
});
|
|
|
|
|
});
|
|
|
|
|
</script>
|
|
|
|
|
|
|
|
|
|
<!-- code folding -->
|
|
|
|
|
|
|
|
|
|
<script>
|
|
|
|
|
$(document).ready(function () {
|
|
|
|
|
|
2022-01-13 18:59:03 +00:00
|
|
|
// temporarily add toc-ignore selector to headers for the consistency with Pandoc
|
|
|
|
|
$('.unlisted.unnumbered').addClass('toc-ignore')
|
|
|
|
|
|
2021-09-22 19:39:44 +00:00
|
|
|
// move toc-ignore selectors from section div to header
|
|
|
|
|
$('div.section.toc-ignore')
|
|
|
|
|
.removeClass('toc-ignore')
|
|
|
|
|
.children('h1,h2,h3,h4,h5').addClass('toc-ignore');
|
|
|
|
|
|
|
|
|
|
// establish options
|
|
|
|
|
var options = {
|
|
|
|
|
selectors: "h1,h2,h3",
|
|
|
|
|
theme: "bootstrap3",
|
|
|
|
|
context: '.toc-content',
|
|
|
|
|
hashGenerator: function (text) {
|
|
|
|
|
return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_');
|
|
|
|
|
},
|
|
|
|
|
ignoreSelector: ".toc-ignore",
|
|
|
|
|
scrollTo: 0
|
|
|
|
|
};
|
|
|
|
|
options.showAndHide = true;
|
|
|
|
|
options.smoothScroll = true;
|
|
|
|
|
|
|
|
|
|
// tocify
|
|
|
|
|
var toc = $("#TOC").tocify(options).data("toc-tocify");
|
|
|
|
|
});
|
|
|
|
|
</script>
|
|
|
|
|
|
|
|
|
|
<!-- dynamically load mathjax for compatibility with self-contained -->
|
|
|
|
|
<script>
|
|
|
|
|
(function () {
|
|
|
|
|
var script = document.createElement("script");
|
|
|
|
|
script.type = "text/javascript";
|
|
|
|
|
script.src = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
|
|
|
|
|
document.getElementsByTagName("head")[0].appendChild(script);
|
|
|
|
|
})();
|
|
|
|
|
</script>
|
|
|
|
|
|
|
|
|
|
</body>
|
|
|
|
|
</html>
|
