906 lines
21 KiB
HTML
906 lines
21 KiB
HTML
|
<!DOCTYPE html>
|
||
|
|
|
||
|
|
<html>
|
||
|
|
|
||
|
|
<head>
|
||
|
|
|
||
|
|
<meta charset="utf-8" />
|
||
|
|
<meta name="generator" content="pandoc" />
|
||
|
|
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
<title>Changes by Table</title>
|
||
|
|
|
||
|
|
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||
|
|
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||
|
|
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||
|
|
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||
|
|
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
|
||
|
|
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
|
||
|
|
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
|
||
|
|
<style>h1 {font-size: 34px;}
|
||
|
|
h1.title {font-size: 38px;}
|
||
|
|
h2 {font-size: 30px;}
|
||
|
|
h3 {font-size: 24px;}
|
||
|
|
h4 {font-size: 18px;}
|
||
|
|
h5 {font-size: 16px;}
|
||
|
|
h6 {font-size: 12px;}
|
||
|
|
code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
|
||
|
|
pre:not([class]) { background-color: white }</style>
|
||
|
|
<script src="site_libs/jqueryui-1.11.4/jquery-ui.min.js"></script>
|
||
|
|
<link href="site_libs/tocify-1.9.1/jquery.tocify.css" rel="stylesheet" />
|
||
|
|
<script src="site_libs/tocify-1.9.1/jquery.tocify.js"></script>
|
||
|
|
<script src="site_libs/navigation-1.1/tabsets.js"></script>
|
||
|
|
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
|
||
|
|
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
|
||
|
|
<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
|
||
|
|
<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />
|
||
|
|
<link rel='shortcut icon' type='image/x-icon' href='favicon.ico' />
|
||
|
|
|
||
|
|
<style type="text/css">
|
||
|
|
code{white-space: pre-wrap;}
|
||
|
|
span.smallcaps{font-variant: small-caps;}
|
||
|
|
span.underline{text-decoration: underline;}
|
||
|
|
div.column{display: inline-block; vertical-align: top; width: 50%;}
|
||
|
|
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
|
||
|
|
ul.task-list{list-style: none;}
|
||
|
|
</style>
|
||
|
|
|
||
|
|
<style type="text/css">code{white-space: pre;}</style>
|
||
|
|
<script type="text/javascript">
|
||
|
|
if (window.hljs) {
|
||
|
|
hljs.configure({languages: []});
|
||
|
|
hljs.initHighlightingOnLoad();
|
||
|
|
if (document.readyState && document.readyState === "complete") {
|
||
|
|
window.setTimeout(function() { hljs.initHighlighting(); }, 0);
|
||
|
|
}
|
||
|
|
}
|
||
|
|
</script>
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
<link rel="stylesheet" href="style.css" type="text/css" />
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
<style type = "text/css">
|
||
|
|
.main-container {
|
||
|
|
max-width: 940px;
|
||
|
|
margin-left: auto;
|
||
|
|
margin-right: auto;
|
||
|
|
}
|
||
|
|
img {
|
||
|
|
max-width:100%;
|
||
|
|
}
|
||
|
|
.tabbed-pane {
|
||
|
|
padding-top: 12px;
|
||
|
|
}
|
||
|
|
.html-widget {
|
||
|
|
margin-bottom: 20px;
|
||
|
|
}
|
||
|
|
button.code-folding-btn:focus {
|
||
|
|
outline: none;
|
||
|
|
}
|
||
|
|
summary {
|
||
|
|
display: list-item;
|
||
|
|
}
|
||
|
|
details > summary > p:only-child {
|
||
|
|
display: inline;
|
||
|
|
}
|
||
|
|
pre code {
|
||
|
|
padding: 0;
|
||
|
|
}
|
||
|
|
</style>
|
||
|
|
|
||
|
|
|
||
|
|
<style type="text/css">
|
||
|
|
.dropdown-submenu {
|
||
|
|
position: relative;
|
||
|
|
}
|
||
|
|
.dropdown-submenu>.dropdown-menu {
|
||
|
|
top: 0;
|
||
|
|
left: 100%;
|
||
|
|
margin-top: -6px;
|
||
|
|
margin-left: -1px;
|
||
|
|
border-radius: 0 6px 6px 6px;
|
||
|
|
}
|
||
|
|
.dropdown-submenu:hover>.dropdown-menu {
|
||
|
|
display: block;
|
||
|
|
}
|
||
|
|
.dropdown-submenu>a:after {
|
||
|
|
display: block;
|
||
|
|
content: " ";
|
||
|
|
float: right;
|
||
|
|
width: 0;
|
||
|
|
height: 0;
|
||
|
|
border-color: transparent;
|
||
|
|
border-style: solid;
|
||
|
|
border-width: 5px 0 5px 5px;
|
||
|
|
border-left-color: #cccccc;
|
||
|
|
margin-top: 5px;
|
||
|
|
margin-right: -10px;
|
||
|
|
}
|
||
|
|
.dropdown-submenu:hover>a:after {
|
||
|
|
border-left-color: #adb5bd;
|
||
|
|
}
|
||
|
|
.dropdown-submenu.pull-left {
|
||
|
|
float: none;
|
||
|
|
}
|
||
|
|
.dropdown-submenu.pull-left>.dropdown-menu {
|
||
|
|
left: -100%;
|
||
|
|
margin-left: 10px;
|
||
|
|
border-radius: 6px 0 6px 6px;
|
||
|
|
}
|
||
|
|
</style>
|
||
|
|
|
||
|
|
<script type="text/javascript">
|
||
|
|
// manage active state of menu based on current page
|
||
|
|
$(document).ready(function () {
|
||
|
|
// active menu anchor
|
||
|
|
href = window.location.pathname
|
||
|
|
href = href.substr(href.lastIndexOf('/') + 1)
|
||
|
|
if (href === "")
|
||
|
|
href = "index.html";
|
||
|
|
var menuAnchor = $('a[href="' + href + '"]');
|
||
|
|
|
||
|
|
// mark it active
|
||
|
|
menuAnchor.tab('show');
|
||
|
|
|
||
|
|
// if it's got a parent navbar menu mark it active as well
|
||
|
|
menuAnchor.closest('li.dropdown').addClass('active');
|
||
|
|
|
||
|
|
// Navbar adjustments
|
||
|
|
var navHeight = $(".navbar").first().height() + 15;
|
||
|
|
var style = document.createElement('style');
|
||
|
|
var pt = "padding-top: " + navHeight + "px; ";
|
||
|
|
var mt = "margin-top: -" + navHeight + "px; ";
|
||
|
|
var css = "";
|
||
|
|
// offset scroll position for anchor links (for fixed navbar)
|
||
|
|
for (var i = 1; i <= 6; i++) {
|
||
|
|
css += ".section h" + i + "{ " + pt + mt + "}\n";
|
||
|
|
}
|
||
|
|
style.innerHTML = "body {" + pt + "padding-bottom: 40px; }\n" + css;
|
||
|
|
document.head.appendChild(style);
|
||
|
|
});
|
||
|
|
</script>
|
||
|
|
|
||
|
|
<!-- tabsets -->
|
||
|
|
|
||
|
|
<style type="text/css">
|
||
|
|
.tabset-dropdown > .nav-tabs {
|
||
|
|
display: inline-table;
|
||
|
|
max-height: 500px;
|
||
|
|
min-height: 44px;
|
||
|
|
overflow-y: auto;
|
||
|
|
border: 1px solid #ddd;
|
||
|
|
border-radius: 4px;
|
||
|
|
}
|
||
|
|
|
||
|
|
.tabset-dropdown > .nav-tabs > li.active:before {
|
||
|
|
content: "";
|
||
|
|
font-family: 'Glyphicons Halflings';
|
||
|
|
display: inline-block;
|
||
|
|
padding: 10px;
|
||
|
|
border-right: 1px solid #ddd;
|
||
|
|
}
|
||
|
|
|
||
|
|
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
|
||
|
|
content: "";
|
||
|
|
border: none;
|
||
|
|
}
|
||
|
|
|
||
|
|
.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
|
||
|
|
content: "";
|
||
|
|
font-family: 'Glyphicons Halflings';
|
||
|
|
display: inline-block;
|
||
|
|
padding: 10px;
|
||
|
|
border-right: 1px solid #ddd;
|
||
|
|
}
|
||
|
|
|
||
|
|
.tabset-dropdown > .nav-tabs > li.active {
|
||
|
|
display: block;
|
||
|
|
}
|
||
|
|
|
||
|
|
.tabset-dropdown > .nav-tabs > li > a,
|
||
|
|
.tabset-dropdown > .nav-tabs > li > a:focus,
|
||
|
|
.tabset-dropdown > .nav-tabs > li > a:hover {
|
||
|
|
border: none;
|
||
|
|
display: inline-block;
|
||
|
|
border-radius: 4px;
|
||
|
|
background-color: transparent;
|
||
|
|
}
|
||
|
|
|
||
|
|
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
|
||
|
|
display: block;
|
||
|
|
float: none;
|
||
|
|
}
|
||
|
|
|
||
|
|
.tabset-dropdown > .nav-tabs > li {
|
||
|
|
display: none;
|
||
|
|
}
|
||
|
|
</style>
|
||
|
|
|
||
|
|
<!-- code folding -->
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
<style type="text/css">
|
||
|
|
|
||
|
|
#TOC {
|
||
|
|
margin: 25px 0px 20px 0px;
|
||
|
|
}
|
||
|
|
@media (max-width: 768px) {
|
||
|
|
#TOC {
|
||
|
|
position: relative;
|
||
|
|
width: 100%;
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
@media print {
|
||
|
|
.toc-content {
|
||
|
|
/* see https://github.com/w3c/csswg-drafts/issues/4434 */
|
||
|
|
float: right;
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
.toc-content {
|
||
|
|
padding-left: 30px;
|
||
|
|
padding-right: 40px;
|
||
|
|
}
|
||
|
|
|
||
|
|
div.main-container {
|
||
|
|
max-width: 1200px;
|
||
|
|
}
|
||
|
|
|
||
|
|
div.tocify {
|
||
|
|
width: 20%;
|
||
|
|
max-width: 260px;
|
||
|
|
max-height: 85%;
|
||
|
|
}
|
||
|
|
|
||
|
|
@media (min-width: 768px) and (max-width: 991px) {
|
||
|
|
div.tocify {
|
||
|
|
width: 25%;
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
@media (max-width: 767px) {
|
||
|
|
div.tocify {
|
||
|
|
width: 100%;
|
||
|
|
max-width: none;
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
.tocify ul, .tocify li {
|
||
|
|
line-height: 20px;
|
||
|
|
}
|
||
|
|
|
||
|
|
.tocify-subheader .tocify-item {
|
||
|
|
font-size: 0.90em;
|
||
|
|
}
|
||
|
|
|
||
|
|
.tocify .list-group-item {
|
||
|
|
border-radius: 0px;
|
||
|
|
}
|
||
|
|
|
||
|
|
|
||
|
|
</style>
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
</head>
|
||
|
|
|
||
|
|
<body>
|
||
|
|
|
||
|
|
|
||
|
|
<div class="container-fluid main-container">
|
||
|
|
|
||
|
|
|
||
|
|
<!-- setup 3col/9col grid for toc_float and main content -->
|
||
|
|
<div class="row">
|
||
|
|
<div class="col-xs-12 col-sm-4 col-md-3">
|
||
|
|
<div id="TOC" class="tocify">
|
||
|
|
</div>
|
||
|
|
</div>
|
||
|
|
|
||
|
|
<div class="toc-content col-xs-12 col-sm-8 col-md-9">
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||
|
|
<div class="container">
|
||
|
|
<div class="navbar-header">
|
||
|
|
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||
|
|
<span class="icon-bar"></span>
|
||
|
|
<span class="icon-bar"></span>
|
||
|
|
<span class="icon-bar"></span>
|
||
|
|
</button>
|
||
|
|
<a class="navbar-brand" href="index.html"><div><img src="ohdsi16x16.png"></img> OMOP Common Data Model </div></a>
|
||
|
|
</div>
|
||
|
|
<div id="navbar" class="navbar-collapse collapse">
|
||
|
|
<ul class="nav navbar-nav">
|
||
|
|
<li>
|
||
|
|
<a href="index.html">
|
||
|
|
<span class="fa fa-home"></span>
|
||
|
|
|
||
|
|
</a>
|
||
|
|
</li>
|
||
|
|
<li class="dropdown">
|
||
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||
|
|
<span class="fa fa-landmark"></span>
|
||
|
|
|
||
|
|
Background
|
||
|
|
|
||
|
|
<span class="caret"></span>
|
||
|
|
</a>
|
||
|
|
<ul class="dropdown-menu" role="menu">
|
||
|
|
<li>
|
||
|
|
<a href="background.html">Model Background</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="cdmRefreshProcess.html">CDM Refresh Process</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="vocabulary.html">How the Vocabulary is Built</a>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</li>
|
||
|
|
<li class="dropdown">
|
||
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||
|
|
<span class="fa fa-list-alt"></span>
|
||
|
|
|
||
|
|
Conventions
|
||
|
|
|
||
|
|
<span class="caret"></span>
|
||
|
|
</a>
|
||
|
|
<ul class="dropdown-menu" role="menu">
|
||
|
|
<li>
|
||
|
|
<a href="dataModelConventions.html">General Conventions</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="ehrObsPeriods.html">Observation Periods for EHR Data</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="cdmPrivacy.html">Patient Privacy and OMOP</a>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</li>
|
||
|
|
<li class="dropdown">
|
||
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||
|
|
<span class="fa fa-history"></span>
|
||
|
|
|
||
|
|
CDM Versions
|
||
|
|
|
||
|
|
<span class="caret"></span>
|
||
|
|
</a>
|
||
|
|
<ul class="dropdown-menu" role="menu">
|
||
|
|
<li>
|
||
|
|
<a href="cdm30.html">CDM v3.0</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="cdm60.html">CDM v6.0</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="cdm53.html">CDM v5.3</a>
|
||
|
|
</li>
|
||
|
|
<li class="dropdown-submenu">
|
||
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||
|
|
<ul class="dropdown-menu" role="menu">
|
||
|
|
<li>
|
||
|
|
<a href="cdm54.html">CDM v5.4</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="cdm54Changes.html">Changes from CDM v5.3</a>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</li>
|
||
|
|
<li class="dropdown">
|
||
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||
|
|
<span class="fa fa-plus-square"></span>
|
||
|
|
|
||
|
|
Proposals
|
||
|
|
|
||
|
|
<span class="caret"></span>
|
||
|
|
</a>
|
||
|
|
<ul class="dropdown-menu" role="menu">
|
||
|
|
<li>
|
||
|
|
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||
|
|
</li>
|
||
|
|
<li class="dropdown-submenu">
|
||
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||
|
|
<ul class="dropdown-menu" role="menu">
|
||
|
|
<li>
|
||
|
|
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</li>
|
||
|
|
<li class="dropdown">
|
||
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||
|
|
<span class="fa fa-question"></span>
|
||
|
|
|
||
|
|
How to
|
||
|
|
|
||
|
|
<span class="caret"></span>
|
||
|
|
</a>
|
||
|
|
<ul class="dropdown-menu" role="menu">
|
||
|
|
<li>
|
||
|
|
<a href="download.html">Download the DDL</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="cdmRPackage.html">Use the CDM R Package</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="drug_dose.html">Calculate Drug Dose</a>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</li>
|
||
|
|
<li class="dropdown">
|
||
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||
|
|
<span class="fa fa-life-ring"></span>
|
||
|
|
|
||
|
|
Support
|
||
|
|
|
||
|
|
<span class="caret"></span>
|
||
|
|
</a>
|
||
|
|
<ul class="dropdown-menu" role="menu">
|
||
|
|
<li>
|
||
|
|
<a href="faq.html">FAQ</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="sqlScripts.html">SQL Scripts</a>
|
||
|
|
</li>
|
||
|
|
<li>
|
||
|
|
<a href="contribute.html">Ask a Question</a>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
<ul class="nav navbar-nav navbar-right">
|
||
|
|
<li>
|
||
|
|
<a href="https://github.com/OHDSI/CommonDataModel">
|
||
|
|
<span class="fa fa-github"></span>
|
||
|
|
|
||
|
|
</a>
|
||
|
|
</li>
|
||
|
|
</ul>
|
||
|
|
</div><!--/.nav-collapse -->
|
||
|
|
</div><!--/.container -->
|
||
|
|
</div><!--/.navbar -->
|
||
|
|
|
||
|
|
<div id="header">
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
<h1 class="title toc-ignore"><strong>Changes by Table</strong></h1>
|
||
|
|
|
||
|
|
</div>
|
||
|
|
|
||
|
|
|
||
|
|
<p><em>from CDM v5.3 -> CDM v5.4</em></p>
|
||
|
|
<p>For a full description of each table and field listed here, please see the <a href="http://ohdsi.github.io/CommonDataModel/cdm54.html">CDM specification</a>.</p>
|
||
|
|
<p>Notation:</p>
|
||
|
|
<ul>
|
||
|
|
<li>a <strong>+</strong> indicates an addition to the model, either a table or field</li>
|
||
|
|
<li>a <strong>-></strong> indicates an alteration either in naming or specification</li>
|
||
|
|
<li>a <strong>-</strong> indicates a subtraction from the model, either a table or field</li>
|
||
|
|
</ul>
|
||
|
|
<div id="person" class="section level2">
|
||
|
|
<h2>PERSON</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="observation_period" class="section level2">
|
||
|
|
<h2>OBSERVATION_PERIOD</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="visit_occurrence" class="section level2">
|
||
|
|
<h2>VISIT_OCCURRENCE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>Admitting_source_concept_id -> <strong>Admitted_from_concept_id</strong></li>
|
||
|
|
<li>Admitting_source_value -> <strong>Admitted_from_source_value</strong></li>
|
||
|
|
<li>Discharge_to_concept_id -> <strong>Discharged_to_concept_id</strong></li>
|
||
|
|
<li>Discharge_to_source_value -> <strong>Discharged_to_source_value</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="visit_detail" class="section level2">
|
||
|
|
<h2>VISIT_DETAIL</h2>
|
||
|
|
<ul>
|
||
|
|
<li>Admitting_source_concept_id -> <strong>Admitted_from_concept_id</strong></li>
|
||
|
|
<li>Admitting_source_value -> <strong>Admitted_from_source_value</strong></li>
|
||
|
|
<li>Discharge_to_concept_id -> <strong>Discharged_to_concept_id</strong></li>
|
||
|
|
<li>Discharge_to_source_value -> <strong>Discharged_to_source_value</strong></li>
|
||
|
|
<li>Visit_detail_parent_id -> <strong>Parent_visit_detail_id</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="condition_occurrence" class="section level2">
|
||
|
|
<h2>CONDITION_OCCURRENCE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="drug_exposure" class="section level2">
|
||
|
|
<h2>DRUG_EXPOSURE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="procedure_occurrence" class="section level2">
|
||
|
|
<h2>PROCEDURE_OCCURRENCE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>+ <strong>Procedure_end_date</strong></li>
|
||
|
|
<li>+ <strong>Procedure_end_datetime</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="device_exposure" class="section level2">
|
||
|
|
<h2>DEVICE_EXPOSURE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>Unique_device_id -> <strong>Changed to varchar(255)</strong></li>
|
||
|
|
<li>+ <strong>Production_id</strong></li>
|
||
|
|
<li>+ <strong>Unit_concept_id</strong></li>
|
||
|
|
<li>+ <strong>Unit_source_value</strong></li>
|
||
|
|
<li>+ <strong>Unit_source_concept_id</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="measurement" class="section level2">
|
||
|
|
<h2>MEASUREMENT</h2>
|
||
|
|
<ul>
|
||
|
|
<li>+ <strong>Unit_source_concept_id</strong></li>
|
||
|
|
<li>+ <strong>Measurement_event_id</strong></li>
|
||
|
|
<li>+ <strong>Meas_event_field_concept_id</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="observation" class="section level2">
|
||
|
|
<h2>OBSERVATION</h2>
|
||
|
|
<ul>
|
||
|
|
<li>+ <strong>Value_source_value</strong></li>
|
||
|
|
<li>+ <strong>Observation_event_id</strong></li>
|
||
|
|
<li>+ <strong>Obs_event_field_concept_id</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="death" class="section level2">
|
||
|
|
<h2>DEATH</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="note" class="section level2">
|
||
|
|
<h2>NOTE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>+ <strong>Note_event_id</strong></li>
|
||
|
|
<li>+ <strong>Note_event_field_concept_id</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="note_nlp" class="section level2">
|
||
|
|
<h2>NOTE_NLP</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="specimen" class="section level2">
|
||
|
|
<h2>SPECIMEN</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="fact_relationship" class="section level2">
|
||
|
|
<h2>FACT_RELATIONSHIP</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="location" class="section level2">
|
||
|
|
<h2>LOCATION</h2>
|
||
|
|
<ul>
|
||
|
|
<li>+ <strong>Country_concept_id</strong></li>
|
||
|
|
<li>+ <strong>Country_source_value</strong></li>
|
||
|
|
<li>+ <strong>Latitude</strong></li>
|
||
|
|
<li>+ <strong>Longitude</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="care_site" class="section level2">
|
||
|
|
<h2>CARE_SITE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="payer_plan_period" class="section level2">
|
||
|
|
<h2>PAYER_PLAN_PERIOD</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="cost" class="section level2">
|
||
|
|
<h2>COST</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="drug_era" class="section level2">
|
||
|
|
<h2>DRUG_ERA</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="dose_era" class="section level2">
|
||
|
|
<h2>DOSE_ERA</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="condition_era" class="section level2">
|
||
|
|
<h2>CONDITION_ERA</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="episode" class="section level2">
|
||
|
|
<h2>+ <strong>EPISODE</strong></h2>
|
||
|
|
<table>
|
||
|
|
<thead>
|
||
|
|
<tr class="header">
|
||
|
|
<th>EPISODE</th>
|
||
|
|
</tr>
|
||
|
|
</thead>
|
||
|
|
<tbody>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>person_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_concept_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>episode_start_date</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_start_datetime</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>episode_end_date</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_end_datetime</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>episode_parent_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_number</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>episode_object_concept_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_type_concept_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>episode_source_value</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_source_concept_id</td>
|
||
|
|
</tr>
|
||
|
|
</tbody>
|
||
|
|
</table>
|
||
|
|
</div>
|
||
|
|
<div id="episode_event" class="section level2">
|
||
|
|
<h2>+ <strong>EPISODE_EVENT</strong></h2>
|
||
|
|
<table>
|
||
|
|
<thead>
|
||
|
|
<tr class="header">
|
||
|
|
<th>EPISODE_EVENT</th>
|
||
|
|
</tr>
|
||
|
|
</thead>
|
||
|
|
<tbody>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>event_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>episode_event_field_concept_id</td>
|
||
|
|
</tr>
|
||
|
|
</tbody>
|
||
|
|
</table>
|
||
|
|
</div>
|
||
|
|
<div id="metadata" class="section level2">
|
||
|
|
<h2>METADATA</h2>
|
||
|
|
<ul>
|
||
|
|
<li>+ <strong>Metadata_id</strong></li>
|
||
|
|
<li>+ <strong>Value_as_number</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="cdm_source" class="section level2">
|
||
|
|
<h2>CDM_SOURCE</h2>
|
||
|
|
<ul>
|
||
|
|
<li>Cdm_source_name -> <strong>Mandatory field</strong></li>
|
||
|
|
<li>Cdm_source_abbreviation -> <strong>Mandatory field</strong></li>
|
||
|
|
<li>Cdm_holder -> <strong>Mandatory field</strong></li>
|
||
|
|
<li>Source_release_date -> <strong>Mandatory field</strong></li>
|
||
|
|
<li>Cdm_release_date -> <strong>Mandatory field</strong></li>
|
||
|
|
<li>+ <strong>Cdm_version_concept_id</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="concept" class="section level2">
|
||
|
|
<h2>CONCEPT</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="vocabulary" class="section level2">
|
||
|
|
<h2>VOCABULARY</h2>
|
||
|
|
<ul>
|
||
|
|
<li>Vocabulary_reference -> <strong>Non-mandatory field</strong></li>
|
||
|
|
<li>Vocabulary_version -> <strong>Non-mandatory field</strong></li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="domain" class="section level2">
|
||
|
|
<h2>DOMAIN</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="concept_class" class="section level2">
|
||
|
|
<h2>CONCEPT_CLASS</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="concept_relationship" class="section level2">
|
||
|
|
<h2>CONCEPT_RELATIONSHIP</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="relationship" class="section level2">
|
||
|
|
<h2>RELATIONSHIP</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="concept_synonym" class="section level2">
|
||
|
|
<h2>CONCEPT_SYNONYM</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="concept_ancestor" class="section level2">
|
||
|
|
<h2>CONCEPT_ANCESTOR</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="source_to_concept_map" class="section level2">
|
||
|
|
<h2>SOURCE_TO_CONCEPT_MAP</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="drug_strength" class="section level2">
|
||
|
|
<h2>DRUG_STRENGTH</h2>
|
||
|
|
<ul>
|
||
|
|
<li>No change</li>
|
||
|
|
</ul>
|
||
|
|
</div>
|
||
|
|
<div id="attribute_definition" class="section level2">
|
||
|
|
<h2>- <strong>ATTRIBUTE_DEFINITION</strong></h2>
|
||
|
|
</div>
|
||
|
|
<div id="cohort" class="section level2">
|
||
|
|
<h2>+ <strong>COHORT</strong></h2>
|
||
|
|
<table>
|
||
|
|
<thead>
|
||
|
|
<tr class="header">
|
||
|
|
<th>COHORT</th>
|
||
|
|
</tr>
|
||
|
|
</thead>
|
||
|
|
<tbody>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>cohort_definition_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>subject_id</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="odd">
|
||
|
|
<td>cohort_start_date</td>
|
||
|
|
</tr>
|
||
|
|
<tr class="even">
|
||
|
|
<td>cohort_end_date</td>
|
||
|
|
</tr>
|
||
|
|
</tbody>
|
||
|
|
</table>
|
||
|
|
</div>
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
</div>
|
||
|
|
</div>
|
||
|
|
|
||
|
|
</div>
|
||
|
|
|
||
|
|
<script>
|
||
|
|
|
||
|
|
// add bootstrap table styles to pandoc tables
|
||
|
|
function bootstrapStylePandocTables() {
|
||
|
|
$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
|
||
|
|
}
|
||
|
|
$(document).ready(function () {
|
||
|
|
bootstrapStylePandocTables();
|
||
|
|
});
|
||
|
|
|
||
|
|
|
||
|
|
</script>
|
||
|
|
|
||
|
|
<!-- tabsets -->
|
||
|
|
|
||
|
|
<script>
|
||
|
|
$(document).ready(function () {
|
||
|
|
window.buildTabsets("TOC");
|
||
|
|
});
|
||
|
|
|
||
|
|
$(document).ready(function () {
|
||
|
|
$('.tabset-dropdown > .nav-tabs > li').click(function () {
|
||
|
|
$(this).parent().toggleClass('nav-tabs-open');
|
||
|
|
});
|
||
|
|
});
|
||
|
|
</script>
|
||
|
|
|
||
|
|
<!-- code folding -->
|
||
|
|
|
||
|
|
<script>
|
||
|
|
$(document).ready(function () {
|
||
|
|
|
||
|
|
// temporarily add toc-ignore selector to headers for the consistency with Pandoc
|
||
|
|
$('.unlisted.unnumbered').addClass('toc-ignore')
|
||
|
|
|
||
|
|
// move toc-ignore selectors from section div to header
|
||
|
|
$('div.section.toc-ignore')
|
||
|
|
.removeClass('toc-ignore')
|
||
|
|
.children('h1,h2,h3,h4,h5').addClass('toc-ignore');
|
||
|
|
|
||
|
|
// establish options
|
||
|
|
var options = {
|
||
|
|
selectors: "h1,h2,h3",
|
||
|
|
theme: "bootstrap3",
|
||
|
|
context: '.toc-content',
|
||
|
|
hashGenerator: function (text) {
|
||
|
|
return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_');
|
||
|
|
},
|
||
|
|
ignoreSelector: ".toc-ignore",
|
||
|
|
scrollTo: 0
|
||
|
|
};
|
||
|
|
options.showAndHide = true;
|
||
|
|
options.smoothScroll = true;
|
||
|
|
|
||
|
|
// tocify
|
||
|
|
var toc = $("#TOC").tocify(options).data("toc-tocify");
|
||
|
|
});
|
||
|
|
</script>
|
||
|
|
|
||
|
|
<!-- dynamically load mathjax for compatibility with self-contained -->
|
||
|
|
<script>
|
||
|
|
(function () {
|
||
|
|
var script = document.createElement("script");
|
||
|
|
script.type = "text/javascript";
|
||
|
|
script.src = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
|
||
|
|
document.getElementsByTagName("head")[0].appendChild(script);
|
||
|
|
})();
|
||
|
|
</script>
|
||
|
|
|
||
|
|
</body>
|
||
|
|
</html>
|