OMOP/output/bigquery/OMOP CDM bigquery v5_3_1 ddl.sql

--bigquery CDM DDL Specification for OMOP Common Data Model v5_3_1 

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.person (
 
			person_id INT64 not null, 
			gender_concept_id INT64 not null, 
			year_of_birth INT64 not null, 
			month_of_birth INT64, 
			day_of_birth INT64, 
			birth_datetime datetime null, 
			race_concept_id INT64 not null, 
			ethnicity_concept_id INT64 not null, 
			location_id INT64, 
			provider_id INT64, 
			care_site_id INT64, 
			person_source_value STRING, 
			gender_source_value STRING, 
			gender_source_concept_id INT64, 
			race_source_value STRING, 
			race_source_concept_id INT64, 
			ethnicity_source_value STRING, 
			ethnicity_source_concept_id INT64 );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.observation_period (
 
			observation_period_id INT64 not null, 
			person_id INT64 not null, 
			observation_period_start_date date not null, 
			observation_period_end_date date not null, 
			period_type_concept_id INT64 not null );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.visit_occurrence (
 
			visit_occurrence_id INT64 not null, 
			person_id INT64 not null, 
			visit_concept_id INT64 not null, 
			visit_start_date date not null, 
			visit_start_datetime datetime null, 
			visit_end_date date not null, 
			visit_end_datetime datetime null, 
			visit_type_concept_id INT64 not null, 
			provider_id INT64, 
			care_site_id INT64, 
			visit_source_value STRING, 
			visit_source_concept_id INT64, 
			admitting_source_concept_id INT64, 
			admitting_source_value STRING, 
			discharge_to_concept_id INT64, 
			discharge_to_source_value STRING, 
			preceding_visit_occurrence_id INT64 );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.visit_detail (
 
			visit_detail_id INT64 not null, 
			person_id INT64 not null, 
			visit_detail_concept_id INT64 not null, 
			visit_detail_start_date date not null, 
			visit_detail_start_datetime datetime null, 
			visit_detail_end_date date not null, 
			visit_detail_end_datetime datetime null, 
			visit_detail_type_concept_id INT64 not null, 
			provider_id INT64, 
			care_site_id INT64, 
			visit_detail_source_value STRING, 
			visit_detail_source_concept_id INT64, 
			admitting_source_value STRING, 
			admitting_source_concept_id INT64, 
			discharge_to_source_value STRING, 
			discharge_to_concept_id INT64, 
			preceding_visit_detail_id INT64, 
			visit_detail_parent_id INT64, 
			visit_occurrence_id INT64 not null );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.condition_occurrence (
 
			condition_occurrence_id INT64 not null, 
			person_id INT64 not null, 
			condition_concept_id INT64 not null, 
			condition_start_date date not null, 
			condition_start_datetime datetime null, 
			condition_end_date date null, 
			condition_end_datetime datetime null, 
			condition_type_concept_id INT64 not null, 
			condition_status_concept_id INT64, 
			stop_reason STRING, 
			provider_id INT64, 
			visit_occurrence_id INT64, 
			visit_detail_id INT64, 
			condition_source_value STRING, 
			condition_source_concept_id INT64, 
			condition_status_source_value STRING );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.drug_exposure (
 
			drug_exposure_id INT64 not null, 
			person_id INT64 not null, 
			drug_concept_id INT64 not null, 
			drug_exposure_start_date date not null, 
			drug_exposure_start_datetime datetime null, 
			drug_exposure_end_date date not null, 
			drug_exposure_end_datetime datetime null, 
			verbatim_end_date date null, 
			drug_type_concept_id INT64 not null, 
			stop_reason STRING, 
			refills INT64, 
			quantity FLOAT64 null, 
			days_supply INT64, 
			sig STRING, 
			route_concept_id INT64, 
			lot_number STRING, 
			provider_id INT64, 
			visit_occurrence_id INT64, 
			visit_detail_id INT64, 
			drug_source_value STRING, 
			drug_source_concept_id INT64, 
			route_source_value STRING, 
			dose_unit_source_value STRING );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.procedure_occurrence (
 
			procedure_occurrence_id INT64 not null, 
			person_id INT64 not null, 
			procedure_concept_id INT64 not null, 
			procedure_date date not null, 
			procedure_datetime datetime null, 
			procedure_type_concept_id INT64 not null, 
			modifier_concept_id INT64, 
			quantity INT64, 
			provider_id INT64, 
			visit_occurrence_id INT64, 
			visit_detail_id INT64, 
			procedure_source_value STRING, 
			procedure_source_concept_id INT64, 
			modifier_source_value STRING );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.device_exposure (
 
			device_exposure_id INT64 not null, 
			person_id INT64 not null, 
			device_concept_id INT64 not null, 
			device_exposure_start_date date not null, 
			device_exposure_start_datetime datetime null, 
			device_exposure_end_date date null, 
			device_exposure_end_datetime datetime null, 
			device_type_concept_id INT64 not null, 
			unique_device_id STRING, 
			quantity INT64, 
			provider_id INT64, 
			visit_occurrence_id INT64, 
			visit_detail_id INT64, 
			device_source_value STRING, 
			device_source_concept_id INT64 );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.measurement (
 
			measurement_id INT64 not null, 
			person_id INT64 not null, 
			measurement_concept_id INT64 not null, 
			measurement_date date not null, 
			measurement_datetime datetime null, 
			measurement_time STRING, 
			measurement_type_concept_id INT64 not null, 
			operator_concept_id INT64, 
			value_as_number FLOAT64 null, 
			value_as_concept_id INT64, 
			unit_concept_id INT64, 
			range_low FLOAT64 null, 
			range_high FLOAT64 null, 
			provider_id INT64, 
			visit_occurrence_id INT64, 
			visit_detail_id INT64, 
			measurement_source_value STRING, 
			measurement_source_concept_id INT64, 
			unit_source_value STRING, 
			value_source_value STRING );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.observation (
 
			observation_id INT64 not null, 
			person_id INT64 not null, 
			observation_concept_id INT64 not null, 
			observation_date date not null, 
			observation_datetime datetime null, 
			observation_type_concept_id INT64 not null, 
			value_as_number FLOAT64 null, 
			value_as_string STRING, 
			value_as_concept_id INT64, 
			qualifier_concept_id INT64, 
			unit_concept_id INT64, 
			provider_id INT64, 
			visit_occurrence_id INT64, 
			visit_detail_id INT64, 
			observation_source_value STRING, 
			observation_source_concept_id INT64, 
			unit_source_value STRING, 
			qualifier_source_value STRING );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.death (
 
			person_id INT64, 
			death_date date null, 
			death_datetime datetime null, 
			death_type_concept_id INT64, 
			cause_concept_id INT64, 
			cause_source_value STRING, 
			cause_source_concept_id INT64 );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.note (
 
			note_id INT64 not null, 
			person_id INT64 not null, 
			note_date date not null, 
			note_datetime datetime null, 
			note_type_concept_id INT64 not null, 
			note_class_concept_id INT64 not null, 
			note_title STRING, 
			note_text STRING not null, 
			encoding_concept_id INT64 not null, 
			language_concept_id INT64 not null, 
			provider_id INT64, 
			visit_occurrence_id INT64, 
			visit_detail_id INT64, 
			note_source_value STRING );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.note_nlp (
 
			note_nlp_id INT64 not null, 
			note_id INT64 not null, 
			section_concept_id INT64, 
			snippet STRING, 
			"offset" STRING, 
			lexical_variant STRING not null, 
			note_nlp_concept_id INT64, 
			note_nlp_source_concept_id INT64, 
			nlp_system STRING, 
			nlp_date date not null, 
			nlp_datetime datetime null, 
			term_exists STRING, 
			term_temporal STRING, 
			term_modifiers STRING );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.specimen (
 
			specimen_id INT64 not null, 
			person_id INT64 not null, 
			specimen_concept_id INT64 not null, 
			specimen_type_concept_id INT64 not null, 
			specimen_date date not null, 
			specimen_datetime datetime null, 
			quantity FLOAT64 null, 
			unit_concept_id INT64, 
			anatomic_site_concept_id INT64, 
			disease_status_concept_id INT64, 
			specimen_source_id STRING, 
			specimen_source_value STRING, 
			unit_source_value STRING, 
			anatomic_site_source_value STRING, 
			disease_status_source_value STRING );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.fact_relationship (
 
			domain_concept_id_1 INT64 not null, 
			fact_id_1 INT64 not null, 
			domain_concept_id_2 INT64 not null, 
			fact_id_2 INT64 not null, 
			relationship_concept_id INT64 not null );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.location (
 
			location_id INT64 not null, 
			address_1 STRING, 
			address_2 STRING, 
			city STRING, 
			state STRING, 
			zip STRING, 
			county STRING, 
			location_source_value STRING );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.care_site (
 
			care_site_id INT64 not null, 
			care_site_name STRING, 
			place_of_service_concept_id INT64, 
			location_id INT64, 
			care_site_source_value STRING, 
			place_of_service_source_value STRING );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.provider (
 
			provider_id INT64 not null, 
			provider_name STRING, 
			npi STRING, 
			dea STRING, 
			specialty_concept_id INT64, 
			care_site_id INT64, 
			year_of_birth INT64, 
			gender_concept_id INT64, 
			provider_source_value STRING, 
			specialty_source_value STRING, 
			specialty_source_concept_id INT64, 
			gender_source_value STRING, 
			gender_source_concept_id INT64 );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.payer_plan_period (
 
			payer_plan_period_id INT64 not null, 
			person_id INT64 not null, 
			payer_plan_period_start_date date not null, 
			payer_plan_period_end_date date not null, 
			payer_concept_id INT64, 
			payer_source_value STRING, 
			payer_source_concept_id INT64, 
			plan_concept_id INT64, 
			plan_source_value STRING, 
			plan_source_concept_id INT64, 
			sponsor_concept_id INT64, 
			sponsor_source_value STRING, 
			sponsor_source_concept_id INT64, 
			family_source_value STRING, 
			stop_reason_concept_id INT64, 
			stop_reason_source_value STRING, 
			stop_reason_source_concept_id INT64 );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.cost (
 
			cost_id INT64 not null, 
			cost_event_id INT64 not null, 
			cost_domain_id STRING not null, 
			cost_type_concept_id INT64 not null, 
			currency_concept_id INT64, 
			total_charge FLOAT64 null, 
			total_cost FLOAT64 null, 
			total_paid FLOAT64 null, 
			paid_by_payer FLOAT64 null, 
			paid_by_patient FLOAT64 null, 
			paid_patient_copay FLOAT64 null, 
			paid_patient_coinsurance FLOAT64 null, 
			paid_patient_deductible FLOAT64 null, 
			paid_by_primary FLOAT64 null, 
			paid_ingredient_cost FLOAT64 null, 
			paid_dispensing_fee FLOAT64 null, 
			payer_plan_period_id INT64, 
			amount_allowed FLOAT64 null, 
			revenue_code_concept_id INT64, 
			revenue_code_source_value STRING, 
			drg_concept_id INT64, 
			drg_source_value STRING );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.drug_era (
 
			drug_era_id INT64 not null, 
			person_id INT64 not null, 
			drug_concept_id INT64 not null, 
			drug_era_start_date datetime not null, 
			drug_era_end_date datetime not null, 
			drug_exposure_count INT64, 
			gap_days INT64 );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.dose_era (
 
			dose_era_id INT64 not null, 
			person_id INT64 not null, 
			drug_concept_id INT64 not null, 
			unit_concept_id INT64 not null, 
			dose_value FLOAT64 not null, 
			dose_era_start_date datetime not null, 
			dose_era_end_date datetime not null );  

--HINT DISTRIBUTE ON KEY (person_id)
 create table @cdmDatabaseSchema.condition_era (
 
			condition_era_id INT64 not null, 
			person_id INT64 not null, 
			condition_concept_id INT64 not null, 
			condition_era_start_date datetime not null, 
			condition_era_end_date datetime not null, 
			condition_occurrence_count INT64 );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.metadata (
 
			metadata_concept_id INT64 not null, 
			metadata_type_concept_id INT64 not null, 
			name STRING not null, 
			value_as_string STRING, 
			value_as_concept_id INT64, 
			metadata_date date null, 
			metadata_datetime datetime null );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.cdm_source (
 
			cdm_source_name STRING not null, 
			cdm_source_abbreviation STRING, 
			cdm_holder STRING, 
			source_description STRING, 
			source_documentation_reference STRING, 
			cdm_etl_reference STRING, 
			source_release_date date null, 
			cdm_release_date date null, 
			cdm_version STRING, 
			vocabulary_version STRING );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.concept (
 
			concept_id INT64 not null, 
			concept_name STRING not null, 
			domain_id STRING not null, 
			vocabulary_id STRING not null, 
			concept_class_id STRING not null, 
			standard_concept STRING, 
			concept_code STRING not null, 
			valid_start_date date not null, 
			valid_end_date date not null, 
			invalid_reason STRING );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.vocabulary (
 
			vocabulary_id STRING not null, 
			vocabulary_name STRING not null, 
			vocabulary_reference STRING not null, 
			vocabulary_version STRING, 
			vocabulary_concept_id INT64 not null );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.domain (
 
			domain_id STRING not null, 
			domain_name STRING not null, 
			domain_concept_id INT64 not null );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.concept_class (
 
			concept_class_id STRING not null, 
			concept_class_name STRING not null, 
			concept_class_concept_id INT64 not null );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.concept_relationship (
 
			concept_id_1 INT64 not null, 
			concept_id_2 INT64 not null, 
			relationship_id STRING not null, 
			valid_start_date date not null, 
			valid_end_date date not null, 
			invalid_reason STRING );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.relationship (
 
			relationship_id STRING not null, 
			relationship_name STRING not null, 
			is_hierarchical STRING not null, 
			defines_ancestry STRING not null, 
			reverse_relationship_id STRING not null, 
			relationship_concept_id INT64 not null );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.concept_synonym (
 
			concept_id INT64 not null, 
			concept_synonym_name STRING not null, 
			language_concept_id INT64 not null );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.concept_ancestor (
 
			ancestor_concept_id INT64 not null, 
			descendant_concept_id INT64 not null, 
			min_levels_of_separation INT64 not null, 
			max_levels_of_separation INT64 not null );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.source_to_concept_map (
 
			source_code STRING not null, 
			source_concept_id INT64 not null, 
			source_vocabulary_id STRING not null, 
			source_code_description STRING, 
			target_concept_id INT64 not null, 
			target_vocabulary_id STRING not null, 
			valid_start_date date not null, 
			valid_end_date date not null, 
			invalid_reason STRING );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.drug_strength (
 
			drug_concept_id INT64 not null, 
			ingredient_concept_id INT64 not null, 
			amount_value FLOAT64 null, 
			amount_unit_concept_id INT64, 
			numerator_value FLOAT64 null, 
			numerator_unit_concept_id INT64, 
			denominator_value FLOAT64 null, 
			denominator_unit_concept_id INT64, 
			box_size INT64, 
			valid_start_date date not null, 
			valid_end_date date not null, 
			invalid_reason STRING );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.cohort_definition (
 
			cohort_definition_id INT64 not null, 
			cohort_definition_name STRING not null, 
			cohort_definition_description STRING, 
			definition_type_concept_id INT64 not null, 
			cohort_definition_syntax STRING, 
			subject_concept_id INT64 not null, 
			cohort_initiation_date date null );  

--HINT DISTRIBUTE ON RANDOM
 create table @cdmDatabaseSchema.attribute_definition (
 
			attribute_definition_id INT64 not null, 
			attribute_name STRING not null, 
			attribute_description STRING, 
			attribute_type_concept_id INT64 not null, 
			attribute_syntax STRING );