Merge pull request #552 from OHDSI/doc-tooling-support
Tooling support page
This commit is contained in:
clairblacketer
GitHub
commit
119db6b2ea
|
|
@ -0,0 +1,110 @@
|
|||
---
|
||||
title: "**OMOP CDM v5.4 Detailed Tooling Support**"
|
||||
output:
|
||||
html_document:
|
||||
toc: TRUE
|
||||
toc_float: TRUE
|
||||
---
|
||||
|
||||
# Introduction
|
||||
This tables below contain an overview of which standard OHDSI tools make use of which OMOP CDM fields.
|
||||
The goal is to inform ETL developers, tooling developers and CDM extensions.
|
||||
|
||||
- For ETL developers it helps to have guidance on which fieds to prioritise in the mapping. Most value will be gained from populating fields support across the OHDSI tooling.
|
||||
- For OHDSI tooling developers, this page provides insight in the gaps of support and can drive future development efforts.
|
||||
- For CDM extenstions, it helps to known what it means for an OMOP CDM table/field to be part of the standard. In other words: what OHDSI tooling do we at least expect to support the new extensions?
|
||||
|
||||
Currently four OHDSI tools have been evaluated: DataQualityDashboard, Achilles, Atlas (Data Sources and Cohort creation) and Feature Extraction.
|
||||
|
||||
## Criteria
|
||||
Tool | Supports CDM Field if | Link to resource used
|
||||
--- | --- | ---
|
||||
DataQualityDashboard | Part of Field Level checks | https://github.com/OHDSI/DataQualityDashboard/blob/main/inst/csv/OMOP_CDMv5.4_Field_Level.csv
|
||||
Achilles | Covered by at least one Achilles analysis | https://github.com/OHDSI/Achilles/blob/main/inst/csv/achilles/achilles_analysis_details.csv
|
||||
Atlas Data Sources | A statistic based on the field is shown in a 'Data Sources' visualisation | https://atlas-demo.ohdsi.org/
|
||||
Atlas Cohort | Used in te Atlas User Interface for cohort definition criteria (directly, or via 'Add attribute') | https://atlas-demo.ohdsi.org/
|
||||
Feature Extraction | Used in one of the Feature Extraction analyses | https://github.com/OHDSI/FeatureExtraction/blob/main/inst/csv/
|
||||
|
||||
General criteria:
|
||||
- `r emo::ji("white heavy check mark")` if the field essential for OMOP CDM definition (Primary Key, Foreign Key) e.g. person_id not explicitly used, but essential. (if the PK is marked as False, it typically means the whole table is not used in the tool e.g. `_source_value` fields that are used for traceability in ETL)
|
||||
- `r emo::ji("warning")` if field is used by the tool, but not in a meaningful way. e.g. `provider_id` in Achilles only checked for a valid foreign key to the provider table.
|
||||
|
||||
# Tooling Support for OMOP fields
|
||||
**Abbrevations** |
|
||||
--- | ---
|
||||
**PK** | Primary Key
|
||||
**SV** | Source Value (for data quality / etl validation)
|
||||
**BC** | Backwards Compatibility, to support CDM <v5.4
|
||||
**FC** | Forwards Compatibility, to easy support for CDM v6 in the future.
|
||||
|
||||
## Person
|
||||
cdmTableName | cdmFieldName | Special Fields | DQD (v1.0) | Achilles (v1.7) | Atlas Cohort (v2.10) | Atlas Cohort (v2.12) | Atlas Data Sources (v2.12) | Feature Extraction (v3.2) | Comment
|
||||
--- | --- | :---: | :---: | :---: | :---: | :---: | :---: | :---: | ---
|
||||
PERSON | person_id | PK | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
PERSON | gender_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
PERSON | year_of_birth | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
PERSON | month_of_birth | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | day_of_birth | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | birth_datetime | FC | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | race_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
PERSON | ethnicity_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
PERSON | location_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("warning")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | Achilles only does FK check
|
||||
PERSON | provider_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("warning")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | Achilles only does FK check
|
||||
PERSON | care_site_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("warning")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | Achilles only does FK check
|
||||
PERSON | person_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | gender_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | gender_source_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | race_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | race_source_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | ethnicity_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | ethnicity_source_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
|
||||
## Observation Period
|
||||
cdmTableName | cdmFieldName | Special Fields | DQD (v1.0) | Achilles (v1.7) | Atlas Cohort (v2.10) | Atlas Cohort (v2.12) | Atlas Data Sources (v2.12) | Feature Extraction (v3.2) | Comment
|
||||
--- | --- | :---: | :---: | :---: | :---: | :---: | :---: | :---: | ---
|
||||
OBSERVATION_PERIOD | observation_period_id | PK | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
OBSERVATION_PERIOD | person_id | Pid | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
OBSERVATION_PERIOD | observation_period_start_date | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
OBSERVATION_PERIOD | observation_period_end_date | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
OBSERVATION_PERIOD | period_type_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
|
||||
## Visit Occurrence
|
||||
cdmTableName | cdmFieldName | Special Fields | DQD (v1.0) | Achilles (v1.7) | Atlas Cohort (v2.10) | Atlas Cohort (v2.12) | Atlas Data Sources (v2.12) | Feature Extraction (v3.2) | Comment
|
||||
--- | --- | :---: | :---: | :---: | :---: | :---: | :---: | :---: | ---
|
||||
VISIT_OCCURRENCE | visit_occurrence_id | PK | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
VISIT_OCCURRENCE | person_id | Pid | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
VISIT_OCCURRENCE | visit_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
VISIT_OCCURRENCE | visit_source_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
VISIT_OCCURRENCE | visit_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("warning")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
VISIT_OCCURRENCE | visit_start_date | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | Achilles check 1900
|
||||
VISIT_OCCURRENCE | visit_start_datetime | FC | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
VISIT_OCCURRENCE | visit_end_date | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("white heavy check mark")` |
|
||||
VISIT_OCCURRENCE | visit_end_datetime | FC | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
VISIT_OCCURRENCE | visit_type_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
VISIT_OCCURRENCE | provider_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | Atlas uses provider.specialty_concept_id
|
||||
VISIT_OCCURRENCE | care_site_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("warning")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | Achilles only does FK check, Atlas uses care_site.place_of_service_concept_id
|
||||
VISIT_OCCURRENCE | admitted_from_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
VISIT_OCCURRENCE | admitted_from_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("warning")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | Achilles check 1900
|
||||
VISIT_OCCURRENCE | discharged_to_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
VISIT_OCCURRENCE | discharged_to_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("warning")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | Achilles check 1900
|
||||
VISIT_OCCURRENCE | preceding_visit_occurrence_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
|
||||
## Episode
|
||||
cdmTableName | cdmFieldName | Special Fields | DQD (v1.0) | Achilles (v1.7) | Atlas Cohort (v2.10) | Atlas Cohort (v2.12) | Atlas Data Sources (v2.12) | Feature Extraction (v3.2) | Comment
|
||||
--- | --- | :---: | :---: | :---: | :---: | :---: | :---: | :---: | ---
|
||||
EPISODE | episode_id | PK | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | person_id | Pid | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_start_date | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_start_datetime | FC | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_end_date | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_end_datetime | FC | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_parent_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_number | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_object_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_type_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_source_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
|
||||
This was an effort by the CDM Working Group in 2022.
|
||||
*Credits: Clair Blacketer, Maxim Moinat, Nitin Park
|
||||
File diff suppressed because it is too large
Load Diff
|
|
@ -50,6 +50,8 @@ navbar:
|
|||
href: cdm54Changes.html
|
||||
- text: "Entity Relationships"
|
||||
href: cdm54erd.html
|
||||
- text: "Detailed tooling support per CDM field"
|
||||
href: "cdm54ToolingSupport.html"
|
||||
- text: "CDM Proposals"
|
||||
icon: fa-plus-square
|
||||
menu:
|
||||
|
|
|
|||
|
|
@ -23,6 +23,7 @@ This is the specification document for the OMOP Common Data Model, v5.4. **This
|
|||
|
||||
### Current Support for CDM v5.4
|
||||
|
||||
|
||||
The table below details which OHDSI tools support CDM v5.4. There are two levels of support: legacy support means that the tool supports all tables and fields that were present in CDM v5.3 and feature support indicates that the tool supports any new tables and fields in CDM v5.4 that were not present in CDM v5.3. A green check `r emoji::emoji("heavy_check_mark")` indicates that the support level for the listed tool is in place, has been tested, and released. A warning sign `r emoji::emoji("exclamation")` indicates that the support level for the listed tool has been initiated but has not yet been tested and released.
|
||||
<br>
|
||||
|
||||
|
|
|
|||
|
|
@ -0,0 +1,110 @@
|
|||
---
|
||||
title: "**OMOP CDM v5.4 Detailed Tooling Support**"
|
||||
output:
|
||||
html_document:
|
||||
toc: TRUE
|
||||
toc_float: TRUE
|
||||
---
|
||||
|
||||
# Introduction
|
||||
This tables below contain an overview of which standard OHDSI tools make use of which OMOP CDM fields.
|
||||
The goal is to inform ETL developers, tooling developers and CDM extensions.
|
||||
|
||||
- For ETL developers it helps to have guidance on which fieds to prioritise in the mapping. Most value will be gained from populating fields support across the OHDSI tooling.
|
||||
- For OHDSI tooling developers, this page provides insight in the gaps of support and can drive future development efforts.
|
||||
- For CDM extenstions, it helps to known what it means for an OMOP CDM table/field to be part of the standard. In other words: what OHDSI tooling do we at least expect to support the new extensions?
|
||||
|
||||
Currently four OHDSI tools have been evaluated: DataQualityDashboard, Achilles, Atlas (Data Sources and Cohort creation) and Feature Extraction.
|
||||
|
||||
## Criteria
|
||||
Tool | Supports CDM Field if | Link to resource used
|
||||
--- | --- | ---
|
||||
DataQualityDashboard | Part of Field Level checks | https://github.com/OHDSI/DataQualityDashboard/blob/main/inst/csv/OMOP_CDMv5.4_Field_Level.csv
|
||||
Achilles | Covered by at least one Achilles analysis | https://github.com/OHDSI/Achilles/blob/main/inst/csv/achilles/achilles_analysis_details.csv
|
||||
Atlas Data Sources | A statistic based on the field is shown in a 'Data Sources' visualisation | https://atlas-demo.ohdsi.org/
|
||||
Atlas Cohort | Used in te Atlas User Interface for cohort definition criteria (directly, or via 'Add attribute') | https://atlas-demo.ohdsi.org/
|
||||
Feature Extraction | Used in one of the Feature Extraction analyses | https://github.com/OHDSI/FeatureExtraction/blob/main/inst/csv/
|
||||
|
||||
General criteria:
|
||||
- `r emo::ji("white heavy check mark")` if the field essential for OMOP CDM definition (Primary Key, Foreign Key) e.g. person_id not explicitly used, but essential. (if the PK is marked as False, it typically means the whole table is not used in the tool e.g. `_source_value` fields that are used for traceability in ETL)
|
||||
- `r emo::ji("warning")` if field is used by the tool, but not in a meaningful way. e.g. `provider_id` in Achilles only checked for a valid foreign key to the provider table.
|
||||
|
||||
# Tooling Support for OMOP fields
|
||||
**Abbrevations** |
|
||||
--- | ---
|
||||
**PK** | Primary Key
|
||||
**SV** | Source Value (for data quality / etl validation)
|
||||
**BC** | Backwards Compatibility, to support CDM <v5.4
|
||||
**FC** | Forwards Compatibility, to easy support for CDM v6 in the future.
|
||||
|
||||
## Person
|
||||
cdmTableName | cdmFieldName | Special Fields | DQD (v1.0) | Achilles (v1.7) | Atlas Cohort (v2.10) | Atlas Cohort (v2.12) | Atlas Data Sources (v2.12) | Feature Extraction (v3.2) | Comment
|
||||
--- | --- | :---: | :---: | :---: | :---: | :---: | :---: | :---: | ---
|
||||
PERSON | person_id | PK | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
PERSON | gender_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
PERSON | year_of_birth | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
PERSON | month_of_birth | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | day_of_birth | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | birth_datetime | FC | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | race_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
PERSON | ethnicity_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
PERSON | location_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("warning")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | Achilles only does FK check
|
||||
PERSON | provider_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("warning")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | Achilles only does FK check
|
||||
PERSON | care_site_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("warning")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | Achilles only does FK check
|
||||
PERSON | person_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | gender_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | gender_source_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | race_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | race_source_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | ethnicity_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
PERSON | ethnicity_source_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
|
||||
## Observation Period
|
||||
cdmTableName | cdmFieldName | Special Fields | DQD (v1.0) | Achilles (v1.7) | Atlas Cohort (v2.10) | Atlas Cohort (v2.12) | Atlas Data Sources (v2.12) | Feature Extraction (v3.2) | Comment
|
||||
--- | --- | :---: | :---: | :---: | :---: | :---: | :---: | :---: | ---
|
||||
OBSERVATION_PERIOD | observation_period_id | PK | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
OBSERVATION_PERIOD | person_id | Pid | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
OBSERVATION_PERIOD | observation_period_start_date | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
OBSERVATION_PERIOD | observation_period_end_date | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
OBSERVATION_PERIOD | period_type_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
|
||||
## Visit Occurrence
|
||||
cdmTableName | cdmFieldName | Special Fields | DQD (v1.0) | Achilles (v1.7) | Atlas Cohort (v2.10) | Atlas Cohort (v2.12) | Atlas Data Sources (v2.12) | Feature Extraction (v3.2) | Comment
|
||||
--- | --- | :---: | :---: | :---: | :---: | :---: | :---: | :---: | ---
|
||||
VISIT_OCCURRENCE | visit_occurrence_id | PK | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
VISIT_OCCURRENCE | person_id | Pid | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
VISIT_OCCURRENCE | visit_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` |
|
||||
VISIT_OCCURRENCE | visit_source_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
VISIT_OCCURRENCE | visit_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("warning")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
VISIT_OCCURRENCE | visit_start_date | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | Achilles check 1900
|
||||
VISIT_OCCURRENCE | visit_start_datetime | FC | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
VISIT_OCCURRENCE | visit_end_date | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("white heavy check mark")` |
|
||||
VISIT_OCCURRENCE | visit_end_datetime | FC | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
VISIT_OCCURRENCE | visit_type_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
VISIT_OCCURRENCE | provider_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | Atlas uses provider.specialty_concept_id
|
||||
VISIT_OCCURRENCE | care_site_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("warning")` | `r emo::ji("white heavy check mark")` | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | Achilles only does FK check, Atlas uses care_site.place_of_service_concept_id
|
||||
VISIT_OCCURRENCE | admitted_from_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
VISIT_OCCURRENCE | admitted_from_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("warning")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | Achilles check 1900
|
||||
VISIT_OCCURRENCE | discharged_to_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
VISIT_OCCURRENCE | discharged_to_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("warning")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | Achilles check 1900
|
||||
VISIT_OCCURRENCE | preceding_visit_occurrence_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
|
||||
## Episode
|
||||
cdmTableName | cdmFieldName | Special Fields | DQD (v1.0) | Achilles (v1.7) | Atlas Cohort (v2.10) | Atlas Cohort (v2.12) | Atlas Data Sources (v2.12) | Feature Extraction (v3.2) | Comment
|
||||
--- | --- | :---: | :---: | :---: | :---: | :---: | :---: | :---: | ---
|
||||
EPISODE | episode_id | PK | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | person_id | Pid | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_start_date | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_start_datetime | FC | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_end_date | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_end_datetime | FC | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_parent_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_number | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_object_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_type_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_source_value | SV | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
EPISODE | episode_source_concept_id | | `r emo::ji("white heavy check mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` | `r emo::ji("cross_mark")` |
|
||||
|
||||
This was an effort by the CDM Working Group in 2022.
|
||||
*Credits: Clair Blacketer, Maxim Moinat, Nitin Park
|
||||
|
|
@ -0,0 +1,362 @@
|
|||
cdmTableName | cdmFieldName | Special Fields | DQD (v1.0) | Achilles (v1.7) | Atlas Cohort (v2.10) | Atlas Cohort (v2.12) | Atlas Data Sources (v2.12) | Feature Extraction (v3.2) | Comment
|
||||
--- | --- | --- | --- | --- | --- | --- | --- | --- | ---
|
||||
PERSON | person_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
PERSON | gender_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
PERSON | year_of_birth | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
PERSON | month_of_birth | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
||||
PERSON | day_of_birth | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PERSON | birth_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PERSON | race_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
PERSON | ethnicity_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
PERSON | location_id | | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles only does FK check
|
||||
PERSON | provider_id | | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles only does FK check
|
||||
PERSON | care_site_id | | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles only does FK check
|
||||
PERSON | person_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PERSON | gender_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PERSON | gender_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PERSON | race_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PERSON | race_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PERSON | ethnicity_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PERSON | ethnicity_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
OBSERVATION_PERIOD | observation_period_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
OBSERVATION_PERIOD | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
OBSERVATION_PERIOD | observation_period_start_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
OBSERVATION_PERIOD | observation_period_end_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
OBSERVATION_PERIOD | period_type_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
VISIT_OCCURRENCE | visit_occurrence_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
VISIT_OCCURRENCE | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
VISIT_OCCURRENCE | visit_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
VISIT_OCCURRENCE | visit_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
VISIT_OCCURRENCE | visit_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE |
|
||||
VISIT_OCCURRENCE | visit_start_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE | Achilles check 1900
|
||||
VISIT_OCCURRENCE | visit_start_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
VISIT_OCCURRENCE | visit_end_date | | TRUE | TRUE | TRUE | TRUE | FALSE | TRUE |
|
||||
VISIT_OCCURRENCE | visit_end_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
VISIT_OCCURRENCE | visit_type_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
VISIT_OCCURRENCE | provider_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE | Atlas uses provider.specialty_concept_id
|
||||
VISIT_OCCURRENCE | care_site_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles only does FK check, Atlas uses care_site.place_of_service_concept_id
|
||||
VISIT_OCCURRENCE | admitted_from_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
VISIT_OCCURRENCE | admitted_from_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
VISIT_OCCURRENCE | discharged_to_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
VISIT_OCCURRENCE | discharged_to_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
VISIT_OCCURRENCE | preceding_visit_occurrence_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CONDITION_OCCURRENCE | condition_occurrence_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
CONDITION_OCCURRENCE | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
CONDITION_OCCURRENCE | condition_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
CONDITION_OCCURRENCE | condition_start_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
CONDITION_OCCURRENCE | condition_start_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CONDITION_OCCURRENCE | condition_end_date | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles only checks end_date < start_date
|
||||
CONDITION_OCCURRENCE | condition_end_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CONDITION_OCCURRENCE | condition_type_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
||||
CONDITION_OCCURRENCE | condition_status_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
CONDITION_OCCURRENCE | stop_reason | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE | Atlas has a 'contains' free-text filter on stop_reason
|
||||
CONDITION_OCCURRENCE | provider_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles only does FK check
|
||||
CONDITION_OCCURRENCE | visit_occurrence_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | TRUE | Achilles only does FK check, FeatureExtraction for HDPS
|
||||
CONDITION_OCCURRENCE | visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CONDITION_OCCURRENCE | condition_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
CONDITION_OCCURRENCE | condition_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
CONDITION_OCCURRENCE | condition_status_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
PROCEDURE_OCCURRENCE | procedure_occurrence_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
PROCEDURE_OCCURRENCE | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
PROCEDURE_OCCURRENCE | procedure_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
PROCEDURE_OCCURRENCE | procedure_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
PROCEDURE_OCCURRENCE | procedure_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PROCEDURE_OCCURRENCE | procedure_end_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PROCEDURE_OCCURRENCE | procedure_end_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PROCEDURE_OCCURRENCE | procedure_type_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
||||
PROCEDURE_OCCURRENCE | modifier_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
PROCEDURE_OCCURRENCE | quantity | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
PROCEDURE_OCCURRENCE | provider_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles only does FK check
|
||||
PROCEDURE_OCCURRENCE | visit_occurrence_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | TRUE | Achilles only does FK check, FeatureExtraction for HDPS
|
||||
PROCEDURE_OCCURRENCE | visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PROCEDURE_OCCURRENCE | procedure_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
PROCEDURE_OCCURRENCE | procedure_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
PROCEDURE_OCCURRENCE | modifier_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
FACT_RELATIONSHIP | domain_concept_id_1 | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
FACT_RELATIONSHIP | fact_id_1 | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
FACT_RELATIONSHIP | domain_concept_id_2 | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
FACT_RELATIONSHIP | fact_id_2 | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
FACT_RELATIONSHIP | relationship_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PROVIDER | provider_id | PK | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
PROVIDER | provider_name | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PROVIDER | npi | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PROVIDER | dea | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PROVIDER | specialty_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE | Atlas: via visit occurrence
|
||||
PROVIDER | care_site_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PROVIDER | year_of_birth | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PROVIDER | gender_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PROVIDER | provider_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PROVIDER | specialty_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
PROVIDER | specialty_source_concept_id | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
||||
PROVIDER | gender_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
PROVIDER | gender_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DRUG_EXPOSURE | drug_exposure_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
DRUG_EXPOSURE | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
DRUG_EXPOSURE | drug_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
DRUG_EXPOSURE | drug_exposure_start_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
DRUG_EXPOSURE | drug_exposure_start_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DRUG_EXPOSURE | drug_exposure_end_date | | TRUE | TRUE* | TRUE | TRUE | FALSE | TRUE | Achilles only checks end_date < start_date
|
||||
DRUG_EXPOSURE | drug_exposure_end_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DRUG_EXPOSURE | verbatim_end_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DRUG_EXPOSURE | drug_type_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
||||
DRUG_EXPOSURE | stop_reason | BC | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DRUG_EXPOSURE | refills | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
DRUG_EXPOSURE | quantity | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
DRUG_EXPOSURE | days_supply | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE | Needed for drug era derivation
|
||||
DRUG_EXPOSURE | sig | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DRUG_EXPOSURE | route_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DRUG_EXPOSURE | lot_number | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DRUG_EXPOSURE | provider_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles only does FK check
|
||||
DRUG_EXPOSURE | visit_occurrence_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles only does FK check
|
||||
DRUG_EXPOSURE | visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DRUG_EXPOSURE | drug_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
DRUG_EXPOSURE | drug_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
DRUG_EXPOSURE | route_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
DRUG_EXPOSURE | dose_unit_source_value | BC | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DEVICE_EXPOSURE | device_exposure_id | PK | TRUE | TRUE | TRUE | TRUE | FALSE | TRUE |
|
||||
DEVICE_EXPOSURE | person_id | Pid | TRUE | TRUE | TRUE | TRUE | FALSE | TRUE |
|
||||
DEVICE_EXPOSURE | device_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | TRUE |
|
||||
DEVICE_EXPOSURE | device_exposure_start_date | | TRUE | TRUE | TRUE | TRUE | FALSE | TRUE |
|
||||
DEVICE_EXPOSURE | device_exposure_start_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DEVICE_EXPOSURE | device_exposure_end_date | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DEVICE_EXPOSURE | device_exposure_end_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DEVICE_EXPOSURE | device_type_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
DEVICE_EXPOSURE | unique_device_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DEVICE_EXPOSURE | production_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DEVICE_EXPOSURE | quantity | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DEVICE_EXPOSURE | provider_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DEVICE_EXPOSURE | visit_occurrence_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DEVICE_EXPOSURE | visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DEVICE_EXPOSURE | device_source_value | | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
DEVICE_EXPOSURE | device_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
DEVICE_EXPOSURE | unit_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DEVICE_EXPOSURE | unit_source_value | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DEVICE_EXPOSURE | unit_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
MEASUREMENT | measurement_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
MEASUREMENT | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
MEASUREMENT | measurement_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
MEASUREMENT | measurement_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
MEASUREMENT | measurement_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
MEASUREMENT | measurement_time | BC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
MEASUREMENT | measurement_type_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
||||
MEASUREMENT | operator_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
||||
MEASUREMENT | value_as_number | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
MEASUREMENT | value_as_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
||||
MEASUREMENT | unit_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
MEASUREMENT | range_low | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
MEASUREMENT | range_high | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
MEASUREMENT | provider_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
MEASUREMENT | visit_occurrence_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
MEASUREMENT | visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
MEASUREMENT | measurement_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
MEASUREMENT | measurement_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
MEASUREMENT | unit_source_value | SV | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles check 1900
|
||||
MEASUREMENT | unit_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
MEASUREMENT | value_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
MEASUREMENT | measurement_event_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
MEASUREMENT | meas_event_field_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
OBSERVATION | observation_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
OBSERVATION | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
OBSERVATION | observation_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
OBSERVATION | observation_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
OBSERVATION | observation_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
OBSERVATION | observation_type_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
||||
OBSERVATION | value_as_number | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
OBSERVATION | value_as_string | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
OBSERVATION | value_as_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
||||
OBSERVATION | qualifier_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
||||
OBSERVATION | unit_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
OBSERVATION | provider_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
OBSERVATION | visit_occurrence_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
OBSERVATION | visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
OBSERVATION | observation_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
OBSERVATION | observation_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
OBSERVATION | unit_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
OBSERVATION | qualifier_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
OBSERVATION | value_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
OBSERVATION | observation_event_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
OBSERVATION | obs_event_field_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DEATH | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
||||
DEATH | death_date | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
||||
DEATH | death_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DEATH | death_type_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
||||
DEATH | cause_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
DEATH | cause_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
DEATH | cause_source_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
NOTE | note_id | PK | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE | person_id | Pid | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE | note_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE | note_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE | note_type_concept_id | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE | note_class_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE | note_title | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE | note_text | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE | encoding_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE | language_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE | provider_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE | visit_occurrence_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE | visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE | note_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE | note_event_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE | note_event_field_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE_NLP | note_nlp_id | PK | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE_NLP | note_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE_NLP | section_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE_NLP | snippet | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE_NLP | offset | | FALSE | FALSE | FALSE | FALSE | FALSE | FALSE | Offset is a SQL-keyword, causing syntax errors
|
||||
NOTE_NLP | lexical_variant | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE_NLP | note_nlp_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE_NLP | note_nlp_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE_NLP | nlp_system | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE_NLP | nlp_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE_NLP | nlp_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE_NLP | term_exists | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE_NLP | term_temporal | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
NOTE_NLP | term_modifiers | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
SPECIMEN | specimen_id | PK | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
SPECIMEN | person_id | Pid | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
SPECIMEN | specimen_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
SPECIMEN | specimen_type_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
SPECIMEN | specimen_date | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
SPECIMEN | specimen_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
SPECIMEN | quantity | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
SPECIMEN | unit_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
SPECIMEN | anatomic_site_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
SPECIMEN | disease_status_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
SPECIMEN | specimen_source_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
SPECIMEN | specimen_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
SPECIMEN | unit_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
SPECIMEN | anatomic_site_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
SPECIMEN | disease_status_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
VISIT_DETAIL | visit_detail_id | PK | TRUE | TRUE | FALSE | TRUE | FALSE | FALSE |
|
||||
VISIT_DETAIL | person_id | Pid | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
||||
VISIT_DETAIL | visit_detail_concept_id | | TRUE | TRUE | FALSE | TRUE | FALSE | FALSE |
|
||||
VISIT_DETAIL | visit_detail_start_date | | TRUE | TRUE | FALSE | TRUE | FALSE | FALSE |
|
||||
VISIT_DETAIL | visit_detail_start_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
VISIT_DETAIL | visit_detail_end_date | | TRUE | TRUE | FALSE | TRUE | FALSE | FALSE |
|
||||
VISIT_DETAIL | visit_detail_end_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
VISIT_DETAIL | visit_detail_type_concept_id | | TRUE | FALSE | FALSE | TRUE | FALSE | FALSE |
|
||||
VISIT_DETAIL | provider_id | | TRUE | FALSE | FALSE | TRUE | FALSE | FALSE |
|
||||
VISIT_DETAIL | care_site_id | | TRUE | TRUE* | FALSE | TRUE | FALSE | FALSE | Achilles only does FK check
|
||||
VISIT_DETAIL | visit_detail_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
VISIT_DETAIL | visit_detail_source_concept_id | | TRUE | TRUE | FALSE | TRUE | FALSE | FALSE |
|
||||
VISIT_DETAIL | admitted_from_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
VISIT_DETAIL | admitted_from_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
VISIT_DETAIL | discharged_to_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
VISIT_DETAIL | discharged_to_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
VISIT_DETAIL | preceding_visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
VISIT_DETAIL | parent_visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
VISIT_DETAIL | visit_occurrence_id | | TRUE | FALSE | FALSE | TRUE | FALSE | FALSE |
|
||||
LOCATION | location_id | PK | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
||||
LOCATION | address_1 | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
LOCATION | address_2 | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
LOCATION | city | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
LOCATION | state | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
||||
LOCATION | zip | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
||||
LOCATION | county | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
LOCATION | location_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
LOCATION | country_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
LOCATION | country_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
LOCATION | latitude | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
LOCATION | longitude | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CARE_SITE | care_site_id | PK | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
CARE_SITE | care_site_name | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CARE_SITE | place_of_service_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE | Atlas: via visit occurrence
|
||||
CARE_SITE | location_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
CARE_SITE | care_site_source_value | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CARE_SITE | place_of_service_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PAYER_PLAN_PERIOD | payer_plan_period_id | PK | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
PAYER_PLAN_PERIOD | person_id | Pid | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
PAYER_PLAN_PERIOD | payer_plan_period_start_date | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
PAYER_PLAN_PERIOD | payer_plan_period_end_date | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
PAYER_PLAN_PERIOD | payer_concept_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles check 1900
|
||||
PAYER_PLAN_PERIOD | payer_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
PAYER_PLAN_PERIOD | payer_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
||||
PAYER_PLAN_PERIOD | plan_concept_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles check 1900
|
||||
PAYER_PLAN_PERIOD | plan_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
PAYER_PLAN_PERIOD | plan_source_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
PAYER_PLAN_PERIOD | sponsor_concept_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles check 1900
|
||||
PAYER_PLAN_PERIOD | sponsor_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
PAYER_PLAN_PERIOD | sponsor_source_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
PAYER_PLAN_PERIOD | family_source_value | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
PAYER_PLAN_PERIOD | stop_reason_concept_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles check 1900
|
||||
PAYER_PLAN_PERIOD | stop_reason_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
||||
PAYER_PLAN_PERIOD | stop_reason_source_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
COST | cost_id | PK | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | cost_event_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | cost_domain_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | cost_type_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | currency_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | total_charge | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | total_cost | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | total_paid | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | paid_by_payer | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | paid_by_patient | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | paid_patient_copay | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | paid_patient_coinsurance | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | paid_patient_deductible | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | paid_by_primary | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | paid_ingredient_cost | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | paid_dispensing_fee | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | payer_plan_period_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | amount_allowed | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | revenue_code_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | revenue_code_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | drg_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
COST | drg_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
DRUG_ERA | drug_era_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
DRUG_ERA | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
DRUG_ERA | drug_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
DRUG_ERA | drug_era_start_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
DRUG_ERA | drug_era_end_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
DRUG_ERA | drug_exposure_count | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DRUG_ERA | gap_days | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DOSE_ERA | dose_era_id | PK | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DOSE_ERA | person_id | Pid | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DOSE_ERA | drug_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DOSE_ERA | unit_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DOSE_ERA | dose_value | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DOSE_ERA | dose_era_start_date | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
DOSE_ERA | dose_era_end_date | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
CONDITION_ERA | condition_era_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
CONDITION_ERA | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
CONDITION_ERA | condition_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
CONDITION_ERA | condition_era_start_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
||||
CONDITION_ERA | condition_era_end_date | | TRUE | TRUE | TRUE | TRUE | FALSE | TRUE |
|
||||
CONDITION_ERA | condition_occurrence_count | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
||||
EPISODE | episode_id | PK | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
EPISODE | person_id | Pid | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
EPISODE | episode_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
EPISODE | episode_start_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
EPISODE | episode_start_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
EPISODE | episode_end_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
EPISODE | episode_end_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
EPISODE | episode_parent_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
EPISODE | episode_number | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
EPISODE | episode_object_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
EPISODE | episode_type_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
EPISODE | episode_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
EPISODE | episode_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
EPISODE_EVENT | episode_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
EPISODE_EVENT | event_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
EPISODE_EVENT | episode_event_field_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
METADATA | metadata_id | PK | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
METADATA | metadata_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
METADATA | metadata_type_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
METADATA | name | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
METADATA | value_as_string | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
METADATA | value_as_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
METADATA | value_as_number | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
METADATA | metadata_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
METADATA | metadata_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CDM_SOURCE | cdm_source_name | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CDM_SOURCE | cdm_source_abbreviation | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CDM_SOURCE | cdm_holder | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CDM_SOURCE | source_description | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CDM_SOURCE | source_documentation_reference | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CDM_SOURCE | cdm_etl_reference | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CDM_SOURCE | source_release_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CDM_SOURCE | cdm_release_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CDM_SOURCE | cdm_version | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CDM_SOURCE | cdm_version_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
CDM_SOURCE | vocabulary_version | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
||||
Loading…
Reference in New Issue