Merge e464937853 into 1e0360980a
This commit is contained in:
Benjamin De Boe
GitHub
commit
1e68d6e0b3
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@ -47,6 +47,11 @@ jobs:
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CDMDDLBASE_ORACLE_PASSWORD: ${{ secrets.CDMDDLBASE_ORACLE_PASSWORD }}
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CDMDDLBASE_ORACLE_PASSWORD: ${{ secrets.CDMDDLBASE_ORACLE_PASSWORD }}
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CDMDDLBASE_ORACLE_SERVER: ${{ secrets.CDMDDLBASE_ORACLE_SERVER }}
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CDMDDLBASE_ORACLE_SERVER: ${{ secrets.CDMDDLBASE_ORACLE_SERVER }}
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CDMDDLBASE_ORACLE_CDM_SCHEMA: ${{ secrets.CDMDDLBASE_ORACLE_CDM_SCHEMA }}
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CDMDDLBASE_ORACLE_CDM_SCHEMA: ${{ secrets.CDMDDLBASE_ORACLE_CDM_SCHEMA }}
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CDM_IRIS_CONNECTION_STRING: ${{ secrets.CDM_IRIS_CONNECTION_STRING }}
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CDM_IRIS_USER: ${{ secrets.CDM_IRIS_USER }}
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CDM_IRIS_PASSWORD: ${{ secrets.CDM_IRIS_PASSWORD }}
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CDM_IRIS_CDM_SCHEMA: ${{ secrets.CDM_IRIS_CDM_SCHEMA }}
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CDM_IRIS_OHDSI_SCHEMA: ${{ secrets.CDM_IRIS_OHDSI_SCHEMA }}
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steps:
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steps:
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- uses: actions/checkout@v4
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- uses: actions/checkout@v4
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@ -67,7 +72,7 @@ jobs:
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- name: Cache R packages
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- name: Cache R packages
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if: runner.os != 'Windows'
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if: runner.os != 'Windows'
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uses: actions/cache@v3.3.1
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uses: actions/cache@v4
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with:
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with:
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path: ${{ env.R_LIBS_USER }}
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path: ${{ env.R_LIBS_USER }}
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key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
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key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
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@ -111,14 +116,14 @@ jobs:
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- name: Upload check results
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- name: Upload check results
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if: failure()
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if: failure()
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uses: actions/upload-artifact@v2
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uses: actions/upload-artifact@v4
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with:
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with:
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name: ${{ runner.os }}-r${{ matrix.config.r }}-results
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name: ${{ runner.os }}-r${{ matrix.config.r }}-results
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path: check
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path: check
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- name: Upload source package
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- name: Upload source package
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if: success() && runner.os == 'macOS' && github.event_name != 'pull_request' && github.ref == 'refs/heads/master'
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if: success() && runner.os == 'macOS' && github.event_name != 'pull_request' && github.ref == 'refs/heads/master'
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uses: actions/upload-artifact@v2
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uses: actions/upload-artifact@v4
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with:
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with:
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name: package_tarball
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name: package_tarball
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path: check/*.tar.gz
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path: check/*.tar.gz
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@ -127,4 +132,3 @@ jobs:
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if: runner.os == 'macOS'
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if: runner.os == 'macOS'
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run: covr::codecov()
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run: covr::codecov()
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shell: Rscript {0}
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shell: Rscript {0}
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@ -1,4 +1,5 @@
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Version: 1.0
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Version: 1.0
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ProjectId: 54514637-59b4-4d43-83cf-67c54a4f8941
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RestoreWorkspace: Default
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RestoreWorkspace: Default
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SaveWorkspace: Default
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SaveWorkspace: Default
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@ -0,0 +1,158 @@
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--iris CDM Foreign Key Constraints for OMOP Common Data Model 5.3
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_gender_concept_id FOREIGN KEY (gender_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_race_concept_id FOREIGN KEY (race_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_ethnicity_concept_id FOREIGN KEY (ethnicity_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_location_id FOREIGN KEY (location_id) REFERENCES @cdmDatabaseSchema.LOCATION (LOCATION_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_race_source_concept_id FOREIGN KEY (race_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_ethnicity_source_concept_id FOREIGN KEY (ethnicity_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.observation_period ADD CONSTRAINT fpk_observation_period_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.observation_period ADD CONSTRAINT fpk_observation_period_period_type_concept_id FOREIGN KEY (period_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_visit_concept_id FOREIGN KEY (visit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_visit_type_concept_id FOREIGN KEY (visit_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_visit_source_concept_id FOREIGN KEY (visit_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_admitting_source_concept_id FOREIGN KEY (admitting_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_discharge_to_concept_id FOREIGN KEY (discharge_to_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_preceding_visit_occurrence_id FOREIGN KEY (preceding_visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_visit_detail_concept_id FOREIGN KEY (visit_detail_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_visit_detail_type_concept_id FOREIGN KEY (visit_detail_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_visit_detail_source_concept_id FOREIGN KEY (visit_detail_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_admitting_source_concept_id FOREIGN KEY (admitting_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_discharge_to_concept_id FOREIGN KEY (discharge_to_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_preceding_visit_detail_id FOREIGN KEY (preceding_visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_visit_detail_parent_id FOREIGN KEY (visit_detail_parent_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_condition_type_concept_id FOREIGN KEY (condition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_condition_status_concept_id FOREIGN KEY (condition_status_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_condition_source_concept_id FOREIGN KEY (condition_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_drug_type_concept_id FOREIGN KEY (drug_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_route_concept_id FOREIGN KEY (route_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_drug_source_concept_id FOREIGN KEY (drug_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_procedure_concept_id FOREIGN KEY (procedure_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_procedure_type_concept_id FOREIGN KEY (procedure_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_modifier_concept_id FOREIGN KEY (modifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_device_concept_id FOREIGN KEY (device_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_device_type_concept_id FOREIGN KEY (device_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_device_source_concept_id FOREIGN KEY (device_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_measurement_concept_id FOREIGN KEY (measurement_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_measurement_type_concept_id FOREIGN KEY (measurement_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_operator_concept_id FOREIGN KEY (operator_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_measurement_source_concept_id FOREIGN KEY (measurement_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_observation_concept_id FOREIGN KEY (observation_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_observation_type_concept_id FOREIGN KEY (observation_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_qualifier_concept_id FOREIGN KEY (qualifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||||
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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||||||
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_observation_source_concept_id FOREIGN KEY (observation_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.death ADD CONSTRAINT fpk_death_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
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ALTER TABLE @cdmDatabaseSchema.death ADD CONSTRAINT fpk_death_death_type_concept_id FOREIGN KEY (death_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.death ADD CONSTRAINT fpk_death_cause_concept_id FOREIGN KEY (cause_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.death ADD CONSTRAINT fpk_death_cause_source_concept_id FOREIGN KEY (cause_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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||||||
|
ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_note_type_concept_id FOREIGN KEY (note_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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||||||
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_note_class_concept_id FOREIGN KEY (note_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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||||||
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_encoding_concept_id FOREIGN KEY (encoding_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_language_concept_id FOREIGN KEY (language_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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||||||
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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||||||
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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||||||
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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||||||
|
ALTER TABLE @cdmDatabaseSchema.note_nlp ADD CONSTRAINT fpk_note_nlp_section_concept_id FOREIGN KEY (section_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note_nlp ADD CONSTRAINT fpk_note_nlp_note_nlp_concept_id FOREIGN KEY (note_nlp_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note_nlp ADD CONSTRAINT fpk_note_nlp_note_nlp_source_concept_id FOREIGN KEY (note_nlp_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_specimen_concept_id FOREIGN KEY (specimen_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_specimen_type_concept_id FOREIGN KEY (specimen_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_anatomic_site_concept_id FOREIGN KEY (anatomic_site_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_disease_status_concept_id FOREIGN KEY (disease_status_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.fact_relationship ADD CONSTRAINT fpk_fact_relationship_domain_concept_id_1 FOREIGN KEY (domain_concept_id_1) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.fact_relationship ADD CONSTRAINT fpk_fact_relationship_domain_concept_id_2 FOREIGN KEY (domain_concept_id_2) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.fact_relationship ADD CONSTRAINT fpk_fact_relationship_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.care_site ADD CONSTRAINT fpk_care_site_place_of_service_concept_id FOREIGN KEY (place_of_service_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.care_site ADD CONSTRAINT fpk_care_site_location_id FOREIGN KEY (location_id) REFERENCES @cdmDatabaseSchema.LOCATION (LOCATION_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT fpk_provider_specialty_concept_id FOREIGN KEY (specialty_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT fpk_provider_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT fpk_provider_gender_concept_id FOREIGN KEY (gender_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT fpk_provider_specialty_source_concept_id FOREIGN KEY (specialty_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT fpk_provider_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_payer_concept_id FOREIGN KEY (payer_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_payer_source_concept_id FOREIGN KEY (payer_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_plan_concept_id FOREIGN KEY (plan_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_plan_source_concept_id FOREIGN KEY (plan_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_sponsor_concept_id FOREIGN KEY (sponsor_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_sponsor_source_concept_id FOREIGN KEY (sponsor_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_stop_reason_concept_id FOREIGN KEY (stop_reason_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_stop_reason_source_concept_id FOREIGN KEY (stop_reason_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT fpk_cost_cost_domain_id FOREIGN KEY (cost_domain_id) REFERENCES @cdmDatabaseSchema."DOMAIN" (DOMAIN_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT fpk_cost_cost_type_concept_id FOREIGN KEY (cost_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT fpk_cost_currency_concept_id FOREIGN KEY (currency_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT fpk_cost_revenue_code_concept_id FOREIGN KEY (revenue_code_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT fpk_cost_drg_concept_id FOREIGN KEY (drg_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_era ADD CONSTRAINT fpk_drug_era_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_era ADD CONSTRAINT fpk_drug_era_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.dose_era ADD CONSTRAINT fpk_dose_era_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.dose_era ADD CONSTRAINT fpk_dose_era_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.dose_era ADD CONSTRAINT fpk_dose_era_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.condition_era ADD CONSTRAINT fpk_condition_era_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.metadata ADD CONSTRAINT fpk_metadata_metadata_concept_id FOREIGN KEY (metadata_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.metadata ADD CONSTRAINT fpk_metadata_metadata_type_concept_id FOREIGN KEY (metadata_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.metadata ADD CONSTRAINT fpk_metadata_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept ADD CONSTRAINT fpk_concept_domain_id FOREIGN KEY (domain_id) REFERENCES @cdmDatabaseSchema."DOMAIN" (DOMAIN_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept ADD CONSTRAINT fpk_concept_vocabulary_id FOREIGN KEY (vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept ADD CONSTRAINT fpk_concept_concept_class_id FOREIGN KEY (concept_class_id) REFERENCES @cdmDatabaseSchema.CONCEPT_CLASS (CONCEPT_CLASS_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.vocabulary ADD CONSTRAINT fpk_vocabulary_vocabulary_concept_id FOREIGN KEY (vocabulary_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema."DOMAIN" ADD CONSTRAINT fpk_domain_domain_concept_id FOREIGN KEY (domain_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_class ADD CONSTRAINT fpk_concept_class_concept_class_concept_id FOREIGN KEY (concept_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_relationship ADD CONSTRAINT fpk_concept_relationship_concept_id_1 FOREIGN KEY (concept_id_1) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_relationship ADD CONSTRAINT fpk_concept_relationship_concept_id_2 FOREIGN KEY (concept_id_2) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_relationship ADD CONSTRAINT fpk_concept_relationship_relationship_id FOREIGN KEY (relationship_id) REFERENCES @cdmDatabaseSchema.RELATIONSHIP (RELATIONSHIP_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.relationship ADD CONSTRAINT fpk_relationship_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_synonym ADD CONSTRAINT fpk_concept_synonym_concept_id FOREIGN KEY (concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_synonym ADD CONSTRAINT fpk_concept_synonym_language_concept_id FOREIGN KEY (language_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_ancestor ADD CONSTRAINT fpk_concept_ancestor_ancestor_concept_id FOREIGN KEY (ancestor_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_ancestor ADD CONSTRAINT fpk_concept_ancestor_descendant_concept_id FOREIGN KEY (descendant_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_source_concept_id FOREIGN KEY (source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_target_concept_id FOREIGN KEY (target_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_target_vocabulary_id FOREIGN KEY (target_vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT fpk_drug_strength_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT fpk_drug_strength_ingredient_concept_id FOREIGN KEY (ingredient_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT fpk_drug_strength_amount_unit_concept_id FOREIGN KEY (amount_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT fpk_drug_strength_numerator_unit_concept_id FOREIGN KEY (numerator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT fpk_drug_strength_denominator_unit_concept_id FOREIGN KEY (denominator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cohort_definition ADD CONSTRAINT fpk_cohort_definition_definition_type_concept_id FOREIGN KEY (definition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cohort_definition ADD CONSTRAINT fpk_cohort_definition_subject_concept_id FOREIGN KEY (subject_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.attribute_definition ADD CONSTRAINT fpk_attribute_definition_attribute_type_concept_id FOREIGN KEY (attribute_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
|
@ -0,0 +1,471 @@
|
||||||
|
--iris CDM DDL Specification for OMOP Common Data Model 5.3
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.person (
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
gender_concept_id integer NOT NULL,
|
||||||
|
year_of_birth integer NOT NULL,
|
||||||
|
month_of_birth integer NULL,
|
||||||
|
day_of_birth integer NULL,
|
||||||
|
birth_datetime datetime NULL,
|
||||||
|
race_concept_id integer NOT NULL,
|
||||||
|
ethnicity_concept_id integer NOT NULL,
|
||||||
|
location_id integer NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
care_site_id integer NULL,
|
||||||
|
person_source_value varchar(50) NULL,
|
||||||
|
gender_source_value varchar(50) NULL,
|
||||||
|
gender_source_concept_id integer NULL,
|
||||||
|
race_source_value varchar(50) NULL,
|
||||||
|
race_source_concept_id integer NULL,
|
||||||
|
ethnicity_source_value varchar(50) NULL,
|
||||||
|
ethnicity_source_concept_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.observation_period (
|
||||||
|
observation_period_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
observation_period_start_date date NOT NULL,
|
||||||
|
observation_period_end_date date NOT NULL,
|
||||||
|
period_type_concept_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.visit_occurrence (
|
||||||
|
visit_occurrence_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
visit_concept_id integer NOT NULL,
|
||||||
|
visit_start_date date NOT NULL,
|
||||||
|
visit_start_datetime datetime NULL,
|
||||||
|
visit_end_date date NOT NULL,
|
||||||
|
visit_end_datetime datetime NULL,
|
||||||
|
visit_type_concept_id Integer NOT NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
care_site_id integer NULL,
|
||||||
|
visit_source_value varchar(50) NULL,
|
||||||
|
visit_source_concept_id integer NULL,
|
||||||
|
admitting_source_concept_id integer NULL,
|
||||||
|
admitting_source_value varchar(50) NULL,
|
||||||
|
discharge_to_concept_id integer NULL,
|
||||||
|
discharge_to_source_value varchar(50) NULL,
|
||||||
|
preceding_visit_occurrence_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.visit_detail (
|
||||||
|
visit_detail_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
visit_detail_concept_id integer NOT NULL,
|
||||||
|
visit_detail_start_date date NOT NULL,
|
||||||
|
visit_detail_start_datetime datetime NULL,
|
||||||
|
visit_detail_end_date date NOT NULL,
|
||||||
|
visit_detail_end_datetime datetime NULL,
|
||||||
|
visit_detail_type_concept_id integer NOT NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
care_site_id integer NULL,
|
||||||
|
visit_detail_source_value varchar(50) NULL,
|
||||||
|
visit_detail_source_concept_id Integer NULL,
|
||||||
|
admitting_source_value Varchar(50) NULL,
|
||||||
|
admitting_source_concept_id Integer NULL,
|
||||||
|
discharge_to_source_value Varchar(50) NULL,
|
||||||
|
discharge_to_concept_id integer NULL,
|
||||||
|
preceding_visit_detail_id integer NULL,
|
||||||
|
visit_detail_parent_id integer NULL,
|
||||||
|
visit_occurrence_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.condition_occurrence (
|
||||||
|
condition_occurrence_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
condition_concept_id integer NOT NULL,
|
||||||
|
condition_start_date date NOT NULL,
|
||||||
|
condition_start_datetime datetime NULL,
|
||||||
|
condition_end_date date NULL,
|
||||||
|
condition_end_datetime datetime NULL,
|
||||||
|
condition_type_concept_id integer NOT NULL,
|
||||||
|
condition_status_concept_id integer NULL,
|
||||||
|
stop_reason varchar(20) NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
condition_source_value varchar(50) NULL,
|
||||||
|
condition_source_concept_id integer NULL,
|
||||||
|
condition_status_source_value varchar(50) NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.drug_exposure (
|
||||||
|
drug_exposure_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
drug_concept_id integer NOT NULL,
|
||||||
|
drug_exposure_start_date date NOT NULL,
|
||||||
|
drug_exposure_start_datetime datetime NULL,
|
||||||
|
drug_exposure_end_date date NOT NULL,
|
||||||
|
drug_exposure_end_datetime datetime NULL,
|
||||||
|
verbatim_end_date date NULL,
|
||||||
|
drug_type_concept_id integer NOT NULL,
|
||||||
|
stop_reason varchar(20) NULL,
|
||||||
|
refills integer NULL,
|
||||||
|
quantity float NULL,
|
||||||
|
days_supply integer NULL,
|
||||||
|
sig varchar(MAX) NULL,
|
||||||
|
route_concept_id integer NULL,
|
||||||
|
lot_number varchar(50) NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
drug_source_value varchar(50) NULL,
|
||||||
|
drug_source_concept_id integer NULL,
|
||||||
|
route_source_value varchar(50) NULL,
|
||||||
|
dose_unit_source_value varchar(50) NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.procedure_occurrence (
|
||||||
|
procedure_occurrence_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
procedure_concept_id integer NOT NULL,
|
||||||
|
procedure_date date NOT NULL,
|
||||||
|
procedure_datetime datetime NULL,
|
||||||
|
procedure_type_concept_id integer NOT NULL,
|
||||||
|
modifier_concept_id integer NULL,
|
||||||
|
quantity integer NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
procedure_source_value varchar(50) NULL,
|
||||||
|
procedure_source_concept_id integer NULL,
|
||||||
|
modifier_source_value varchar(50) NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.device_exposure (
|
||||||
|
device_exposure_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
device_concept_id integer NOT NULL,
|
||||||
|
device_exposure_start_date date NOT NULL,
|
||||||
|
device_exposure_start_datetime datetime NULL,
|
||||||
|
device_exposure_end_date date NULL,
|
||||||
|
device_exposure_end_datetime datetime NULL,
|
||||||
|
device_type_concept_id integer NOT NULL,
|
||||||
|
unique_device_id varchar(50) NULL,
|
||||||
|
quantity integer NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
device_source_value varchar(50) NULL,
|
||||||
|
device_source_concept_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.measurement (
|
||||||
|
measurement_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
measurement_concept_id integer NOT NULL,
|
||||||
|
measurement_date date NOT NULL,
|
||||||
|
measurement_datetime datetime NULL,
|
||||||
|
measurement_time varchar(10) NULL,
|
||||||
|
measurement_type_concept_id integer NOT NULL,
|
||||||
|
operator_concept_id integer NULL,
|
||||||
|
value_as_number float NULL,
|
||||||
|
value_as_concept_id integer NULL,
|
||||||
|
unit_concept_id integer NULL,
|
||||||
|
range_low float NULL,
|
||||||
|
range_high float NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
measurement_source_value varchar(50) NULL,
|
||||||
|
measurement_source_concept_id integer NULL,
|
||||||
|
unit_source_value varchar(50) NULL,
|
||||||
|
value_source_value varchar(50) NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.observation (
|
||||||
|
observation_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
observation_concept_id integer NOT NULL,
|
||||||
|
observation_date date NOT NULL,
|
||||||
|
observation_datetime datetime NULL,
|
||||||
|
observation_type_concept_id integer NOT NULL,
|
||||||
|
value_as_number float NULL,
|
||||||
|
value_as_string varchar(60) NULL,
|
||||||
|
value_as_concept_id Integer NULL,
|
||||||
|
qualifier_concept_id integer NULL,
|
||||||
|
unit_concept_id integer NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
observation_source_value varchar(50) NULL,
|
||||||
|
observation_source_concept_id integer NULL,
|
||||||
|
unit_source_value varchar(50) NULL,
|
||||||
|
qualifier_source_value varchar(50) NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.death (
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
death_date date NOT NULL,
|
||||||
|
death_datetime datetime NULL,
|
||||||
|
death_type_concept_id integer NULL,
|
||||||
|
cause_concept_id integer NULL,
|
||||||
|
cause_source_value varchar(50) NULL,
|
||||||
|
cause_source_concept_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.note (
|
||||||
|
note_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
note_date date NOT NULL,
|
||||||
|
note_datetime datetime NULL,
|
||||||
|
note_type_concept_id integer NOT NULL,
|
||||||
|
note_class_concept_id integer NOT NULL,
|
||||||
|
note_title varchar(250) NULL,
|
||||||
|
note_text varchar(MAX) NOT NULL,
|
||||||
|
encoding_concept_id integer NOT NULL,
|
||||||
|
language_concept_id integer NOT NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
note_source_value varchar(50) NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.note_nlp (
|
||||||
|
note_nlp_id integer NOT NULL,
|
||||||
|
note_id integer NOT NULL,
|
||||||
|
section_concept_id integer NULL,
|
||||||
|
snippet varchar(250) NULL,
|
||||||
|
"offset" varchar(50) NULL,
|
||||||
|
lexical_variant varchar(250) NOT NULL,
|
||||||
|
note_nlp_concept_id integer NULL,
|
||||||
|
note_nlp_source_concept_id integer NULL,
|
||||||
|
nlp_system varchar(250) NULL,
|
||||||
|
nlp_date date NOT NULL,
|
||||||
|
nlp_datetime datetime NULL,
|
||||||
|
term_exists varchar(1) NULL,
|
||||||
|
term_temporal varchar(50) NULL,
|
||||||
|
term_modifiers varchar(2000) NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.specimen (
|
||||||
|
specimen_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
specimen_concept_id integer NOT NULL,
|
||||||
|
specimen_type_concept_id integer NOT NULL,
|
||||||
|
specimen_date date NOT NULL,
|
||||||
|
specimen_datetime datetime NULL,
|
||||||
|
quantity float NULL,
|
||||||
|
unit_concept_id integer NULL,
|
||||||
|
anatomic_site_concept_id integer NULL,
|
||||||
|
disease_status_concept_id integer NULL,
|
||||||
|
specimen_source_id varchar(50) NULL,
|
||||||
|
specimen_source_value varchar(50) NULL,
|
||||||
|
unit_source_value varchar(50) NULL,
|
||||||
|
anatomic_site_source_value varchar(50) NULL,
|
||||||
|
disease_status_source_value varchar(50) NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.fact_relationship (
|
||||||
|
domain_concept_id_1 integer NOT NULL,
|
||||||
|
fact_id_1 integer NOT NULL,
|
||||||
|
domain_concept_id_2 integer NOT NULL,
|
||||||
|
fact_id_2 integer NOT NULL,
|
||||||
|
relationship_concept_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.location (
|
||||||
|
location_id integer NOT NULL,
|
||||||
|
address_1 varchar(50) NULL,
|
||||||
|
address_2 varchar(50) NULL,
|
||||||
|
city varchar(50) NULL,
|
||||||
|
state varchar(2) NULL,
|
||||||
|
zip varchar(9) NULL,
|
||||||
|
county varchar(20) NULL,
|
||||||
|
location_source_value varchar(50) NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.care_site (
|
||||||
|
care_site_id integer NOT NULL,
|
||||||
|
care_site_name varchar(255) NULL,
|
||||||
|
place_of_service_concept_id integer NULL,
|
||||||
|
location_id integer NULL,
|
||||||
|
care_site_source_value varchar(50) NULL,
|
||||||
|
place_of_service_source_value varchar(50) NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.provider (
|
||||||
|
provider_id integer NOT NULL,
|
||||||
|
provider_name varchar(255) NULL,
|
||||||
|
npi varchar(20) NULL,
|
||||||
|
dea varchar(20) NULL,
|
||||||
|
specialty_concept_id integer NULL,
|
||||||
|
care_site_id integer NULL,
|
||||||
|
year_of_birth integer NULL,
|
||||||
|
gender_concept_id integer NULL,
|
||||||
|
provider_source_value varchar(50) NULL,
|
||||||
|
specialty_source_value varchar(50) NULL,
|
||||||
|
specialty_source_concept_id integer NULL,
|
||||||
|
gender_source_value varchar(50) NULL,
|
||||||
|
gender_source_concept_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.payer_plan_period (
|
||||||
|
payer_plan_period_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
payer_plan_period_start_date date NOT NULL,
|
||||||
|
payer_plan_period_end_date date NOT NULL,
|
||||||
|
payer_concept_id integer NULL,
|
||||||
|
payer_source_value varchar(50) NULL,
|
||||||
|
payer_source_concept_id integer NULL,
|
||||||
|
plan_concept_id integer NULL,
|
||||||
|
plan_source_value varchar(50) NULL,
|
||||||
|
plan_source_concept_id integer NULL,
|
||||||
|
sponsor_concept_id integer NULL,
|
||||||
|
sponsor_source_value varchar(50) NULL,
|
||||||
|
sponsor_source_concept_id integer NULL,
|
||||||
|
family_source_value varchar(50) NULL,
|
||||||
|
stop_reason_concept_id integer NULL,
|
||||||
|
stop_reason_source_value varchar(50) NULL,
|
||||||
|
stop_reason_source_concept_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.cost (
|
||||||
|
cost_id integer NOT NULL,
|
||||||
|
cost_event_id integer NOT NULL,
|
||||||
|
cost_domain_id varchar(20) NOT NULL,
|
||||||
|
cost_type_concept_id integer NOT NULL,
|
||||||
|
currency_concept_id integer NULL,
|
||||||
|
total_charge float NULL,
|
||||||
|
total_cost float NULL,
|
||||||
|
total_paid float NULL,
|
||||||
|
paid_by_payer float NULL,
|
||||||
|
paid_by_patient float NULL,
|
||||||
|
paid_patient_copay float NULL,
|
||||||
|
paid_patient_coinsurance float NULL,
|
||||||
|
paid_patient_deductible float NULL,
|
||||||
|
paid_by_primary float NULL,
|
||||||
|
paid_ingredient_cost float NULL,
|
||||||
|
paid_dispensing_fee float NULL,
|
||||||
|
payer_plan_period_id integer NULL,
|
||||||
|
amount_allowed float NULL,
|
||||||
|
revenue_code_concept_id integer NULL,
|
||||||
|
revenue_code_source_value varchar(50) NULL,
|
||||||
|
drg_concept_id integer NULL,
|
||||||
|
drg_source_value varchar(3) NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.drug_era (
|
||||||
|
drug_era_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
drug_concept_id integer NOT NULL,
|
||||||
|
drug_era_start_date date NOT NULL,
|
||||||
|
drug_era_end_date date NOT NULL,
|
||||||
|
drug_exposure_count integer NULL,
|
||||||
|
gap_days integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.dose_era (
|
||||||
|
dose_era_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
drug_concept_id integer NOT NULL,
|
||||||
|
unit_concept_id integer NOT NULL,
|
||||||
|
dose_value float NOT NULL,
|
||||||
|
dose_era_start_date date NOT NULL,
|
||||||
|
dose_era_end_date date NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.condition_era (
|
||||||
|
condition_era_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
condition_concept_id integer NOT NULL,
|
||||||
|
condition_era_start_date date NOT NULL,
|
||||||
|
condition_era_end_date date NOT NULL,
|
||||||
|
condition_occurrence_count integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.metadata (
|
||||||
|
metadata_concept_id integer NOT NULL,
|
||||||
|
metadata_type_concept_id integer NOT NULL,
|
||||||
|
name varchar(250) NOT NULL,
|
||||||
|
value_as_string varchar(250) NULL,
|
||||||
|
value_as_concept_id integer NULL,
|
||||||
|
metadata_date date NULL,
|
||||||
|
metadata_datetime datetime NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.cdm_source (
|
||||||
|
cdm_source_name varchar(255) NOT NULL,
|
||||||
|
cdm_source_abbreviation varchar(25) NULL,
|
||||||
|
cdm_holder varchar(255) NULL,
|
||||||
|
source_description varchar(MAX) NULL,
|
||||||
|
source_documentation_reference varchar(255) NULL,
|
||||||
|
cdm_etl_reference varchar(255) NULL,
|
||||||
|
source_release_date date NULL,
|
||||||
|
cdm_release_date date NULL,
|
||||||
|
cdm_version varchar(10) NULL,
|
||||||
|
vocabulary_version varchar(20) NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.concept (
|
||||||
|
concept_id integer NOT NULL,
|
||||||
|
concept_name varchar(255) NOT NULL,
|
||||||
|
domain_id varchar(20) NOT NULL,
|
||||||
|
vocabulary_id varchar(20) NOT NULL,
|
||||||
|
concept_class_id varchar(20) NOT NULL,
|
||||||
|
standard_concept varchar(1) NULL,
|
||||||
|
concept_code varchar(50) NOT NULL,
|
||||||
|
valid_start_date date NOT NULL,
|
||||||
|
valid_end_date date NOT NULL,
|
||||||
|
invalid_reason varchar(1) NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.vocabulary (
|
||||||
|
vocabulary_id varchar(20) NOT NULL,
|
||||||
|
vocabulary_name varchar(255) NOT NULL,
|
||||||
|
vocabulary_reference varchar(255) NOT NULL,
|
||||||
|
vocabulary_version varchar(255) NULL,
|
||||||
|
vocabulary_concept_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema."DOMAIN" (
|
||||||
|
domain_id varchar(20) NOT NULL,
|
||||||
|
domain_name varchar(255) NOT NULL,
|
||||||
|
domain_concept_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.concept_class (
|
||||||
|
concept_class_id varchar(20) NOT NULL,
|
||||||
|
concept_class_name varchar(255) NOT NULL,
|
||||||
|
concept_class_concept_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.concept_relationship (
|
||||||
|
concept_id_1 integer NOT NULL,
|
||||||
|
concept_id_2 integer NOT NULL,
|
||||||
|
relationship_id varchar(20) NOT NULL,
|
||||||
|
valid_start_date date NOT NULL,
|
||||||
|
valid_end_date date NOT NULL,
|
||||||
|
invalid_reason varchar(1) NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.relationship (
|
||||||
|
relationship_id varchar(20) NOT NULL,
|
||||||
|
relationship_name varchar(255) NOT NULL,
|
||||||
|
is_hierarchical varchar(1) NOT NULL,
|
||||||
|
defines_ancestry varchar(1) NOT NULL,
|
||||||
|
reverse_relationship_id varchar(20) NOT NULL,
|
||||||
|
relationship_concept_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.concept_synonym (
|
||||||
|
concept_id integer NOT NULL,
|
||||||
|
concept_synonym_name varchar(1000) NOT NULL,
|
||||||
|
language_concept_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.concept_ancestor (
|
||||||
|
ancestor_concept_id integer NOT NULL,
|
||||||
|
descendant_concept_id integer NOT NULL,
|
||||||
|
min_levels_of_separation integer NOT NULL,
|
||||||
|
max_levels_of_separation integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.source_to_concept_map (
|
||||||
|
source_code varchar(50) NOT NULL,
|
||||||
|
source_concept_id integer NOT NULL,
|
||||||
|
source_vocabulary_id varchar(20) NOT NULL,
|
||||||
|
source_code_description varchar(255) NULL,
|
||||||
|
target_concept_id integer NOT NULL,
|
||||||
|
target_vocabulary_id varchar(20) NOT NULL,
|
||||||
|
valid_start_date date NOT NULL,
|
||||||
|
valid_end_date date NOT NULL,
|
||||||
|
invalid_reason varchar(1) NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.drug_strength (
|
||||||
|
drug_concept_id integer NOT NULL,
|
||||||
|
ingredient_concept_id integer NOT NULL,
|
||||||
|
amount_value float NULL,
|
||||||
|
amount_unit_concept_id integer NULL,
|
||||||
|
numerator_value float NULL,
|
||||||
|
numerator_unit_concept_id integer NULL,
|
||||||
|
denominator_value float NULL,
|
||||||
|
denominator_unit_concept_id integer NULL,
|
||||||
|
box_size integer NULL,
|
||||||
|
valid_start_date date NOT NULL,
|
||||||
|
valid_end_date date NOT NULL,
|
||||||
|
invalid_reason varchar(1) NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.cohort_definition (
|
||||||
|
cohort_definition_id integer NOT NULL,
|
||||||
|
cohort_definition_name varchar(255) NOT NULL,
|
||||||
|
cohort_definition_description varchar(MAX) NULL,
|
||||||
|
definition_type_concept_id integer NOT NULL,
|
||||||
|
cohort_definition_syntax varchar(MAX) NULL,
|
||||||
|
subject_concept_id integer NOT NULL,
|
||||||
|
cohort_initiation_date date NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.attribute_definition (
|
||||||
|
attribute_definition_id integer NOT NULL,
|
||||||
|
attribute_name varchar(255) NOT NULL,
|
||||||
|
attribute_description varchar(MAX) NULL,
|
||||||
|
attribute_type_concept_id integer NOT NULL,
|
||||||
|
attribute_syntax varchar(MAX) NULL );
|
||||||
|
|
@ -0,0 +1,98 @@
|
||||||
|
/*iris OMOP CDM Indices
|
||||||
|
There are no unique indices created because it is assumed that the primary key constraints have been run prior to
|
||||||
|
implementing indices.
|
||||||
|
*/
|
||||||
|
/************************
|
||||||
|
Standardized clinical data
|
||||||
|
************************/
|
||||||
|
CREATE INDEX idx_person_id ON @cdmDatabaseSchema.person (person_id ASC);
|
||||||
|
CREATE INDEX idx_gender ON @cdmDatabaseSchema.person (gender_concept_id ASC);
|
||||||
|
CREATE INDEX idx_observation_period_id_1 ON @cdmDatabaseSchema.observation_period (person_id ASC);
|
||||||
|
CREATE INDEX idx_visit_person_id_1 ON @cdmDatabaseSchema.visit_occurrence (person_id ASC);
|
||||||
|
CREATE INDEX idx_visit_concept_id_1 ON @cdmDatabaseSchema.visit_occurrence (visit_concept_id ASC);
|
||||||
|
CREATE INDEX idx_visit_det_person_id_1 ON @cdmDatabaseSchema.visit_detail (person_id ASC);
|
||||||
|
CREATE INDEX idx_visit_det_concept_id_1 ON @cdmDatabaseSchema.visit_detail (visit_detail_concept_id ASC);
|
||||||
|
CREATE INDEX idx_visit_det_occ_id ON @cdmDatabaseSchema.visit_detail (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_condition_person_id_1 ON @cdmDatabaseSchema.condition_occurrence (person_id ASC);
|
||||||
|
CREATE INDEX idx_condition_concept_id_1 ON @cdmDatabaseSchema.condition_occurrence (condition_concept_id ASC);
|
||||||
|
CREATE INDEX idx_condition_visit_id_1 ON @cdmDatabaseSchema.condition_occurrence (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_drug_person_id_1 ON @cdmDatabaseSchema.drug_exposure (person_id ASC);
|
||||||
|
CREATE INDEX idx_drug_concept_id_1 ON @cdmDatabaseSchema.drug_exposure (drug_concept_id ASC);
|
||||||
|
CREATE INDEX idx_drug_visit_id_1 ON @cdmDatabaseSchema.drug_exposure (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_procedure_person_id_1 ON @cdmDatabaseSchema.procedure_occurrence (person_id ASC);
|
||||||
|
CREATE INDEX idx_procedure_concept_id_1 ON @cdmDatabaseSchema.procedure_occurrence (procedure_concept_id ASC);
|
||||||
|
CREATE INDEX idx_procedure_visit_id_1 ON @cdmDatabaseSchema.procedure_occurrence (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_device_person_id_1 ON @cdmDatabaseSchema.device_exposure (person_id ASC);
|
||||||
|
CREATE INDEX idx_device_concept_id_1 ON @cdmDatabaseSchema.device_exposure (device_concept_id ASC);
|
||||||
|
CREATE INDEX idx_device_visit_id_1 ON @cdmDatabaseSchema.device_exposure (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_measurement_person_id_1 ON @cdmDatabaseSchema.measurement (person_id ASC);
|
||||||
|
CREATE INDEX idx_measurement_concept_id_1 ON @cdmDatabaseSchema.measurement (measurement_concept_id ASC);
|
||||||
|
CREATE INDEX idx_measurement_visit_id_1 ON @cdmDatabaseSchema.measurement (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_observation_person_id_1 ON @cdmDatabaseSchema.observation (person_id ASC);
|
||||||
|
CREATE INDEX idx_observation_concept_id_1 ON @cdmDatabaseSchema.observation (observation_concept_id ASC);
|
||||||
|
CREATE INDEX idx_observation_visit_id_1 ON @cdmDatabaseSchema.observation (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_death_person_id_1 ON @cdmDatabaseSchema.death (person_id ASC);
|
||||||
|
CREATE INDEX idx_note_person_id_1 ON @cdmDatabaseSchema.note (person_id ASC);
|
||||||
|
CREATE INDEX idx_note_concept_id_1 ON @cdmDatabaseSchema.note (note_type_concept_id ASC);
|
||||||
|
CREATE INDEX idx_note_visit_id_1 ON @cdmDatabaseSchema.note (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_note_nlp_note_id_1 ON @cdmDatabaseSchema.note_nlp (note_id ASC);
|
||||||
|
CREATE INDEX idx_note_nlp_concept_id_1 ON @cdmDatabaseSchema.note_nlp (note_nlp_concept_id ASC);
|
||||||
|
CREATE INDEX idx_specimen_person_id_1 ON @cdmDatabaseSchema.specimen (person_id ASC);
|
||||||
|
CREATE INDEX idx_specimen_concept_id_1 ON @cdmDatabaseSchema.specimen (specimen_concept_id ASC);
|
||||||
|
CREATE INDEX idx_fact_relationship_id1 ON @cdmDatabaseSchema.fact_relationship (domain_concept_id_1 ASC);
|
||||||
|
CREATE INDEX idx_fact_relationship_id2 ON @cdmDatabaseSchema.fact_relationship (domain_concept_id_2 ASC);
|
||||||
|
CREATE INDEX idx_fact_relationship_id3 ON @cdmDatabaseSchema.fact_relationship (relationship_concept_id ASC);
|
||||||
|
/************************
|
||||||
|
Standardized health system data
|
||||||
|
************************/
|
||||||
|
CREATE INDEX idx_location_id_1 ON @cdmDatabaseSchema.location (location_id ASC);
|
||||||
|
CREATE INDEX idx_care_site_id_1 ON @cdmDatabaseSchema.care_site (care_site_id ASC);
|
||||||
|
CREATE INDEX idx_provider_id_1 ON @cdmDatabaseSchema.provider (provider_id ASC);
|
||||||
|
/************************
|
||||||
|
Standardized health economics
|
||||||
|
************************/
|
||||||
|
CREATE INDEX idx_period_person_id_1 ON @cdmDatabaseSchema.payer_plan_period (person_id ASC);
|
||||||
|
CREATE INDEX idx_cost_event_id ON @cdmDatabaseSchema.cost (cost_event_id ASC);
|
||||||
|
/************************
|
||||||
|
Standardized derived elements
|
||||||
|
************************/
|
||||||
|
CREATE INDEX idx_drug_era_person_id_1 ON @cdmDatabaseSchema.drug_era (person_id ASC);
|
||||||
|
CREATE INDEX idx_drug_era_concept_id_1 ON @cdmDatabaseSchema.drug_era (drug_concept_id ASC);
|
||||||
|
CREATE INDEX idx_dose_era_person_id_1 ON @cdmDatabaseSchema.dose_era (person_id ASC);
|
||||||
|
CREATE INDEX idx_dose_era_concept_id_1 ON @cdmDatabaseSchema.dose_era (drug_concept_id ASC);
|
||||||
|
CREATE INDEX idx_condition_era_person_id_1 ON @cdmDatabaseSchema.condition_era (person_id ASC);
|
||||||
|
CREATE INDEX idx_condition_era_concept_id_1 ON @cdmDatabaseSchema.condition_era (condition_concept_id ASC);
|
||||||
|
/**************************
|
||||||
|
Standardized meta-data
|
||||||
|
***************************/
|
||||||
|
CREATE INDEX idx_metadata_concept_id_1 ON @cdmDatabaseSchema.metadata (metadata_concept_id ASC);
|
||||||
|
/**************************
|
||||||
|
Standardized vocabularies
|
||||||
|
***************************/
|
||||||
|
CREATE INDEX idx_concept_concept_id ON @cdmDatabaseSchema.concept (concept_id ASC);
|
||||||
|
CREATE INDEX idx_concept_code ON @cdmDatabaseSchema.concept (concept_code ASC);
|
||||||
|
CREATE INDEX idx_concept_vocabulary_id ON @cdmDatabaseSchema.concept (vocabulary_id ASC);
|
||||||
|
CREATE INDEX idx_concept_domain_id ON @cdmDatabaseSchema.concept (domain_id ASC);
|
||||||
|
CREATE INDEX idx_concept_class_id ON @cdmDatabaseSchema.concept (concept_class_id ASC);
|
||||||
|
CREATE INDEX idx_vocabulary_vocabulary_id ON @cdmDatabaseSchema.vocabulary (vocabulary_id ASC);
|
||||||
|
CREATE INDEX idx_domain_domain_id ON @cdmDatabaseSchema."DOMAIN" (domain_id ASC);
|
||||||
|
CREATE INDEX idx_concept_class_class_id ON @cdmDatabaseSchema.concept_class (concept_class_id ASC);
|
||||||
|
CREATE INDEX idx_concept_relationship_id_1 ON @cdmDatabaseSchema.concept_relationship (concept_id_1 ASC);
|
||||||
|
CREATE INDEX idx_concept_relationship_id_2 ON @cdmDatabaseSchema.concept_relationship (concept_id_2 ASC);
|
||||||
|
CREATE INDEX idx_concept_relationship_id_3 ON @cdmDatabaseSchema.concept_relationship (relationship_id ASC);
|
||||||
|
CREATE INDEX idx_relationship_rel_id ON @cdmDatabaseSchema.relationship (relationship_id ASC);
|
||||||
|
CREATE INDEX idx_concept_synonym_id ON @cdmDatabaseSchema.concept_synonym (concept_id ASC);
|
||||||
|
CREATE INDEX idx_concept_ancestor_id_1 ON @cdmDatabaseSchema.concept_ancestor (ancestor_concept_id ASC);
|
||||||
|
CREATE INDEX idx_concept_ancestor_id_2 ON @cdmDatabaseSchema.concept_ancestor (descendant_concept_id ASC);
|
||||||
|
CREATE INDEX idx_source_to_concept_map_3 ON @cdmDatabaseSchema.source_to_concept_map (target_concept_id ASC);
|
||||||
|
CREATE INDEX idx_source_to_concept_map_1 ON @cdmDatabaseSchema.source_to_concept_map (source_vocabulary_id ASC);
|
||||||
|
CREATE INDEX idx_source_to_concept_map_2 ON @cdmDatabaseSchema.source_to_concept_map (target_vocabulary_id ASC);
|
||||||
|
CREATE INDEX idx_source_to_concept_map_c ON @cdmDatabaseSchema.source_to_concept_map (source_code ASC);
|
||||||
|
CREATE INDEX idx_drug_strength_id_1 ON @cdmDatabaseSchema.drug_strength (drug_concept_id ASC);
|
||||||
|
CREATE INDEX idx_drug_strength_id_2 ON @cdmDatabaseSchema.drug_strength (ingredient_concept_id ASC);
|
||||||
|
--Additional v6.0 indices
|
||||||
|
--CREATE CLUSTERED INDEX idx_survey_person_id_1 ON @cdmDatabaseSchema.survey_conduct (person_id ASC);
|
||||||
|
--CREATE CLUSTERED INDEX idx_episode_person_id_1 ON @cdmDatabaseSchema.episode (person_id ASC);
|
||||||
|
--CREATE INDEX idx_episode_concept_id_1 ON @cdmDatabaseSchema.episode (episode_concept_id ASC);
|
||||||
|
--CREATE CLUSTERED INDEX idx_episode_event_id_1 ON @cdmDatabaseSchema.episode_event (episode_id ASC);
|
||||||
|
--CREATE INDEX idx_ee_field_concept_id_1 ON @cdmDatabaseSchema.episode_event (event_field_concept_id ASC);
|
||||||
|
|
@ -0,0 +1,27 @@
|
||||||
|
--iris CDM Primary Key Constraints for OMOP Common Data Model 5.3
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT xpk_person PRIMARY KEY (person_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation_period ADD CONSTRAINT xpk_observation_period PRIMARY KEY (observation_period_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT xpk_visit_occurrence PRIMARY KEY (visit_occurrence_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT xpk_visit_detail PRIMARY KEY (visit_detail_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT xpk_condition_occurrence PRIMARY KEY (condition_occurrence_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT xpk_drug_exposure PRIMARY KEY (drug_exposure_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT xpk_procedure_occurrence PRIMARY KEY (procedure_occurrence_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT xpk_device_exposure PRIMARY KEY (device_exposure_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT xpk_measurement PRIMARY KEY (measurement_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT xpk_observation PRIMARY KEY (observation_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT xpk_note PRIMARY KEY (note_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note_nlp ADD CONSTRAINT xpk_note_nlp PRIMARY KEY (note_nlp_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT xpk_specimen PRIMARY KEY (specimen_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.location ADD CONSTRAINT xpk_location PRIMARY KEY (location_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.care_site ADD CONSTRAINT xpk_care_site PRIMARY KEY (care_site_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT xpk_provider PRIMARY KEY (provider_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT xpk_payer_plan_period PRIMARY KEY (payer_plan_period_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT xpk_cost PRIMARY KEY (cost_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_era ADD CONSTRAINT xpk_drug_era PRIMARY KEY (drug_era_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.dose_era ADD CONSTRAINT xpk_dose_era PRIMARY KEY (dose_era_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.condition_era ADD CONSTRAINT xpk_condition_era PRIMARY KEY (condition_era_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept ADD CONSTRAINT xpk_concept PRIMARY KEY (concept_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.vocabulary ADD CONSTRAINT xpk_vocabulary PRIMARY KEY (vocabulary_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema."DOMAIN" ADD CONSTRAINT xpk_domain PRIMARY KEY (domain_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_class ADD CONSTRAINT xpk_concept_class PRIMARY KEY (concept_class_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.relationship ADD CONSTRAINT xpk_relationship PRIMARY KEY (relationship_id);
|
||||||
|
|
@ -0,0 +1,177 @@
|
||||||
|
--iris CDM Foreign Key Constraints for OMOP Common Data Model 5.4
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_gender_concept_id FOREIGN KEY (gender_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_race_concept_id FOREIGN KEY (race_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_ethnicity_concept_id FOREIGN KEY (ethnicity_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_location_id FOREIGN KEY (location_id) REFERENCES @cdmDatabaseSchema.LOCATION (LOCATION_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_race_source_concept_id FOREIGN KEY (race_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_ethnicity_source_concept_id FOREIGN KEY (ethnicity_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation_period ADD CONSTRAINT fpk_observation_period_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation_period ADD CONSTRAINT fpk_observation_period_period_type_concept_id FOREIGN KEY (period_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_visit_concept_id FOREIGN KEY (visit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_visit_type_concept_id FOREIGN KEY (visit_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_visit_source_concept_id FOREIGN KEY (visit_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_admitted_from_concept_id FOREIGN KEY (admitted_from_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_discharged_to_concept_id FOREIGN KEY (discharged_to_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_preceding_visit_occurrence_id FOREIGN KEY (preceding_visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_visit_detail_concept_id FOREIGN KEY (visit_detail_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_visit_detail_type_concept_id FOREIGN KEY (visit_detail_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_visit_detail_source_concept_id FOREIGN KEY (visit_detail_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_admitted_from_concept_id FOREIGN KEY (admitted_from_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_discharged_to_concept_id FOREIGN KEY (discharged_to_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_preceding_visit_detail_id FOREIGN KEY (preceding_visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_parent_visit_detail_id FOREIGN KEY (parent_visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_condition_type_concept_id FOREIGN KEY (condition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_condition_status_concept_id FOREIGN KEY (condition_status_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_condition_source_concept_id FOREIGN KEY (condition_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_drug_type_concept_id FOREIGN KEY (drug_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_route_concept_id FOREIGN KEY (route_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_drug_source_concept_id FOREIGN KEY (drug_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_procedure_concept_id FOREIGN KEY (procedure_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_procedure_type_concept_id FOREIGN KEY (procedure_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_modifier_concept_id FOREIGN KEY (modifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_procedure_source_concept_id FOREIGN KEY (procedure_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_device_concept_id FOREIGN KEY (device_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_device_type_concept_id FOREIGN KEY (device_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_device_source_concept_id FOREIGN KEY (device_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_unit_source_concept_id FOREIGN KEY (unit_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_measurement_concept_id FOREIGN KEY (measurement_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_measurement_type_concept_id FOREIGN KEY (measurement_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_operator_concept_id FOREIGN KEY (operator_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_measurement_source_concept_id FOREIGN KEY (measurement_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_unit_source_concept_id FOREIGN KEY (unit_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_meas_event_field_concept_id FOREIGN KEY (meas_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_observation_concept_id FOREIGN KEY (observation_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_observation_type_concept_id FOREIGN KEY (observation_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_qualifier_concept_id FOREIGN KEY (qualifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_observation_source_concept_id FOREIGN KEY (observation_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_obs_event_field_concept_id FOREIGN KEY (obs_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.death ADD CONSTRAINT fpk_death_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.death ADD CONSTRAINT fpk_death_death_type_concept_id FOREIGN KEY (death_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.death ADD CONSTRAINT fpk_death_cause_concept_id FOREIGN KEY (cause_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.death ADD CONSTRAINT fpk_death_cause_source_concept_id FOREIGN KEY (cause_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_note_type_concept_id FOREIGN KEY (note_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_note_class_concept_id FOREIGN KEY (note_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_encoding_concept_id FOREIGN KEY (encoding_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_language_concept_id FOREIGN KEY (language_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_note_event_field_concept_id FOREIGN KEY (note_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note_nlp ADD CONSTRAINT fpk_note_nlp_section_concept_id FOREIGN KEY (section_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note_nlp ADD CONSTRAINT fpk_note_nlp_note_nlp_concept_id FOREIGN KEY (note_nlp_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note_nlp ADD CONSTRAINT fpk_note_nlp_note_nlp_source_concept_id FOREIGN KEY (note_nlp_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_specimen_concept_id FOREIGN KEY (specimen_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_specimen_type_concept_id FOREIGN KEY (specimen_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_anatomic_site_concept_id FOREIGN KEY (anatomic_site_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_disease_status_concept_id FOREIGN KEY (disease_status_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.fact_relationship ADD CONSTRAINT fpk_fact_relationship_domain_concept_id_1 FOREIGN KEY (domain_concept_id_1) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.fact_relationship ADD CONSTRAINT fpk_fact_relationship_domain_concept_id_2 FOREIGN KEY (domain_concept_id_2) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.fact_relationship ADD CONSTRAINT fpk_fact_relationship_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.location ADD CONSTRAINT fpk_location_country_concept_id FOREIGN KEY (country_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.care_site ADD CONSTRAINT fpk_care_site_place_of_service_concept_id FOREIGN KEY (place_of_service_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.care_site ADD CONSTRAINT fpk_care_site_location_id FOREIGN KEY (location_id) REFERENCES @cdmDatabaseSchema.LOCATION (LOCATION_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT fpk_provider_specialty_concept_id FOREIGN KEY (specialty_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT fpk_provider_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT fpk_provider_gender_concept_id FOREIGN KEY (gender_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT fpk_provider_specialty_source_concept_id FOREIGN KEY (specialty_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT fpk_provider_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_payer_concept_id FOREIGN KEY (payer_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_payer_source_concept_id FOREIGN KEY (payer_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_plan_concept_id FOREIGN KEY (plan_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_plan_source_concept_id FOREIGN KEY (plan_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_sponsor_concept_id FOREIGN KEY (sponsor_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_sponsor_source_concept_id FOREIGN KEY (sponsor_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_stop_reason_concept_id FOREIGN KEY (stop_reason_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_stop_reason_source_concept_id FOREIGN KEY (stop_reason_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT fpk_cost_cost_domain_id FOREIGN KEY (cost_domain_id) REFERENCES @cdmDatabaseSchema."DOMAIN" (DOMAIN_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT fpk_cost_cost_type_concept_id FOREIGN KEY (cost_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT fpk_cost_currency_concept_id FOREIGN KEY (currency_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT fpk_cost_revenue_code_concept_id FOREIGN KEY (revenue_code_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT fpk_cost_drg_concept_id FOREIGN KEY (drg_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_era ADD CONSTRAINT fpk_drug_era_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_era ADD CONSTRAINT fpk_drug_era_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.dose_era ADD CONSTRAINT fpk_dose_era_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.dose_era ADD CONSTRAINT fpk_dose_era_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.dose_era ADD CONSTRAINT fpk_dose_era_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.condition_era ADD CONSTRAINT fpk_condition_era_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.condition_era ADD CONSTRAINT fpk_condition_era_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.episode ADD CONSTRAINT fpk_episode_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.episode ADD CONSTRAINT fpk_episode_episode_concept_id FOREIGN KEY (episode_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.episode ADD CONSTRAINT fpk_episode_episode_object_concept_id FOREIGN KEY (episode_object_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.episode ADD CONSTRAINT fpk_episode_episode_type_concept_id FOREIGN KEY (episode_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.episode ADD CONSTRAINT fpk_episode_episode_source_concept_id FOREIGN KEY (episode_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.episode_event ADD CONSTRAINT fpk_episode_event_episode_id FOREIGN KEY (episode_id) REFERENCES @cdmDatabaseSchema.EPISODE (EPISODE_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.episode_event ADD CONSTRAINT fpk_episode_event_episode_event_field_concept_id FOREIGN KEY (episode_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.metadata ADD CONSTRAINT fpk_metadata_metadata_concept_id FOREIGN KEY (metadata_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.metadata ADD CONSTRAINT fpk_metadata_metadata_type_concept_id FOREIGN KEY (metadata_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.metadata ADD CONSTRAINT fpk_metadata_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cdm_source ADD CONSTRAINT fpk_cdm_source_cdm_version_concept_id FOREIGN KEY (cdm_version_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept ADD CONSTRAINT fpk_concept_domain_id FOREIGN KEY (domain_id) REFERENCES @cdmDatabaseSchema."DOMAIN" (DOMAIN_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept ADD CONSTRAINT fpk_concept_vocabulary_id FOREIGN KEY (vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept ADD CONSTRAINT fpk_concept_concept_class_id FOREIGN KEY (concept_class_id) REFERENCES @cdmDatabaseSchema.CONCEPT_CLASS (CONCEPT_CLASS_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.vocabulary ADD CONSTRAINT fpk_vocabulary_vocabulary_concept_id FOREIGN KEY (vocabulary_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema."DOMAIN" ADD CONSTRAINT fpk_domain_domain_concept_id FOREIGN KEY (domain_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_class ADD CONSTRAINT fpk_concept_class_concept_class_concept_id FOREIGN KEY (concept_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_relationship ADD CONSTRAINT fpk_concept_relationship_concept_id_1 FOREIGN KEY (concept_id_1) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_relationship ADD CONSTRAINT fpk_concept_relationship_concept_id_2 FOREIGN KEY (concept_id_2) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_relationship ADD CONSTRAINT fpk_concept_relationship_relationship_id FOREIGN KEY (relationship_id) REFERENCES @cdmDatabaseSchema.RELATIONSHIP (RELATIONSHIP_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.relationship ADD CONSTRAINT fpk_relationship_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_synonym ADD CONSTRAINT fpk_concept_synonym_concept_id FOREIGN KEY (concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_synonym ADD CONSTRAINT fpk_concept_synonym_language_concept_id FOREIGN KEY (language_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_ancestor ADD CONSTRAINT fpk_concept_ancestor_ancestor_concept_id FOREIGN KEY (ancestor_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_ancestor ADD CONSTRAINT fpk_concept_ancestor_descendant_concept_id FOREIGN KEY (descendant_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_source_concept_id FOREIGN KEY (source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_target_concept_id FOREIGN KEY (target_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_target_vocabulary_id FOREIGN KEY (target_vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT fpk_drug_strength_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT fpk_drug_strength_ingredient_concept_id FOREIGN KEY (ingredient_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT fpk_drug_strength_amount_unit_concept_id FOREIGN KEY (amount_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT fpk_drug_strength_numerator_unit_concept_id FOREIGN KEY (numerator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT fpk_drug_strength_denominator_unit_concept_id FOREIGN KEY (denominator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cohort_definition ADD CONSTRAINT fpk_cohort_definition_definition_type_concept_id FOREIGN KEY (definition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cohort_definition ADD CONSTRAINT fpk_cohort_definition_subject_concept_id FOREIGN KEY (subject_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||||
|
|
@ -0,0 +1,511 @@
|
||||||
|
--iris CDM DDL Specification for OMOP Common Data Model 5.4
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.person (
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
gender_concept_id integer NOT NULL,
|
||||||
|
year_of_birth integer NOT NULL,
|
||||||
|
month_of_birth integer NULL,
|
||||||
|
day_of_birth integer NULL,
|
||||||
|
birth_datetime datetime NULL,
|
||||||
|
race_concept_id integer NOT NULL,
|
||||||
|
ethnicity_concept_id integer NOT NULL,
|
||||||
|
location_id integer NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
care_site_id integer NULL,
|
||||||
|
person_source_value varchar(50) NULL,
|
||||||
|
gender_source_value varchar(50) NULL,
|
||||||
|
gender_source_concept_id integer NULL,
|
||||||
|
race_source_value varchar(50) NULL,
|
||||||
|
race_source_concept_id integer NULL,
|
||||||
|
ethnicity_source_value varchar(50) NULL,
|
||||||
|
ethnicity_source_concept_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.observation_period (
|
||||||
|
observation_period_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
observation_period_start_date date NOT NULL,
|
||||||
|
observation_period_end_date date NOT NULL,
|
||||||
|
period_type_concept_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.visit_occurrence (
|
||||||
|
visit_occurrence_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
visit_concept_id integer NOT NULL,
|
||||||
|
visit_start_date date NOT NULL,
|
||||||
|
visit_start_datetime datetime NULL,
|
||||||
|
visit_end_date date NOT NULL,
|
||||||
|
visit_end_datetime datetime NULL,
|
||||||
|
visit_type_concept_id Integer NOT NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
care_site_id integer NULL,
|
||||||
|
visit_source_value varchar(50) NULL,
|
||||||
|
visit_source_concept_id integer NULL,
|
||||||
|
admitted_from_concept_id integer NULL,
|
||||||
|
admitted_from_source_value varchar(50) NULL,
|
||||||
|
discharged_to_concept_id integer NULL,
|
||||||
|
discharged_to_source_value varchar(50) NULL,
|
||||||
|
preceding_visit_occurrence_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.visit_detail (
|
||||||
|
visit_detail_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
visit_detail_concept_id integer NOT NULL,
|
||||||
|
visit_detail_start_date date NOT NULL,
|
||||||
|
visit_detail_start_datetime datetime NULL,
|
||||||
|
visit_detail_end_date date NOT NULL,
|
||||||
|
visit_detail_end_datetime datetime NULL,
|
||||||
|
visit_detail_type_concept_id integer NOT NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
care_site_id integer NULL,
|
||||||
|
visit_detail_source_value varchar(50) NULL,
|
||||||
|
visit_detail_source_concept_id Integer NULL,
|
||||||
|
admitted_from_concept_id Integer NULL,
|
||||||
|
admitted_from_source_value varchar(50) NULL,
|
||||||
|
discharged_to_source_value varchar(50) NULL,
|
||||||
|
discharged_to_concept_id integer NULL,
|
||||||
|
preceding_visit_detail_id integer NULL,
|
||||||
|
parent_visit_detail_id integer NULL,
|
||||||
|
visit_occurrence_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.condition_occurrence (
|
||||||
|
condition_occurrence_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
condition_concept_id integer NOT NULL,
|
||||||
|
condition_start_date date NOT NULL,
|
||||||
|
condition_start_datetime datetime NULL,
|
||||||
|
condition_end_date date NULL,
|
||||||
|
condition_end_datetime datetime NULL,
|
||||||
|
condition_type_concept_id integer NOT NULL,
|
||||||
|
condition_status_concept_id integer NULL,
|
||||||
|
stop_reason varchar(20) NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
condition_source_value varchar(50) NULL,
|
||||||
|
condition_source_concept_id integer NULL,
|
||||||
|
condition_status_source_value varchar(50) NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.drug_exposure (
|
||||||
|
drug_exposure_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
drug_concept_id integer NOT NULL,
|
||||||
|
drug_exposure_start_date date NOT NULL,
|
||||||
|
drug_exposure_start_datetime datetime NULL,
|
||||||
|
drug_exposure_end_date date NOT NULL,
|
||||||
|
drug_exposure_end_datetime datetime NULL,
|
||||||
|
verbatim_end_date date NULL,
|
||||||
|
drug_type_concept_id integer NOT NULL,
|
||||||
|
stop_reason varchar(20) NULL,
|
||||||
|
refills integer NULL,
|
||||||
|
quantity float NULL,
|
||||||
|
days_supply integer NULL,
|
||||||
|
sig varchar(MAX) NULL,
|
||||||
|
route_concept_id integer NULL,
|
||||||
|
lot_number varchar(50) NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
drug_source_value varchar(50) NULL,
|
||||||
|
drug_source_concept_id integer NULL,
|
||||||
|
route_source_value varchar(50) NULL,
|
||||||
|
dose_unit_source_value varchar(50) NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.procedure_occurrence (
|
||||||
|
procedure_occurrence_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
procedure_concept_id integer NOT NULL,
|
||||||
|
procedure_date date NOT NULL,
|
||||||
|
procedure_datetime datetime NULL,
|
||||||
|
procedure_end_date date NULL,
|
||||||
|
procedure_end_datetime datetime NULL,
|
||||||
|
procedure_type_concept_id integer NOT NULL,
|
||||||
|
modifier_concept_id integer NULL,
|
||||||
|
quantity integer NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
procedure_source_value varchar(50) NULL,
|
||||||
|
procedure_source_concept_id integer NULL,
|
||||||
|
modifier_source_value varchar(50) NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.device_exposure (
|
||||||
|
device_exposure_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
device_concept_id integer NOT NULL,
|
||||||
|
device_exposure_start_date date NOT NULL,
|
||||||
|
device_exposure_start_datetime datetime NULL,
|
||||||
|
device_exposure_end_date date NULL,
|
||||||
|
device_exposure_end_datetime datetime NULL,
|
||||||
|
device_type_concept_id integer NOT NULL,
|
||||||
|
unique_device_id varchar(255) NULL,
|
||||||
|
production_id varchar(255) NULL,
|
||||||
|
quantity integer NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
device_source_value varchar(50) NULL,
|
||||||
|
device_source_concept_id integer NULL,
|
||||||
|
unit_concept_id integer NULL,
|
||||||
|
unit_source_value varchar(50) NULL,
|
||||||
|
unit_source_concept_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.measurement (
|
||||||
|
measurement_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
measurement_concept_id integer NOT NULL,
|
||||||
|
measurement_date date NOT NULL,
|
||||||
|
measurement_datetime datetime NULL,
|
||||||
|
measurement_time varchar(10) NULL,
|
||||||
|
measurement_type_concept_id integer NOT NULL,
|
||||||
|
operator_concept_id integer NULL,
|
||||||
|
value_as_number float NULL,
|
||||||
|
value_as_concept_id integer NULL,
|
||||||
|
unit_concept_id integer NULL,
|
||||||
|
range_low float NULL,
|
||||||
|
range_high float NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
measurement_source_value varchar(50) NULL,
|
||||||
|
measurement_source_concept_id integer NULL,
|
||||||
|
unit_source_value varchar(50) NULL,
|
||||||
|
unit_source_concept_id integer NULL,
|
||||||
|
value_source_value varchar(50) NULL,
|
||||||
|
measurement_event_id integer NULL,
|
||||||
|
meas_event_field_concept_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.observation (
|
||||||
|
observation_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
observation_concept_id integer NOT NULL,
|
||||||
|
observation_date date NOT NULL,
|
||||||
|
observation_datetime datetime NULL,
|
||||||
|
observation_type_concept_id integer NOT NULL,
|
||||||
|
value_as_number float NULL,
|
||||||
|
value_as_string varchar(60) NULL,
|
||||||
|
value_as_concept_id Integer NULL,
|
||||||
|
qualifier_concept_id integer NULL,
|
||||||
|
unit_concept_id integer NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
observation_source_value varchar(50) NULL,
|
||||||
|
observation_source_concept_id integer NULL,
|
||||||
|
unit_source_value varchar(50) NULL,
|
||||||
|
qualifier_source_value varchar(50) NULL,
|
||||||
|
value_source_value varchar(50) NULL,
|
||||||
|
observation_event_id integer NULL,
|
||||||
|
obs_event_field_concept_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.death (
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
death_date date NOT NULL,
|
||||||
|
death_datetime datetime NULL,
|
||||||
|
death_type_concept_id integer NULL,
|
||||||
|
cause_concept_id integer NULL,
|
||||||
|
cause_source_value varchar(50) NULL,
|
||||||
|
cause_source_concept_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.note (
|
||||||
|
note_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
note_date date NOT NULL,
|
||||||
|
note_datetime datetime NULL,
|
||||||
|
note_type_concept_id integer NOT NULL,
|
||||||
|
note_class_concept_id integer NOT NULL,
|
||||||
|
note_title varchar(250) NULL,
|
||||||
|
note_text varchar(MAX) NOT NULL,
|
||||||
|
encoding_concept_id integer NOT NULL,
|
||||||
|
language_concept_id integer NOT NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
note_source_value varchar(50) NULL,
|
||||||
|
note_event_id integer NULL,
|
||||||
|
note_event_field_concept_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.note_nlp (
|
||||||
|
note_nlp_id integer NOT NULL,
|
||||||
|
note_id integer NOT NULL,
|
||||||
|
section_concept_id integer NULL,
|
||||||
|
snippet varchar(250) NULL,
|
||||||
|
"offset" varchar(50) NULL,
|
||||||
|
lexical_variant varchar(250) NOT NULL,
|
||||||
|
note_nlp_concept_id integer NULL,
|
||||||
|
note_nlp_source_concept_id integer NULL,
|
||||||
|
nlp_system varchar(250) NULL,
|
||||||
|
nlp_date date NOT NULL,
|
||||||
|
nlp_datetime datetime NULL,
|
||||||
|
term_exists varchar(1) NULL,
|
||||||
|
term_temporal varchar(50) NULL,
|
||||||
|
term_modifiers varchar(2000) NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.specimen (
|
||||||
|
specimen_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
specimen_concept_id integer NOT NULL,
|
||||||
|
specimen_type_concept_id integer NOT NULL,
|
||||||
|
specimen_date date NOT NULL,
|
||||||
|
specimen_datetime datetime NULL,
|
||||||
|
quantity float NULL,
|
||||||
|
unit_concept_id integer NULL,
|
||||||
|
anatomic_site_concept_id integer NULL,
|
||||||
|
disease_status_concept_id integer NULL,
|
||||||
|
specimen_source_id varchar(50) NULL,
|
||||||
|
specimen_source_value varchar(50) NULL,
|
||||||
|
unit_source_value varchar(50) NULL,
|
||||||
|
anatomic_site_source_value varchar(50) NULL,
|
||||||
|
disease_status_source_value varchar(50) NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.fact_relationship (
|
||||||
|
domain_concept_id_1 integer NOT NULL,
|
||||||
|
fact_id_1 integer NOT NULL,
|
||||||
|
domain_concept_id_2 integer NOT NULL,
|
||||||
|
fact_id_2 integer NOT NULL,
|
||||||
|
relationship_concept_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.location (
|
||||||
|
location_id integer NOT NULL,
|
||||||
|
address_1 varchar(50) NULL,
|
||||||
|
address_2 varchar(50) NULL,
|
||||||
|
city varchar(50) NULL,
|
||||||
|
state varchar(2) NULL,
|
||||||
|
zip varchar(9) NULL,
|
||||||
|
county varchar(20) NULL,
|
||||||
|
location_source_value varchar(50) NULL,
|
||||||
|
country_concept_id integer NULL,
|
||||||
|
country_source_value varchar(80) NULL,
|
||||||
|
latitude float NULL,
|
||||||
|
longitude float NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.care_site (
|
||||||
|
care_site_id integer NOT NULL,
|
||||||
|
care_site_name varchar(255) NULL,
|
||||||
|
place_of_service_concept_id integer NULL,
|
||||||
|
location_id integer NULL,
|
||||||
|
care_site_source_value varchar(50) NULL,
|
||||||
|
place_of_service_source_value varchar(50) NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.provider (
|
||||||
|
provider_id integer NOT NULL,
|
||||||
|
provider_name varchar(255) NULL,
|
||||||
|
npi varchar(20) NULL,
|
||||||
|
dea varchar(20) NULL,
|
||||||
|
specialty_concept_id integer NULL,
|
||||||
|
care_site_id integer NULL,
|
||||||
|
year_of_birth integer NULL,
|
||||||
|
gender_concept_id integer NULL,
|
||||||
|
provider_source_value varchar(50) NULL,
|
||||||
|
specialty_source_value varchar(50) NULL,
|
||||||
|
specialty_source_concept_id integer NULL,
|
||||||
|
gender_source_value varchar(50) NULL,
|
||||||
|
gender_source_concept_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.payer_plan_period (
|
||||||
|
payer_plan_period_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
payer_plan_period_start_date date NOT NULL,
|
||||||
|
payer_plan_period_end_date date NOT NULL,
|
||||||
|
payer_concept_id integer NULL,
|
||||||
|
payer_source_value varchar(50) NULL,
|
||||||
|
payer_source_concept_id integer NULL,
|
||||||
|
plan_concept_id integer NULL,
|
||||||
|
plan_source_value varchar(50) NULL,
|
||||||
|
plan_source_concept_id integer NULL,
|
||||||
|
sponsor_concept_id integer NULL,
|
||||||
|
sponsor_source_value varchar(50) NULL,
|
||||||
|
sponsor_source_concept_id integer NULL,
|
||||||
|
family_source_value varchar(50) NULL,
|
||||||
|
stop_reason_concept_id integer NULL,
|
||||||
|
stop_reason_source_value varchar(50) NULL,
|
||||||
|
stop_reason_source_concept_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.cost (
|
||||||
|
cost_id integer NOT NULL,
|
||||||
|
cost_event_id integer NOT NULL,
|
||||||
|
cost_domain_id varchar(20) NOT NULL,
|
||||||
|
cost_type_concept_id integer NOT NULL,
|
||||||
|
currency_concept_id integer NULL,
|
||||||
|
total_charge float NULL,
|
||||||
|
total_cost float NULL,
|
||||||
|
total_paid float NULL,
|
||||||
|
paid_by_payer float NULL,
|
||||||
|
paid_by_patient float NULL,
|
||||||
|
paid_patient_copay float NULL,
|
||||||
|
paid_patient_coinsurance float NULL,
|
||||||
|
paid_patient_deductible float NULL,
|
||||||
|
paid_by_primary float NULL,
|
||||||
|
paid_ingredient_cost float NULL,
|
||||||
|
paid_dispensing_fee float NULL,
|
||||||
|
payer_plan_period_id integer NULL,
|
||||||
|
amount_allowed float NULL,
|
||||||
|
revenue_code_concept_id integer NULL,
|
||||||
|
revenue_code_source_value varchar(50) NULL,
|
||||||
|
drg_concept_id integer NULL,
|
||||||
|
drg_source_value varchar(3) NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.drug_era (
|
||||||
|
drug_era_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
drug_concept_id integer NOT NULL,
|
||||||
|
drug_era_start_date date NOT NULL,
|
||||||
|
drug_era_end_date date NOT NULL,
|
||||||
|
drug_exposure_count integer NULL,
|
||||||
|
gap_days integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.dose_era (
|
||||||
|
dose_era_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
drug_concept_id integer NOT NULL,
|
||||||
|
unit_concept_id integer NOT NULL,
|
||||||
|
dose_value float NOT NULL,
|
||||||
|
dose_era_start_date date NOT NULL,
|
||||||
|
dose_era_end_date date NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.condition_era (
|
||||||
|
condition_era_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
condition_concept_id integer NOT NULL,
|
||||||
|
condition_era_start_date date NOT NULL,
|
||||||
|
condition_era_end_date date NOT NULL,
|
||||||
|
condition_occurrence_count integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON KEY (person_id)
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.episode (
|
||||||
|
episode_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
episode_concept_id integer NOT NULL,
|
||||||
|
episode_start_date date NOT NULL,
|
||||||
|
episode_start_datetime datetime NULL,
|
||||||
|
episode_end_date date NULL,
|
||||||
|
episode_end_datetime datetime NULL,
|
||||||
|
episode_parent_id integer NULL,
|
||||||
|
episode_number integer NULL,
|
||||||
|
episode_object_concept_id integer NOT NULL,
|
||||||
|
episode_type_concept_id integer NOT NULL,
|
||||||
|
episode_source_value varchar(50) NULL,
|
||||||
|
episode_source_concept_id integer NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.episode_event (
|
||||||
|
episode_id integer NOT NULL,
|
||||||
|
event_id integer NOT NULL,
|
||||||
|
episode_event_field_concept_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.metadata (
|
||||||
|
metadata_id integer NOT NULL,
|
||||||
|
metadata_concept_id integer NOT NULL,
|
||||||
|
metadata_type_concept_id integer NOT NULL,
|
||||||
|
name varchar(250) NOT NULL,
|
||||||
|
value_as_string varchar(250) NULL,
|
||||||
|
value_as_concept_id integer NULL,
|
||||||
|
value_as_number float NULL,
|
||||||
|
metadata_date date NULL,
|
||||||
|
metadata_datetime datetime NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.cdm_source (
|
||||||
|
cdm_source_name varchar(255) NOT NULL,
|
||||||
|
cdm_source_abbreviation varchar(25) NOT NULL,
|
||||||
|
cdm_holder varchar(255) NOT NULL,
|
||||||
|
source_description varchar(MAX) NULL,
|
||||||
|
source_documentation_reference varchar(255) NULL,
|
||||||
|
cdm_etl_reference varchar(255) NULL,
|
||||||
|
source_release_date date NOT NULL,
|
||||||
|
cdm_release_date date NOT NULL,
|
||||||
|
cdm_version varchar(10) NULL,
|
||||||
|
cdm_version_concept_id integer NOT NULL,
|
||||||
|
vocabulary_version varchar(20) NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.concept (
|
||||||
|
concept_id integer NOT NULL,
|
||||||
|
concept_name varchar(255) NOT NULL,
|
||||||
|
domain_id varchar(20) NOT NULL,
|
||||||
|
vocabulary_id varchar(20) NOT NULL,
|
||||||
|
concept_class_id varchar(20) NOT NULL,
|
||||||
|
standard_concept varchar(1) NULL,
|
||||||
|
concept_code varchar(50) NOT NULL,
|
||||||
|
valid_start_date date NOT NULL,
|
||||||
|
valid_end_date date NOT NULL,
|
||||||
|
invalid_reason varchar(1) NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.vocabulary (
|
||||||
|
vocabulary_id varchar(20) NOT NULL,
|
||||||
|
vocabulary_name varchar(255) NOT NULL,
|
||||||
|
vocabulary_reference varchar(255) NULL,
|
||||||
|
vocabulary_version varchar(255) NULL,
|
||||||
|
vocabulary_concept_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema."DOMAIN" (
|
||||||
|
domain_id varchar(20) NOT NULL,
|
||||||
|
domain_name varchar(255) NOT NULL,
|
||||||
|
domain_concept_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.concept_class (
|
||||||
|
concept_class_id varchar(20) NOT NULL,
|
||||||
|
concept_class_name varchar(255) NOT NULL,
|
||||||
|
concept_class_concept_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.concept_relationship (
|
||||||
|
concept_id_1 integer NOT NULL,
|
||||||
|
concept_id_2 integer NOT NULL,
|
||||||
|
relationship_id varchar(20) NOT NULL,
|
||||||
|
valid_start_date date NOT NULL,
|
||||||
|
valid_end_date date NOT NULL,
|
||||||
|
invalid_reason varchar(1) NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.relationship (
|
||||||
|
relationship_id varchar(20) NOT NULL,
|
||||||
|
relationship_name varchar(255) NOT NULL,
|
||||||
|
is_hierarchical varchar(1) NOT NULL,
|
||||||
|
defines_ancestry varchar(1) NOT NULL,
|
||||||
|
reverse_relationship_id varchar(20) NOT NULL,
|
||||||
|
relationship_concept_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.concept_synonym (
|
||||||
|
concept_id integer NOT NULL,
|
||||||
|
concept_synonym_name varchar(1000) NOT NULL,
|
||||||
|
language_concept_id integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.concept_ancestor (
|
||||||
|
ancestor_concept_id integer NOT NULL,
|
||||||
|
descendant_concept_id integer NOT NULL,
|
||||||
|
min_levels_of_separation integer NOT NULL,
|
||||||
|
max_levels_of_separation integer NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.source_to_concept_map (
|
||||||
|
source_code varchar(50) NOT NULL,
|
||||||
|
source_concept_id integer NOT NULL,
|
||||||
|
source_vocabulary_id varchar(20) NOT NULL,
|
||||||
|
source_code_description varchar(255) NULL,
|
||||||
|
target_concept_id integer NOT NULL,
|
||||||
|
target_vocabulary_id varchar(20) NOT NULL,
|
||||||
|
valid_start_date date NOT NULL,
|
||||||
|
valid_end_date date NOT NULL,
|
||||||
|
invalid_reason varchar(1) NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.drug_strength (
|
||||||
|
drug_concept_id integer NOT NULL,
|
||||||
|
ingredient_concept_id integer NOT NULL,
|
||||||
|
amount_value float NULL,
|
||||||
|
amount_unit_concept_id integer NULL,
|
||||||
|
numerator_value float NULL,
|
||||||
|
numerator_unit_concept_id integer NULL,
|
||||||
|
denominator_value float NULL,
|
||||||
|
denominator_unit_concept_id integer NULL,
|
||||||
|
box_size integer NULL,
|
||||||
|
valid_start_date date NOT NULL,
|
||||||
|
valid_end_date date NOT NULL,
|
||||||
|
invalid_reason varchar(1) NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.cohort (
|
||||||
|
cohort_definition_id integer NOT NULL,
|
||||||
|
subject_id integer NOT NULL,
|
||||||
|
cohort_start_date date NOT NULL,
|
||||||
|
cohort_end_date date NOT NULL );
|
||||||
|
--HINT DISTRIBUTE ON RANDOM
|
||||||
|
CREATE TABLE @cdmDatabaseSchema.cohort_definition (
|
||||||
|
cohort_definition_id integer NOT NULL,
|
||||||
|
cohort_definition_name varchar(255) NOT NULL,
|
||||||
|
cohort_definition_description varchar(MAX) NULL,
|
||||||
|
definition_type_concept_id integer NOT NULL,
|
||||||
|
cohort_definition_syntax varchar(MAX) NULL,
|
||||||
|
subject_concept_id integer NOT NULL,
|
||||||
|
cohort_initiation_date date NULL );
|
||||||
|
|
@ -0,0 +1,98 @@
|
||||||
|
/*iris OMOP CDM Indices
|
||||||
|
There are no unique indices created because it is assumed that the primary key constraints have been run prior to
|
||||||
|
implementing indices.
|
||||||
|
*/
|
||||||
|
/************************
|
||||||
|
Standardized clinical data
|
||||||
|
************************/
|
||||||
|
CREATE INDEX idx_person_id ON @cdmDatabaseSchema.person (person_id ASC);
|
||||||
|
CREATE INDEX idx_gender ON @cdmDatabaseSchema.person (gender_concept_id ASC);
|
||||||
|
CREATE INDEX idx_observation_period_id_1 ON @cdmDatabaseSchema.observation_period (person_id ASC);
|
||||||
|
CREATE INDEX idx_visit_person_id_1 ON @cdmDatabaseSchema.visit_occurrence (person_id ASC);
|
||||||
|
CREATE INDEX idx_visit_concept_id_1 ON @cdmDatabaseSchema.visit_occurrence (visit_concept_id ASC);
|
||||||
|
CREATE INDEX idx_visit_det_person_id_1 ON @cdmDatabaseSchema.visit_detail (person_id ASC);
|
||||||
|
CREATE INDEX idx_visit_det_concept_id_1 ON @cdmDatabaseSchema.visit_detail (visit_detail_concept_id ASC);
|
||||||
|
CREATE INDEX idx_visit_det_occ_id ON @cdmDatabaseSchema.visit_detail (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_condition_person_id_1 ON @cdmDatabaseSchema.condition_occurrence (person_id ASC);
|
||||||
|
CREATE INDEX idx_condition_concept_id_1 ON @cdmDatabaseSchema.condition_occurrence (condition_concept_id ASC);
|
||||||
|
CREATE INDEX idx_condition_visit_id_1 ON @cdmDatabaseSchema.condition_occurrence (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_drug_person_id_1 ON @cdmDatabaseSchema.drug_exposure (person_id ASC);
|
||||||
|
CREATE INDEX idx_drug_concept_id_1 ON @cdmDatabaseSchema.drug_exposure (drug_concept_id ASC);
|
||||||
|
CREATE INDEX idx_drug_visit_id_1 ON @cdmDatabaseSchema.drug_exposure (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_procedure_person_id_1 ON @cdmDatabaseSchema.procedure_occurrence (person_id ASC);
|
||||||
|
CREATE INDEX idx_procedure_concept_id_1 ON @cdmDatabaseSchema.procedure_occurrence (procedure_concept_id ASC);
|
||||||
|
CREATE INDEX idx_procedure_visit_id_1 ON @cdmDatabaseSchema.procedure_occurrence (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_device_person_id_1 ON @cdmDatabaseSchema.device_exposure (person_id ASC);
|
||||||
|
CREATE INDEX idx_device_concept_id_1 ON @cdmDatabaseSchema.device_exposure (device_concept_id ASC);
|
||||||
|
CREATE INDEX idx_device_visit_id_1 ON @cdmDatabaseSchema.device_exposure (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_measurement_person_id_1 ON @cdmDatabaseSchema.measurement (person_id ASC);
|
||||||
|
CREATE INDEX idx_measurement_concept_id_1 ON @cdmDatabaseSchema.measurement (measurement_concept_id ASC);
|
||||||
|
CREATE INDEX idx_measurement_visit_id_1 ON @cdmDatabaseSchema.measurement (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_observation_person_id_1 ON @cdmDatabaseSchema.observation (person_id ASC);
|
||||||
|
CREATE INDEX idx_observation_concept_id_1 ON @cdmDatabaseSchema.observation (observation_concept_id ASC);
|
||||||
|
CREATE INDEX idx_observation_visit_id_1 ON @cdmDatabaseSchema.observation (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_death_person_id_1 ON @cdmDatabaseSchema.death (person_id ASC);
|
||||||
|
CREATE INDEX idx_note_person_id_1 ON @cdmDatabaseSchema.note (person_id ASC);
|
||||||
|
CREATE INDEX idx_note_concept_id_1 ON @cdmDatabaseSchema.note (note_type_concept_id ASC);
|
||||||
|
CREATE INDEX idx_note_visit_id_1 ON @cdmDatabaseSchema.note (visit_occurrence_id ASC);
|
||||||
|
CREATE INDEX idx_note_nlp_note_id_1 ON @cdmDatabaseSchema.note_nlp (note_id ASC);
|
||||||
|
CREATE INDEX idx_note_nlp_concept_id_1 ON @cdmDatabaseSchema.note_nlp (note_nlp_concept_id ASC);
|
||||||
|
CREATE INDEX idx_specimen_person_id_1 ON @cdmDatabaseSchema.specimen (person_id ASC);
|
||||||
|
CREATE INDEX idx_specimen_concept_id_1 ON @cdmDatabaseSchema.specimen (specimen_concept_id ASC);
|
||||||
|
CREATE INDEX idx_fact_relationship_id1 ON @cdmDatabaseSchema.fact_relationship (domain_concept_id_1 ASC);
|
||||||
|
CREATE INDEX idx_fact_relationship_id2 ON @cdmDatabaseSchema.fact_relationship (domain_concept_id_2 ASC);
|
||||||
|
CREATE INDEX idx_fact_relationship_id3 ON @cdmDatabaseSchema.fact_relationship (relationship_concept_id ASC);
|
||||||
|
/************************
|
||||||
|
Standardized health system data
|
||||||
|
************************/
|
||||||
|
CREATE INDEX idx_location_id_1 ON @cdmDatabaseSchema.location (location_id ASC);
|
||||||
|
CREATE INDEX idx_care_site_id_1 ON @cdmDatabaseSchema.care_site (care_site_id ASC);
|
||||||
|
CREATE INDEX idx_provider_id_1 ON @cdmDatabaseSchema.provider (provider_id ASC);
|
||||||
|
/************************
|
||||||
|
Standardized health economics
|
||||||
|
************************/
|
||||||
|
CREATE INDEX idx_period_person_id_1 ON @cdmDatabaseSchema.payer_plan_period (person_id ASC);
|
||||||
|
CREATE INDEX idx_cost_event_id ON @cdmDatabaseSchema.cost (cost_event_id ASC);
|
||||||
|
/************************
|
||||||
|
Standardized derived elements
|
||||||
|
************************/
|
||||||
|
CREATE INDEX idx_drug_era_person_id_1 ON @cdmDatabaseSchema.drug_era (person_id ASC);
|
||||||
|
CREATE INDEX idx_drug_era_concept_id_1 ON @cdmDatabaseSchema.drug_era (drug_concept_id ASC);
|
||||||
|
CREATE INDEX idx_dose_era_person_id_1 ON @cdmDatabaseSchema.dose_era (person_id ASC);
|
||||||
|
CREATE INDEX idx_dose_era_concept_id_1 ON @cdmDatabaseSchema.dose_era (drug_concept_id ASC);
|
||||||
|
CREATE INDEX idx_condition_era_person_id_1 ON @cdmDatabaseSchema.condition_era (person_id ASC);
|
||||||
|
CREATE INDEX idx_condition_era_concept_id_1 ON @cdmDatabaseSchema.condition_era (condition_concept_id ASC);
|
||||||
|
/**************************
|
||||||
|
Standardized meta-data
|
||||||
|
***************************/
|
||||||
|
CREATE INDEX idx_metadata_concept_id_1 ON @cdmDatabaseSchema.metadata (metadata_concept_id ASC);
|
||||||
|
/**************************
|
||||||
|
Standardized vocabularies
|
||||||
|
***************************/
|
||||||
|
CREATE INDEX idx_concept_concept_id ON @cdmDatabaseSchema.concept (concept_id ASC);
|
||||||
|
CREATE INDEX idx_concept_code ON @cdmDatabaseSchema.concept (concept_code ASC);
|
||||||
|
CREATE INDEX idx_concept_vocabulary_id ON @cdmDatabaseSchema.concept (vocabulary_id ASC);
|
||||||
|
CREATE INDEX idx_concept_domain_id ON @cdmDatabaseSchema.concept (domain_id ASC);
|
||||||
|
CREATE INDEX idx_concept_class_id ON @cdmDatabaseSchema.concept (concept_class_id ASC);
|
||||||
|
CREATE INDEX idx_vocabulary_vocabulary_id ON @cdmDatabaseSchema.vocabulary (vocabulary_id ASC);
|
||||||
|
CREATE INDEX idx_domain_domain_id ON @cdmDatabaseSchema."DOMAIN" (domain_id ASC);
|
||||||
|
CREATE INDEX idx_concept_class_class_id ON @cdmDatabaseSchema.concept_class (concept_class_id ASC);
|
||||||
|
CREATE INDEX idx_concept_relationship_id_1 ON @cdmDatabaseSchema.concept_relationship (concept_id_1 ASC);
|
||||||
|
CREATE INDEX idx_concept_relationship_id_2 ON @cdmDatabaseSchema.concept_relationship (concept_id_2 ASC);
|
||||||
|
CREATE INDEX idx_concept_relationship_id_3 ON @cdmDatabaseSchema.concept_relationship (relationship_id ASC);
|
||||||
|
CREATE INDEX idx_relationship_rel_id ON @cdmDatabaseSchema.relationship (relationship_id ASC);
|
||||||
|
CREATE INDEX idx_concept_synonym_id ON @cdmDatabaseSchema.concept_synonym (concept_id ASC);
|
||||||
|
CREATE INDEX idx_concept_ancestor_id_1 ON @cdmDatabaseSchema.concept_ancestor (ancestor_concept_id ASC);
|
||||||
|
CREATE INDEX idx_concept_ancestor_id_2 ON @cdmDatabaseSchema.concept_ancestor (descendant_concept_id ASC);
|
||||||
|
CREATE INDEX idx_source_to_concept_map_3 ON @cdmDatabaseSchema.source_to_concept_map (target_concept_id ASC);
|
||||||
|
CREATE INDEX idx_source_to_concept_map_1 ON @cdmDatabaseSchema.source_to_concept_map (source_vocabulary_id ASC);
|
||||||
|
CREATE INDEX idx_source_to_concept_map_2 ON @cdmDatabaseSchema.source_to_concept_map (target_vocabulary_id ASC);
|
||||||
|
CREATE INDEX idx_source_to_concept_map_c ON @cdmDatabaseSchema.source_to_concept_map (source_code ASC);
|
||||||
|
CREATE INDEX idx_drug_strength_id_1 ON @cdmDatabaseSchema.drug_strength (drug_concept_id ASC);
|
||||||
|
CREATE INDEX idx_drug_strength_id_2 ON @cdmDatabaseSchema.drug_strength (ingredient_concept_id ASC);
|
||||||
|
--Additional v6.0 indices
|
||||||
|
--CREATE CLUSTERED INDEX idx_survey_person_id_1 ON @cdmDatabaseSchema.survey_conduct (person_id ASC);
|
||||||
|
--CREATE CLUSTERED INDEX idx_episode_person_id_1 ON @cdmDatabaseSchema.episode (person_id ASC);
|
||||||
|
--CREATE INDEX idx_episode_concept_id_1 ON @cdmDatabaseSchema.episode (episode_concept_id ASC);
|
||||||
|
--CREATE CLUSTERED INDEX idx_episode_event_id_1 ON @cdmDatabaseSchema.episode_event (episode_id ASC);
|
||||||
|
--CREATE INDEX idx_ee_field_concept_id_1 ON @cdmDatabaseSchema.episode_event (event_field_concept_id ASC);
|
||||||
|
|
@ -0,0 +1,29 @@
|
||||||
|
--iris CDM Primary Key Constraints for OMOP Common Data Model 5.4
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT xpk_person PRIMARY KEY (person_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation_period ADD CONSTRAINT xpk_observation_period PRIMARY KEY (observation_period_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT xpk_visit_occurrence PRIMARY KEY (visit_occurrence_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT xpk_visit_detail PRIMARY KEY (visit_detail_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT xpk_condition_occurrence PRIMARY KEY (condition_occurrence_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT xpk_drug_exposure PRIMARY KEY (drug_exposure_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT xpk_procedure_occurrence PRIMARY KEY (procedure_occurrence_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT xpk_device_exposure PRIMARY KEY (device_exposure_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT xpk_measurement PRIMARY KEY (measurement_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT xpk_observation PRIMARY KEY (observation_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT xpk_note PRIMARY KEY (note_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.note_nlp ADD CONSTRAINT xpk_note_nlp PRIMARY KEY (note_nlp_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT xpk_specimen PRIMARY KEY (specimen_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.location ADD CONSTRAINT xpk_location PRIMARY KEY (location_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.care_site ADD CONSTRAINT xpk_care_site PRIMARY KEY (care_site_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT xpk_provider PRIMARY KEY (provider_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT xpk_payer_plan_period PRIMARY KEY (payer_plan_period_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT xpk_cost PRIMARY KEY (cost_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.drug_era ADD CONSTRAINT xpk_drug_era PRIMARY KEY (drug_era_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.dose_era ADD CONSTRAINT xpk_dose_era PRIMARY KEY (dose_era_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.condition_era ADD CONSTRAINT xpk_condition_era PRIMARY KEY (condition_era_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.episode ADD CONSTRAINT xpk_episode PRIMARY KEY (episode_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.metadata ADD CONSTRAINT xpk_metadata PRIMARY KEY (metadata_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept ADD CONSTRAINT xpk_concept PRIMARY KEY (concept_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.vocabulary ADD CONSTRAINT xpk_vocabulary PRIMARY KEY (vocabulary_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema."DOMAIN" ADD CONSTRAINT xpk_domain PRIMARY KEY (domain_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.concept_class ADD CONSTRAINT xpk_concept_class PRIMARY KEY (concept_class_id);
|
||||||
|
ALTER TABLE @cdmDatabaseSchema.relationship ADD CONSTRAINT xpk_relationship PRIMARY KEY (relationship_id);
|
||||||
|
|
@ -1,4 +1,4 @@
|
||||||
testDatabases <- c("postgresql")
|
testDatabases <- c("postgresql","iris")
|
||||||
|
|
||||||
if (Sys.getenv("CDM5_POSTGRESQL_SERVER") != "") {
|
if (Sys.getenv("CDM5_POSTGRESQL_SERVER") != "") {
|
||||||
library(DatabaseConnector)
|
library(DatabaseConnector)
|
||||||
|
|
@ -54,6 +54,13 @@ getConnectionDetails <- function(dbms) {
|
||||||
password = Sys.getenv("CDMDDLBASE_ORACLE_PASSWORD"),
|
password = Sys.getenv("CDMDDLBASE_ORACLE_PASSWORD"),
|
||||||
server = Sys.getenv("CDMDDLBASE_ORACLE_SERVER"),
|
server = Sys.getenv("CDMDDLBASE_ORACLE_SERVER"),
|
||||||
pathToDriver = jdbcDriverFolder
|
pathToDriver = jdbcDriverFolder
|
||||||
|
),
|
||||||
|
"iris" = createConnectionDetails(
|
||||||
|
dbms = "iris",
|
||||||
|
user = Sys.getenv("CDM_IRIS_USER"),
|
||||||
|
password = Sys.getenv("CDM_IRIS_PASSWORD"),
|
||||||
|
connectionString = Sys.getenv("CDM_IRIS_CONNECTION_STRING"),
|
||||||
|
pathToDriver = jdbcDriverFolder
|
||||||
)
|
)
|
||||||
)
|
)
|
||||||
}
|
}
|
||||||
|
|
@ -64,7 +71,8 @@ getSchema <- function(dbms) {
|
||||||
"postgresql" = Sys.getenv("CDMDDLBASE_POSTGRESQL_SCHEMA"),
|
"postgresql" = Sys.getenv("CDMDDLBASE_POSTGRESQL_SCHEMA"),
|
||||||
"redshift" = Sys.getenv("CDMDDLBASE_REDSHIFT_SCHEMA"),
|
"redshift" = Sys.getenv("CDMDDLBASE_REDSHIFT_SCHEMA"),
|
||||||
"sql server" = Sys.getenv("CDMDDLBASE_SQL_SERVER_CDM_SCHEMA"),
|
"sql server" = Sys.getenv("CDMDDLBASE_SQL_SERVER_CDM_SCHEMA"),
|
||||||
"oracle" = Sys.getenv("CDMDDLBASE_ORACLE_CDM_SCHEMA")
|
"oracle" = Sys.getenv("CDMDDLBASE_ORACLE_CDM_SCHEMA"),
|
||||||
|
"iris" = Sys.getenv("CDM_IRIS_CDM_SCHEMA")
|
||||||
)
|
)
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
@ -74,11 +82,11 @@ listTablesInSchema <- function(connectionDetails, schema) {
|
||||||
class(schema) == "character",
|
class(schema) == "character",
|
||||||
length(schema) == 1
|
length(schema) == 1
|
||||||
)
|
)
|
||||||
stopifnot(connectionDetails$dbms %in% c("postgresql", "redshift", "sql server", "oracle"))
|
stopifnot(connectionDetails$dbms %in% testDatabases)
|
||||||
con <- DatabaseConnector::connect(connectionDetails)
|
con <- DatabaseConnector::connect(connectionDetails)
|
||||||
on.exit(DatabaseConnector::disconnect(con))
|
on.exit(DatabaseConnector::disconnect(con))
|
||||||
dbms <- connectionDetails$dbms
|
dbms <- connectionDetails$dbms
|
||||||
if (dbms %in% c("postgresql", "redshift", "sql server")) {
|
if (dbms %in% c("postgresql", "redshift", "sql server", "iris")) {
|
||||||
tables <-
|
tables <-
|
||||||
dbGetQuery(
|
dbGetQuery(
|
||||||
con,
|
con,
|
||||||
|
|
@ -106,13 +114,13 @@ dropAllTablesFromSchema <- function(connectionDetails, schema) {
|
||||||
class(schema) == "character",
|
class(schema) == "character",
|
||||||
length(schema) == 1
|
length(schema) == 1
|
||||||
)
|
)
|
||||||
stopifnot(connectionDetails$dbms %in% c("postgresql", "redshift", "sql server", "oracle"))
|
stopifnot(connectionDetails$dbms %in% testDatabases)
|
||||||
tableNames <- listTablesInSchema(connectionDetails, schema)
|
tableNames <- listTablesInSchema(connectionDetails, schema)
|
||||||
|
|
||||||
con <- DatabaseConnector::connect(connectionDetails)
|
con <- DatabaseConnector::connect(connectionDetails)
|
||||||
on.exit(DatabaseConnector::disconnect(con))
|
on.exit(DatabaseConnector::disconnect(con))
|
||||||
dbms <- connectionDetails$dbms
|
dbms <- connectionDetails$dbms
|
||||||
if (dbms %in% c("redshift", "postgresql", "sql server")) {
|
if (dbms %in% c("redshift", "postgresql", "sql server", "iris")) {
|
||||||
for (tableName in tableNames) {
|
for (tableName in tableNames) {
|
||||||
DBI::dbExecute(con, paste(
|
DBI::dbExecute(con, paste(
|
||||||
"DROP TABLE IF EXISTS",
|
"DROP TABLE IF EXISTS",
|
||||||
|
|
|
||||||
Loading…
Reference in New Issue