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Adds version queries for the cdm and vocab 

closes #463
This commit is contained in:
Clair Blacketer 2022-01-13 11:49:47 -05:00
parent 6b53641c83
commit 247a1fe0c1
1 changed files with 2 additions and 2 deletions
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4
inst/csv/OMOP_CDMv5.4_Field_Level.csv
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@ -401,8 +401,8 @@ CDM_SOURCE,cdm_etl_reference,No,varchar(255),,Put the link to the CDM version us
CDM_SOURCE,source_release_date,Yes,date,The release date of the source data.,,No,No,,,,, CDM_SOURCE,source_release_date,Yes,date,The release date of the source data.,,No,No,,,,,
CDM_SOURCE,cdm_release_date,Yes,date,The release data of the CDM instance.,,No,No,,,,, CDM_SOURCE,cdm_release_date,Yes,date,The release data of the CDM instance.,,No,No,,,,,
CDM_SOURCE,cdm_version,No,varchar(10),,,No,No,,,,, CDM_SOURCE,cdm_version,No,varchar(10),,,No,No,,,,,
CDM_SOURCE,cdm_version_concept_id,Yes,integer,The Concept Id representing the version of the CDM.,,No,Yes,CONCEPT,CONCEPT_ID,,, CDM_SOURCE,cdm_version_concept_id,Yes,integer,The Concept Id representing the version of the CDM.,You can find all concepts that represent the CDM versions using the query: SELECT * FROM CONCEPT WHERE VOCABULARY_ID = 'CDM' AND CONCEPT_CLASS = 'CDM',No,Yes,CONCEPT,CONCEPT_ID,,,
CDM_SOURCE,vocabulary_version,Yes,varchar(20),,,No,No,,,,, CDM_SOURCE,vocabulary_version,Yes,varchar(20),,You can find the version of your Vocabulary using the query: SELECT vocabulary_version from vocabulary where vocabulary_id = 'None',No,No,,,,,
CONCEPT,concept_id,Yes,integer,A unique identifier for each Concept across all domains.,,Yes,No,,,,, CONCEPT,concept_id,Yes,integer,A unique identifier for each Concept across all domains.,,Yes,No,,,,,
CONCEPT,concept_name,Yes,varchar(255),"An unambiguous, meaningful and descriptive name for the Concept.",,No,No,,,,, CONCEPT,concept_name,Yes,varchar(255),"An unambiguous, meaningful and descriptive name for the Concept.",,No,No,,,,,
CONCEPT,domain_id,Yes,varchar(20),A foreign key to the [DOMAIN](https://ohdsi.github.io/CommonDataModel/cdm531.html#domain) table the Concept belongs to.,,No,Yes,DOMAIN,DOMAIN_ID,,, CONCEPT,domain_id,Yes,varchar(20),A foreign key to the [DOMAIN](https://ohdsi.github.io/CommonDataModel/cdm531.html#domain) table the Concept belongs to.,,No,Yes,DOMAIN,DOMAIN_ID,,,

1 cdmTableName cdmFieldName isRequired cdmDatatype userGuidance etlConventions isPrimaryKey isForeignKey fkTableName fkFieldName fkDomain fkClass unique DQ identifiers
401 CONCEPT_ANCESTOR max_levels_of_separation Yes integer The maximum separation in number of levels of hierarchy between ancestor and descendant concepts. This is an attribute that is used to simplify hierarchic analysis. No No
402 SOURCE_TO_CONCEPT_MAP source_code Yes varchar(50) The source code being translated into a Standard Concept. No No
403 SOURCE_TO_CONCEPT_MAP source_concept_id Yes integer A foreign key to the Source Concept that is being translated into a Standard Concept. This is either 0 or should be a number above 2 billion, which are the Concepts reserved for site-specific codes and mappings. No Yes CONCEPT CONCEPT_ID
404 SOURCE_TO_CONCEPT_MAP source_vocabulary_id Yes varchar(20) A foreign key to the VOCABULARY table defining the vocabulary of the source code that is being translated to a Standard Concept. No No
405 SOURCE_TO_CONCEPT_MAP source_code_description No varchar(255) An optional description for the source code. This is included as a convenience to compare the description of the source code to the name of the concept. No No
406 SOURCE_TO_CONCEPT_MAP target_concept_id Yes integer The target Concept to which the source code is being mapped. No Yes CONCEPT CONCEPT_ID
407 SOURCE_TO_CONCEPT_MAP target_vocabulary_id Yes varchar(20) The Vocabulary of the target Concept. No Yes VOCABULARY VOCABULARY_ID
408 SOURCE_TO_CONCEPT_MAP valid_start_date Yes date The date when the mapping instance was first recorded. No No