Merge branch 'master' of https://github.com/OHDSI/CommonDataModel
This commit is contained in:
clairblacketer
commit
2529ef51b8
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@ -1,3 +1,4 @@
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/*OMOP CDM v5.3.1 14June2018*/
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#standardsql
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create table concept (
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concept_id INT64 not null ,
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@ -268,18 +269,18 @@ create table visit_detail
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visit_detail_id INT64 not null ,
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person_id INT64 not null ,
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visit_detail_concept_id INT64 not null ,
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visit_start_DATE DATE not null ,
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visit_start_DATETIME DATETIME ,
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visit_end_DATE DATE not null ,
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visit_end_DATETIME DATETIME ,
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visit_type_concept_id INT64 not null ,
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visit_detail_start_DATE DATE not null ,
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visit_detail_start_DATETIME DATETIME ,
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visit_detail_end_DATE DATE not null ,
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visit_detail_end_DATETIME DATETIME ,
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visit_deatil_type_concept_id INT64 not null ,
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provider_id INT64 ,
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care_site_id INT64 ,
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admitting_source_concept_id INT64 ,
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discharge_to_concept_id INT64 ,
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preceding_visit_detail_id INT64 ,
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visit_source_value STRING ,
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visit_source_concept_id INT64 ,
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visit_detail_source_value STRING ,
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visit_deatil_source_concept_id INT64 ,
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admitting_source_value STRING ,
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discharge_to_source_value STRING ,
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visit_detail_parent_id INT64 ,
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@ -0,0 +1,160 @@
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## Common Data Model
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**1. I understand that the common data model (CDM) is a way of organizing disparate data sources into the same relational database design, but how can it be effective since many databases use different coding schemes?**
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During the extract, transform, load (ETL) process of converting a data source into the OMOP common data model, we standardize the structure (e.g. tables, fields, data types), conventions (e.g. rules that govern how source data should be represented), and content (e.g. what common vocabularies are used to speak the same language across clinical domains). The common data model preserves all source data, including the original source vocabulary codes, but adds the standardized vocabularies to allow for network research across the entire OHDSI research community.
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**2. How does my data get transformed into the common data model?**
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You or someone in your organization will need to create a process to build your CDM. Don’t worry though, you are not alone! The open nature of the community means that much of the code that other participants have written to transform their own data is available for you to use. If you have a data license for a large administrative claims database like Truven Health MarketScan® or Optum’s Clinformatics® Extended Data Mart, chances are that someone has already done the legwork. Here is one example of a full builder freely available on [github](https://github.com/OHDSI/ETL-CDMBuilder) that has been written for a variety of data sources.
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The [community forums](http://forums.ohdsi.org/) are also a great place to ask questions if you are stuck or need guidance on how to represent your data in the common data model. Members are usually very responsive!
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**3. Are any tables or fields optional?**
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It is expected that all tables will be present in a CDM though it is not a requirement that they are all populated. The two mandatory tables are:
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* [Person](https://github.com/OHDSI/CommonDataModel/wiki/person): Contains records that uniquely identify each patient in the source data who is at-risk to have clinical observations recorded within the source systems.
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* [Observation_period](https://github.com/OHDSI/CommonDataModel/wiki/observation_period): Contains records which uniquely define the spans of time for which a Person is at-risk to have clinical events recorded within the source systems.
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It is then up to you which tables to populate, though the core event tables are generally agreed upon to be [Condition_occurrence](https://github.com/OHDSI/CommonDataModel/wiki/CONDITION_OCCURRENCE), [Procedure_occurrence](https://github.com/OHDSI/CommonDataModel/wiki/PROCEDURE_OCCURRENCE), [Drug_exposure](https://github.com/OHDSI/CommonDataModel/wiki/DRUG_EXPOSURE), [Measurement](https://github.com/OHDSI/CommonDataModel/wiki/MEASUREMENT), and [Observation](https://github.com/OHDSI/CommonDataModel/wiki/OBSERVATION). Each table has certain required fields, a full list of which can be found on the Common Data Model [wiki page](https://github.com/OHDSI/CommonDataModel/wiki/).
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**4. Does the data model include any derived information? Which tables or values are derived?**
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The common data model stores verbatim data from the source across various clinical domains, such as records for conditions, drugs, procedures, and measurements. In addition, to assist the analyst, the common data model also provides some derived tables, based on commonly used analytic procedures. For example, the [Condition_era](https://github.com/OHDSI/CommonDataModel/wiki/CONDITION_ERA) table is derived from the [Condition_occurrence](https://github.com/OHDSI/CommonDataModel/wiki/CONDITION_OCCURENCE) table and both the [Drug_era](https://github.com/OHDSI/CommonDataModel/wiki/DRUG_ERA) and [Dose_era](https://github.com/OHDSI/CommonDataModel/wiki/DOSE_ERA) tables are derived from the [Drug_exposure](https://github.com/OHDSI/CommonDataModel/wiki/DRUG_EXPOSURE) table. An era is defined as a span of time when a patient is assumed to have a given condition or exposure to a particular active ingredient. Members of the community have written code to create these tables and it is out on the [github](https://github.com/OHDSI/CommonDataModel/tree/master/CodeExcerpts/DerivedTables) if you choose to use it in your CDM build. It is important to reinforce, the analyst has the opportunity, but not the obligation, to use any of the derived tables and all of the source data is still available for direct use if the analysis calls for different assumptions.
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**5. How is age captured in the model?**
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Year_of_birth, month_of_birth, day_of_birth and birth_datetime are all fields in the Person table designed to capture some form of date of birth. While only year_of_birth is required, these fields allow for maximum flexibility over a wide range of data sources.
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**6. How are gender, race, and ethnicity captured in the model? Are they coded using values a human reader can understand?**
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Standard Concepts are used to denote all clinical entities throughout the OMOP common data model, including gender, race, and ethnicity. Source values are mapped to Standard Concepts during the extract, transform, load (ETL) process of converting a database to the OMOP Common Data Model. These are then stored in the Gender_concept_id, Race_concept_id and Ethnicity_concept_id fields in the Person table. Because the standard concepts span across all clinical domains, and in keeping with Cimino’s ‘Desiderata for Controlled Medical Vocabularies in the Twenty-First Century’, the identifiers are unique, persistent nonsematic identifiers. Gender, for example, is stored as either 8532 (female) or 8507 (male) in gender_concept_id while the original value from the source is stored in gender_source_value (M, male, F, etc)..
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**7. How is time-varying patient information such as location of residence addressed in the model?**
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The OMOP common data model has been pragmatically defined based on the desired analytic use cases of the community, as well as the available types of data that community members have access to. Currently in the model, Each each person record has associated demographic attributes which are assumed to be constant for the patient throughout the course of their periods of observation. For example, the location or primary care provider is expected to have a unique value per person, even though in life these data may change over time. Typically, the most recent information is chosen though it is up to the person performing the transformation which value to store.
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Something like marital status is a little different as it is considered to be an observation rather than a demographic attribute. This means that it is housed in the Observation table rather than the Person table, giving the opportunity to store each change in status as a unique record.
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If someone in the community had a use case for time-varying location of residence and also had source data that contains this information, we’d welcome participation in the CDM workgroup to evolve the model further.
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**8. How does the model denote the time period during which a Person’s information is valid?**
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The OMOP Common Data Model uses something called observation periods (stored in the [Observation_period](https://github.com/OHDSI/CommonDataModel/wiki/observation_period) table) as a way to define the time span during which a patient is at-risk to have a clinical event recorded. In administrative claims databases, for example, these observation periods are often analogous to the notion of ‘enrollment’.
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**9. How does the model capture start and stop dates for insurance coverage? What if a person’s coverage changes?**
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The [Payer_plan_period](https://github.com/OHDSI/CommonDataModel/wiki/payer_plan_period) table captures details of the period of time that a Person is continuously enrolled under a specific health Plan benefit structure from a given Payer. Payer plan periods, as opposed to observation periods, can overlap so as to denote the time when a Person is enrolled in multiple plans at the same time such as Medicare Part A and Medicare Part D.
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**10. What if I have EHR data? How would I create observation periods?**
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An observation period is considered as the time at which a patient is at-risk to have a clinical event recorded in the source system. Determining the appropriate observation period for each source data can vary, depending on what information the source contains. If a source does not provide information about a patient’s entry or exit from a system, then reasonable heuristics need to be developed and applied within the ETL.
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## Vocabulary Mapping
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**11. Do I have to map my source codes to Standard Concepts myself? Are there vocabulary mappings that already exist for me to leverage?**
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If your data use any of the 55 source vocabularies that are currently supported, the mappings have been done for you. The full list is available from the open-source [ATHENA](http://athena.ohdsi.org/search-terms/terms) tool under the download tab (see below). You can choose to download the ten [vocabulary tables](https://github.com/OHDSI/CommonDataModel/wiki/Standardized-Vocabularies) from there as well – you will need a copy in your environment if you plan on building a CDM.
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The [ATHENA](http://athena.ohdsi.org/search-terms/terms) tool also allows you to explore the vocabulary before downloading it if you are curious about the mappings or if you have a specific code in mind and would like to know which standard concept it is associated with; just click on the search tab and type in a keyword to begin searching.
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**12. If I want to apply the mappings myself, can I do so? Are they transparent to all users?**
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Yes, all mappings are available in the [Concept_relationship](https://github.com/OHDSI/CommonDataModel/wiki/CONCEPT_RELATIONSHIP) table (which can be downloaded from [ATHENA](http://athena.ohdsi.org/search-terms/terms)). Each value in a supported source terminology is assigned a Concept_id (which is considered non-standard). Each Source_concept_id will have a mapping to a Standard_concept_id. For example:
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In this case the standard SNOMED concept 201826 for type 2 diabetes mellitus would be stored in the Condition_occurrence table as the Condition_concept_id and the ICD10CM concept 1567956 for type 2 diabetes mellitus would be stored as the Condition_source_concept_id.
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**13. Can RXNorm codes be stored in the model? Can I store multiple levels if I so choose? What if one collaborator uses a different level of RXNorm than I use when transforming their database?**
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In the OMOP Common Data Model RXNorm is considered the standard vocabulary for representing drug exposures. One of the great things about the Standardized Vocabulary is that the hierarchical nature of RXNorm is preserved to enable efficient querying. It is agreed upon best practice to store the lowest level RXNorm available and then use the Vocabulary to explore any pertinent relationships. Drug ingredients are the highest-level ancestors so a query for the descendants of an ingredient should turn up all drug products (Clinical Drug or Branded Drug) containing that ingredient. A query designed in this way will find drugs of interest in any CDM regardless of the level of RXNorm used.
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**14. What if the vocabulary has a mapping I don’t agree with? Can it be changed?**
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Yes, that is the beauty of the community! If you find a mapping in the vocabulary that doesn’t seem to belong or that you think could be better, feel free to write a note on the [forums](https://forums.ohdsi.org/) or on the [vocabulary github](https://github.com/OHDSI/Vocabulary-v5.0/issues). If the community agrees with your assessment it will be addressed in the next vocabulary version.
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**15. What if I have source codes that are specific to my site? How would these be mapped?**
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We have a tool called [Usagi](https://github.com/OHDSI/Usagi) (pictured below) that is designed to create mappings between coding systems and the Vocabulary Standard Concepts by using concept names and synonyms to find potential matches.
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**16. How are one-to-many mappings applied?**
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If one source code maps to two Standard Concepts then two rows are stored in the corresponding clinical event table.
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**17. What if I want to keep my original data as well as the mapped values? Is there a way for me to do that?**
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Yes! Source values and Source Concepts are fully maintained within the OMOP Common Data Model. A Source Concept represents the code in the source data. Each Source Concept is mapped to one or more Standard Concepts during the ETL process and both are stored in the corresponding clinical event table. If no mapping is available, the Standard Concept with the concept_id = 0 is written into the *_concept_id field (Condition_concept_id, Procedure_concept_id, etc.) so as to preserve the record from the native data.
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## Common Data Model Versioning
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**18. Who decides when and how to change the data model?**
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The community! There is a [working group](https://docs.google.com/document/d/144e_fc7dyuinfJfbYW5MsJeSijVSzsNE7GMY6KRX10g/edit?usp=sharing) designed around updating the model and everything is done by consensus. Members submit proposed changes to the [github](https://github.com/OHDSI/CommonDataModel) in the form of [issues](https://github.com/OHDSI/CommonDataModel/issues) and the group meets once a month to discuss and vote on the changes. Any ratified proposals are then added to the queue for a future version of the Common Data Model.
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**19. Are changes to the model backwards compatible?**
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Generally point version changes (5.1 -> 5.2) are backwards compatible and major version changes (4.0 -> 5.0) may not be. All updates to the model are listed in the release notes for each version and anything that could potentially affect backwards compatibility is clearly labeled.
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**20. How frequently does the model change?**
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The current schedule is for major versions to be released every year and point versions to be release every quarter though that is subject to the needs of the community.
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**21. What is the dissemination plan for changes?**
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Changes are first listed in the release notes on the [github](https://github.com/OHDSI/CommonDataModel/) and in the [common data model wiki](https://github.com/OHDSI/CommonDataModel/wiki). New versions are also announced on the weekly community calls and on the [community forums](https://forums.ohdsi.org).
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## OHDSI Tools
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**22. What are the currently available analytic tools?**
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While there are a variety of tools freely available from the community, these are the most widely used:
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* [ACHILLES](http://www.github.com/ohdsi/achilles) – a stand-alone tool for database characterization
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* [ATLAS](http://www.ohdsi.org/web/atlas/#/home) - an integrated platform for vocabulary exploration, cohort definition, case review, clinical characterization, incidence estimation, population-level effect estimation design, and patient-level prediction design ([link to github](http://www.github.com/ohdsi/atlas))
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* [ARACHNE](https://github.com/OHDSI/ArachneUI) – a tool to facilitate distributed network analyses
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* [WhiteRabbit](https://github.com/OHDSI/whiterabbit) - an application that can be used to analyse the structure and contents of a database as preparation for designing an ETL
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* [RabbitInAHat](https://github.com/OHDSI/whiterabbit) - an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit
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* [Usagi](https://github.com/OHDSI/usagi) - an application to help create mappings between coding systems and the Vocabulary standard concepts.
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**23. Who is responsible for updating the tools to account for data model changes, bugs, and errors?**
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The community! All the tools are open source meaning that anyone can submit an issue they have found, offer suggestions, and write code to fix the problem.
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**24. Do the current tools allow a user to define a treatment gap (persistence window) of any value when creating treatment episodes?**
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Yes – the ATLAS tool allows you to specify a persistence window between drug exposures when defining a cohort (see image below).
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**25. Can the current tools identify medication use during pregnancy?**
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Yes, you can identify pregnancy markers from various clinical domains, including conditions and procedures, for example ‘live birth’, and then define temporal logic to look for drug exposure records in some interval prior to the pregnancy end. In addition, members of the community have built an advanced logic to define pregnancy episodes with all pregnancy outcomes represented, which can be useful for this type of research.
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**26. Do the current tools execute against the mapped values or source values?**
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The tools can execute against both source and mapped values, though mapped values are strongly encouraged. Since one of the aims of OHDSI is to create a distributed data network across the world on which to run research studies, the use of source values fails to take advantage of the benefits of the Common Data Model.
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## Network Research Studies
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**27. Who can generate requests?**
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Anyone in the community! Any question that gains enough interest and participation can be a network research study.
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**28. Who will develop the queries to distribute to the network?**
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Typically a principal investigator leads the development of a protocol. The PI may also lead the development of the analysis procedure corresponding to the protocol. If the PI does not have the technical skills required to write the analysis procedure that implements the protocol, someone in the community can help them put it together.
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**29. What language are the queries written in?**
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Queries are written in R and SQL. The [SqlRender](https://github.com/OHDSI/sqlrender) package can translate any query written in a templated SQL Server-like dialect to any of the supported RDBMS environments, including Postgresql, Oracle, Redshift, Parallel Data Warehouse, Hadoop Impala, Google BigQuery, and Netezza.
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**30. How do the queries get to the data partners and how are they run once there?**
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OHDSI runs as a distributed data network. All analyses are publicly available and can be downloaded to run at each site. The packages can be run locally and, at the data partner’s discretion, aggregate results can be shared with the study coordinator.
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Data partners can also make use of one of OHDSI's open-source tools called [ARACHNE](https://github.com/OHDSI/arachne), a tool to facilitate distributed network analytics against the OMOP CDM.
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@ -1,7 +1,7 @@
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***OMOP Common Data Model v5.2 Specifications***
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***OMOP Common Data Model v5.3 Specifications***
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<br>*Authors: Christian Reich, Patrick Ryan, Rimma Belenkaya, Karthik Natarajan, Clair Blacketer*
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<br>*12 July 2017*
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||||
<br>*3 January 2018*
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Welcome to the Common Data Model wiki! This wiki houses all of the documentation for the latest version as well as changes added with each release. You can find a pdf added to each [release](https://github.com/OHDSI/CommonDataModel/releases) with a historical version of the wiki as it was at the time of the release. You can navigate the pages using the table of contents below or the links to the right.
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@ -13,6 +13,7 @@ Welcome to the Common Data Model wiki! This wiki houses all of the documentation
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|||
<br> [The Role of the Common Data Model](wiki/The-Role-of-the-Common-Data-Model)
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||||
<br> [Design Principles](wiki/Design-Principles)
|
||||
<br> [Data Model Conventions](wiki/Data-Model-Conventions)
|
||||
<br> [Frequently Asked Questions](wiki/Frequently-Asked-Questions)
|
||||
<br>
|
||||
<br>**[Glossary of Terms](wiki/Glossary-of-Terms)**
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||||
<br>
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||||
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@ -32,6 +33,7 @@ Welcome to the Common Data Model wiki! This wiki houses all of the documentation
|
|||
<br>
|
||||
<br>**[Standardized Metadata](wiki/Standardized-Metadata)**
|
||||
<br>[CDM_SOURCE](wiki/CDM_SOURCE)
|
||||
<br>[METADATA](wiki/METADATA)
|
||||
<br>
|
||||
<br>**[Standardized Clinical Data Tables](Standardized-Clinical-Data-Tables)**
|
||||
<br>[PERSON](wiki/PERSON)
|
||||
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@ -39,6 +41,7 @@ Welcome to the Common Data Model wiki! This wiki houses all of the documentation
|
|||
<br>[SPECIMEN](wiki/SPECIMEN)
|
||||
<br>[DEATH](wiki/DEATH)
|
||||
<br>[VISIT_OCCURRENCE](wiki/VISIT_OCCURRENCE)
|
||||
<br>[VISIT_DETAIL](wiki/VISIT_DETAIL)
|
||||
<br>[PROCEDURE_OCCURRENCE](wiki/PROCEDURE_OCCURRENCE)
|
||||
<br>[DRUG_EXPOSURE](wiki/DRUG_EXPOSURE)
|
||||
<br>[DEVICE_EXPOSURE](wiki/DEVICE_EXPOSURE)
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||||
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@ -16,11 +16,11 @@ Field|Required|Type|Description
|
|||
| stop_reason | No | varchar(20) | The reason that the condition was no longer present, as indicated in the source data. |
|
||||
| provider_id | No | integer | A foreign key to the Provider in the PROVIDER table who was responsible for capturing (diagnosing) the Condition. |
|
||||
| visit_occurrence_id | No | integer | A foreign key to the visit in the VISIT_OCCURRENCE table during which the Condition was determined (diagnosed). |
|
||||
| visit_detail_id | No | integer | A foreign key to the visit in the VISIT_DETAIL table during which the Condition was determined (diagnosed). | visit_detail_id | No | integer | A foreign key to the visit in the VISIT_DETAIL table during which the Condition was determined (diagnosed). |
|
||||
| visit_detail_id | No | integer | A foreign key to the visit in the VISIT_DETAIL table during which the Condition was determined (diagnosed). |
|
||||
| condition_source_value | No | varchar(50) | The source code for the condition as it appears in the source data. This code is mapped to a standard condition concept in the Standardized Vocabularies and the original code is stored here for reference. |
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||||
| condition_source_concept_id | No | integer | A foreign key to a Condition Concept that refers to the code used in the source. |
|
||||
| condition_status_source_value | No | varchar(50) | The source code for the condition status as it appears in the source data. |
|
||||
| condition_status_concept_id | No | integer | A foreign key to the predefined Concept in the Standard Vocabulary reflecting the condition status | |
|
||||
| condition_status_concept_id | No | integer | A foreign key to the predefined Concept in the Standard Vocabulary reflecting the condition status |
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||||
|
||||
### Conventions
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||||
|
||||
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|||
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@ -7,7 +7,7 @@ Field|Required|Type|Description
|
|||
|measurement_concept_id|Yes|integer|A foreign key to the standard measurement concept identifier in the Standardized Vocabularies.|
|
||||
|measurement_date|Yes|date|The date of the Measurement.|
|
||||
|measurement_datetime|No|datetime|The date and time of the Measurement. Some database systems don't have a datatype of time. To accomodate all temporal analyses, datatype datetime can be used (combining measurement_date and measurement_time [forum discussion](http://forums.ohdsi.org/t/date-time-and-datetime-problem-and-the-world-of-hours-and-1day/314))|
|
||||
|measurement_time |No|varchar(10)|The time of the Measurement. This is present for backwards compatibility and will deprecated in an upcoming version|
|
||||
|measurement_time |No|varchar(10)|The time of the Measurement. This is present for backwards compatibility and will be deprecated in an upcoming version|
|
||||
|measurement_type_concept_id|Yes|integer|A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the provenance from where the Measurement record was recorded.|
|
||||
|operator_concept_id|No|integer|A foreign key identifier to the predefined Concept in the Standardized Vocabularies reflecting the mathematical operator that is applied to the value_as_number. Operators are <, <=, =, >=, >.|
|
||||
|value_as_number|No|float|A Measurement result where the result is expressed as a numeric value.|
|
||||
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|
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@ -12,8 +12,8 @@ note_nlp_concept_id | No | integer | A foreign key to the predefined Concept i
|
|||
note_nlp_source_concept_id | No | integer | A foreign key to a Concept that refers to the code in the source vocabulary used by the NLP system
|
||||
nlp_system | No | varchar(250) | Name and version of the NLP system that extracted the term.Useful for data provenance.
|
||||
nlp_date | Yes | date | The date of the note processing.Useful for data provenance.
|
||||
nlp_date_time | No | datetime | The date and time of the note processing. Useful for data provenance.
|
||||
term_exists | No | varchar(1) | A summary modifier that signifies presence or absence of the term for a given patient. Useful for quick querying. *
|
||||
nlp_datetime | No | datetime | The date and time of the note processing. Useful for data provenance.
|
||||
term_exists | No | varchar(1) | A summary modifier that signifies presence or absence of the term for a given patient. Useful for quick querying.
|
||||
term_temporal | No | varchar(50) | An optional time modifier associated with the extracted term. (for now “past” or “present” only). Standardize it later.
|
||||
term_modifiers | No | varchar(2000) | A compact description of all the modifiers of the specific term extracted by the NLP system. (e.g. “son has rash” ? “negated=no,subject=family, certainty=undef,conditional=false,general=false”).
|
||||
|
||||
|
|
|
|||
|
|
@ -3,6 +3,7 @@
|
|||
[SPECIMEN](https://github.com/OHDSI/CommonDataModel/wiki/SPECIMEN)
|
||||
[DEATH](https://github.com/OHDSI/CommonDataModel/wiki/DEATH)
|
||||
[VISIT_OCCURRENCE](https://github.com/OHDSI/CommonDataModel/wiki/VISIT_OCCURRENCE)
|
||||
[VISIT_DETAIL](https://github.com/OHDSI/CommonDataModel/wiki/VISIT_DETAIL)
|
||||
[PROCEDURE_OCCURRENCE](https://github.com/OHDSI/CommonDataModel/wiki/PROCEDURE_OCCURRENCE)
|
||||
[DRUG_EXPOSURE](https://github.com/OHDSI/CommonDataModel/wiki/DRUG_EXPOSURE)
|
||||
[DEVICE_EXPOSURE](https://github.com/OHDSI/CommonDataModel/wiki/DEVICE_EXPOSURE)
|
||||
|
|
|
|||
|
|
@ -5,16 +5,16 @@ Field|Required|Type|Description
|
|||
:------------------------|:--------|:-----|:-------------------------------------------------
|
||||
|visit_detail_id |Yes|integer|A unique identifier for each Person's visit or encounter at a healthcare provider.|
|
||||
|person_id |Yes|integer|A foreign key identifier to the Person for whom the visit is recorded. The demographic details of that Person are stored in the PERSON table.|
|
||||
|visit_concept_id |Yes|integer|A foreign key that refers to a visit Concept identifier in the Standardized Vocabularies.|
|
||||
|visit_start_date |Yes|date|The start date of the visit.|
|
||||
|visit_start_datetime |No|datetime|The date and time of the visit started.|
|
||||
|visit_end_date |Yes|date|The end date of the visit. If this is a one-day visit the end date should match the start date.|
|
||||
|visit_end_datetime |No|datetime|The date and time of the visit end.|
|
||||
|visit_type_concept_id |Yes|Integer|A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the type of source data from which the visit record is derived.|
|
||||
|visit_detail_concept_id |Yes|integer|A foreign key that refers to a visit Concept identifier in the Standardized Vocabularies.|
|
||||
|visit_detail_start_date |Yes|date|The start date of the visit.|
|
||||
|visit_detail_start_datetime |No|datetime|The date and time of the visit started.|
|
||||
|visit_detail_end_date |Yes|date|The end date of the visit. If this is a one-day visit the end date should match the start date.|
|
||||
|visit_detail_end_datetime |No|datetime|The date and time of the visit end.|
|
||||
|visit_detail_type_concept_id |Yes|Integer|A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the type of source data from which the visit record is derived.|
|
||||
|provider_id |No|integer|A foreign key to the provider in the provider table who was associated with the visit.|
|
||||
|care_site_id |No|integer|A foreign key to the care site in the care site table that was visited.|
|
||||
|visit_source_value |No|string(50)|The source code for the visit as it appears in the source data.|
|
||||
|visit_source_concept_id |No|Integer|A foreign key to a Concept that refers to the code used in the source.|
|
||||
|visit_detail_source_value |No|string(50)|The source code for the visit as it appears in the source data.|
|
||||
|visit_detail_source_concept_id |No|Integer|A foreign key to a Concept that refers to the code used in the source.|
|
||||
|admitting_source_value | No|Varchar(50)| The source code for the admitting source as it appears in the source data.|
|
||||
|admitting_source_concept_id |No |Integer |A foreign key to the predefined concept in the Place of Service Vocabulary reflecting the admitting source for a visit.|
|
||||
|discharge_to_source_value | No| Varchar(50)| The source code for the discharge disposition as it appears in the source data.|
|
||||
|
|
@ -43,6 +43,6 @@ Field|Required|Type|Description
|
|||
|
||||
Each record within VISIT_DETAIL may be related to each other, sequentially –> ER leading to ICU leading to medical floor, leading to rehabilitation, or in hierarchical parent-child visit –> a visit for dialysis while in ICU.
|
||||
|
||||
Note the CONCEPT_ID for visits is 8, and is shared between VISIT_OCCURRENCE and VISIT_DETAIL in OMOP CDM. The key deviation from VISIT_OCCURRENCE is
|
||||
Note the CONCEPT_ID for visit domain is 8, and it is shared between VISIT_OCCURRENCE and VISIT_DETAIL in OMOP CDM. The key deviation from VISIT_OCCURRENCE is
|
||||
- self-referencing key: a new foreign key visit_detail_parent_id allows self referencing for nested visits.
|
||||
- VISIT_DETAIL points to its parent record in the VISIT_OCCURRENCE table (visit_occurrence_id)
|
||||
|
|
|
|||
|
|
@ -37,6 +37,6 @@ Field|Required|Type|Description
|
|||
* Patient died: 4216643
|
||||
* Absent without leave: 44814693
|
||||
* Patient self-discharge against medical advice: 4021968
|
||||
* In the case where a patient died during admission (Visit_Occurrence.discharge_disposition_concept_id = 4216643 Patient died), a record in the Death table should be created with death_type_concept_id = 44818516 (EHR discharge status "Expired").
|
||||
* In the case where a patient died during admission (Visit_Occurrence.discharge_disposition_concept_id = 4216643 "Patient died"), a record in the Death table should be created with death_type_concept_id = 44818516 (EHR discharge status "Expired").
|
||||
* PRECEDING_VISIT_ID can be used to link a visit immediately preceding the current visit
|
||||
* Some EMR systems combine emergency room followed by inpatient admission into one visit, and it is close to impossible to separate the two. To annotate this visit type, a new visit concept "Emergency Room and Inpatient Visit" was added (CONCEPT_ID 262).
|
||||
|
|
@ -1,30 +1,25 @@
|
|||
The PAYER_PLAN_PERIOD table captures details of the period of time that a Person is continuously enrolled under a specific health Plan benefit structure, from a certain sponsor, from a given Payer and within the same family. Each Person receiving healthcare is typically covered by a health benefit plan, which determines what health care services will be paid for (fully or partially). A sponsor (usually an employer group or government or the payer itself) holds the financial responsibility for the reimbursement, and the financial transaction of adjudicating the eligible plan-benefit and reimbursing the service provider is administered by the payer. In each plan the details of the health benefits are defined for the Person or her family, and the health benefit Plan might change over time typically with increasing utilization (reaching certain cost thresholds such as deductibles), plan availability and purchasing choices of the Person. The unique combinations of Payer organizations, health benefit Plans and time periods in which they are valid for a Person are recorded in this table.
|
||||
The PAYER_PLAN_PERIOD table captures details of the period of time that a Person is continuously enrolled under a specific health Plan benefit structure from a given Payer. Each Person receiving healthcare is typically covered by a health benefit plan, which pays for (fully or partially), or directly provides, the care. These benefit plans are provided by payers, such as health insurances or state or government agencies. In each plan the details of the health benefits are defined for the Person or her family, and the health benefit Plan might change over time typically with increasing utilization (reaching certain cost thresholds such as deductibles), plan availability and purchasing choices of the Person. The unique combinations of Payer organizations, health benefit Plans and time periods in which they are valid for a Person are recorded in this table.
|
||||
|
||||
Field|Required|Type|Description
|
||||
:------------------------------|:--------|:------------|:----------------------------------------------
|
||||
|payer_plan_period_id|Yes|integer|A identifier for each unique combination of payer, sponsor, plan, family code and time span.|
|
||||
|payer_plan_period_id |Yes|integer|A identifier for each unique combination of payer, plan, family code and time span.|
|
||||
|person_id |Yes|integer|A foreign key identifier to the Person covered by the payer. The demographic details of that Person are stored in the PERSON table.|
|
||||
|payer_plan_period_start_date |Yes|date|The start date of the payer plan period.|
|
||||
|payer_plan_period_end_date |Yes|date|The end date of the payer plan period.|
|
||||
|payer_concept_id |No|integer|A foreign key that refers to a Standard Payer concept identifiers in the Standardized Vocabularies|
|
||||
|payer_concept_id |No|integer|A foreign key that refers to a standard Payer concept identifier in the Standarized Vocabularies|
|
||||
|payer_source_value |No|varchar(50)|The source code for the payer as it appears in the source data.|
|
||||
|payer_source_concept_id |No|integer|A foreign key to a payer concept that refers to the code used in the source.|
|
||||
|plan_concept_id|No|integer|A foreign key that refers to a Standard plan that represents the health benefit plan in the Standardized Vocabularies|
|
||||
|plan_concept_id |No|integer|A foreign key that refers to a standard plan concept identifier that represents the health benefit plan in the Standardized Vocabularies|
|
||||
|plan_source_value |No|varchar(50)|The source code for the Person's health benefit plan as it appears in the source data.|
|
||||
| plan_source_concept_id |No|integer|A foreign key to a plan concept that refers to the code used in the source.|
|
||||
| sponsor_concept_id |No|integer|A foreign key that refers to a Standard plan that represents the sponsor in the Standardized Vocabularies|
|
||||
|plan_source_concept_id |No|integer|A foreign key to a plan concept that refers to the plan code used in the source data.|
|
||||
|sponsor_concept_id |No|integer|A foreign key that refers to a concept identifier that represents the sponsor in the Standardized Vocabularies.|
|
||||
|sponsor_source_value |No|varchar(50)|The source code for the Person's sponsor of the health plan as it appears in the source data.|
|
||||
| sponsor_source_concept_id*|No|integer|A foreign key to a sponsor concept that refers to the code used in the source.|
|
||||
|sponsor_source_concept_id |No|integer|A foreign key to a sponsor concept that refers to the sponsor code used in the source data.|
|
||||
|family_source_value |No|varchar(50)|The source code for the Person's family as it appears in the source data.|
|
||||
| stop_reason_concept_id |No|integer|A foreign key that refers to a Standard termination reason that represents the reason for the termination in the Standardized Vocabularies.|
|
||||
| stop_reason_source_value |No|varchar(50)|The reason for stop-coverage of the record.|
|
||||
|stop_reason_concept_id |No|integer|A foreign key that refers to a standard termination reason that represents the reason for the termination in the Standardized Vocabularies.|
|
||||
|stop_reason_source_value |No|varchar(50)|The reason for stop-coverage as it appears in the source data.|
|
||||
|stop_reason_source_concept_id |No|integer|A foreign key to a stop-coverage concept that refers to the code used in the source.|
|
||||
|
||||
### Conventions
|
||||
* Different Payers have different designs for their health benefit Plans. The PAYER_PLAN_PERIOD table does not capture all details of the plan design or the relationship between Plans or the cost of healthcare triggering a change from one Plan to another. However, it allows identifying the unique combination of Payer (insurer), Plan (determining healthcare benefits and limits), Sponsor (holds the financial risk), Family and Person. Typically, depending on healthcare utilization, a Person may have one or many subsequent Plans during coverage by a single Payer.
|
||||
* **sponsor:** who finances the transaction.
|
||||
* **payer:** who administers the transaction.
|
||||
* **plan:** the actual contract being administered by the payer and agreed by the sponsor.
|
||||
* **stop reason:** reason for termination of the contract
|
||||
* Source values of the Payer, Plan, Sponsor, Family are captured as the respective _source_value. Concept_id's are used to support standardized analysis, similar to other OMOP CDM tables that use _source_concept_id and _concept_id.
|
||||
* Typically, family members are covered under the same Plan as the Person. In those cases, the payer_source_value, plan_source_value and family_source_value are identical
|
||||
* Different Payers have different designs for their health benefit Plans. The PAYER_PLAN_PERIOD table does not capture all details of the plan design or the relationship between Plans or the cost of healthcare triggering a change from one Plan to another. However, it allows identifying the unique combination of Payer (insurer), Plan (determining healthcare benefits and limits) and Person. Typically, depending on healthcare utilization, a Person may have one or many subsequent Plans during coverage by a single Payer.
|
||||
* Typically, family members are covered under the same Plan as the Person. In those cases, the payer_source_value, plan_source_value and family_source_value are identical.
|
||||
|
|
@ -1,7 +1,7 @@
|
|||
The ATTRIBUTE_DEFINITION table contains records defining Attributes, or covariates, to members of a Cohort through an associated description and syntax and upon instantiation (execution of the algorithm) placed into the COHORT_ATTRIBUTE table. Attributes are derived elements that can be selected or calculated for a subject in a Cohort. The ATTRIBUTE_DEFINITION table provides a standardized structure for maintaining the rules governing the calculation of covariates for a subject in a Cohort, and can store operational programming code to instantiate the Attributes for a given Cohort within the OMOP Common Data Model.
|
||||
|
||||
Field|Required|Type|Description
|
||||
:-------------------------|:--------|:-----|:--------------------------------------
|
||||
:-------------------------|:------|:--------------|:--------------------------------------
|
||||
|attribute_definition_id|Yes|integer|A unique identifier for each Attribute.|
|
||||
|attribute_name|Yes|varchar(255)|A short description of the Attribute.|
|
||||
|attribute_description|No|varchar(MAX)|A complete description of the Attribute definition|
|
||||
|
|
|
|||
|
|
@ -1,14 +1,14 @@
|
|||
The COHORT_DEFINITION table contains records defining a Cohort derived from the data through the associated description and syntax and upon instantiation (execution of the algorithm) placed into the COHORT table. Cohorts are a set of subjects that satisfy a given combination of inclusion criteria for a duration of time. The COHORT_DEFINITION table provides a standardized structure for maintaining the rules governing the inclusion of a subject into a cohort, and can store operational programming code to instantiate the cohort within the OMOP Common Data Model.
|
||||
|
||||
Field|Required|Type|Description
|
||||
:------------------------------|:--------|:-----|:-----------------------------------------------
|
||||
:------------------------------|:--------|:--------------|:-----------------------------------------------
|
||||
|cohort_definition_id|Yes|integer|A unique identifier for each Cohort.|
|
||||
|cohort_definition_name|Yes|varchar(255)|A short description of the Cohort.|
|
||||
|cohort_definition_description|No|varchar(MAX)|A complete description of the Cohort definition|
|
||||
|definition_type_concept_id|Yes|integer|Type defining what kind of Cohort Definition the record represents and how the syntax may be executed|
|
||||
|cohort_definition_syntax|No|varchar(MAX)|Syntax or code to operationalize the Cohort definition|
|
||||
|subject_concept_id|Yes|integer|A foreign key to the Concept to which defines the domain of subjects that are members of the cohort (e.g., Person, Provider, Visit).|
|
||||
|cohort_initiation_date|No|Date|A date to indicate when the Cohort was instantiated in the COHORT table|
|
||||
|cohort_initiation_date|No|Date|A date to indicate when the Cohort was initiated in the COHORT table|
|
||||
|
||||
### Conventions
|
||||
* The cohort_definition_syntax does not prescribe any specific syntax or programming language. Typically, it would be any flavor SQL, a cohort definition language, or a free-text description of the algorithm.
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
The CONCEPT_SYNONYM table is used to store alternate names and descriptions for Concepts.
|
||||
|
||||
|Field|Required|Type|Description|
|
||||
Field|Required|Type|Description
|
||||
:---------------------|:---------|:------------|:------------------------
|
||||
|concept_id|Yes|Integer|A foreign key to the Concept in the CONCEPT table.|
|
||||
|concept_synonym_name|Yes|varchar(1000)|The alternative name for the Concept.|
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
The RELATIONSHIP table provides a reference list of all types of relationships that can be used to associate any two concepts in the CONCEPT_RELATIONSHP table.
|
||||
|
||||
|Field|Required|Type|Description|
|
||||
Field|Required|Type|Description
|
||||
:-----------------------|:--------|:------------|:-----------------------------------------
|
||||
|relationship_id|Yes|varchar(20)| The type of relationship captured by the relationship record.|
|
||||
|relationship_name|Yes|varchar(255)| The text that describes the relationship type.|
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@ Field|Required|Type|Description
|
|||
|vocabulary_id|Yes|varchar(20)|A unique identifier for each Vocabulary, such as ICD9CM, SNOMED, Visit.|
|
||||
|vocabulary_name|Yes|varchar(255)|The name describing the vocabulary, for example "International Classification of Diseases, Ninth Revision, Clinical Modification, Volume 1 and 2 (NCHS)" etc.|
|
||||
|vocabulary_reference|Yes|varchar(255)|External reference to documentation or available download of the about the vocabulary.|
|
||||
|vocabulary_version|No|varchar(255)|Version of the Vocabulary as indicated in the source.|
|
||||
|vocabulary_version|Yes|varchar(255)|Version of the Vocabulary as indicated in the source.|
|
||||
|vocabulary_concept_id|Yes|integer|A foreign key that refers to a standard concept identifier in the CONCEPT table for the Vocabulary the VOCABULARY record belongs to.|
|
||||
|
||||
### Conventions
|
||||
|
|
|
|||
|
|
@ -1 +1 @@
|
|||
***OMOP Common Data Model v5.2 Specifications***
|
||||
***OMOP Common Data Model v5.3.1 Specifications 14June2018***
|
||||
|
|
@ -6,6 +6,7 @@
|
|||
* [The Role of the Common Data Model](https://github.com/OHDSI/CommonDataModel/wiki/The-Role-of-the-Common-Data-Model)
|
||||
* [Design Principles](https://github.com/OHDSI/CommonDataModel/wiki/Design-Principles)
|
||||
* [Data Model Conventions](https://github.com/OHDSI/CommonDataModel/wiki/Data-Model-Conventions)
|
||||
* [Frequently Asked Questions](https://github.com/OHDSI/CommonDataModel/wiki/Frequently-Asked-Questions)
|
||||
|
||||
**[Glossary of Terms](https://github.com/OHDSI/CommonDataModel/wiki/Glossary-of-Terms)**
|
||||
|
||||
|
|
@ -25,6 +26,7 @@
|
|||
|
||||
**[Standardized Metadata](https://github.com/OHDSI/CommonDataModel/wiki/Standardized-Metadata)**
|
||||
* [CDM_SOURCE](https://github.com/OHDSI/CommonDataModel/wiki/CDM_SOURCE)
|
||||
* [METADATA](https://github.com/OHDSI/CommonDataModel/wiki/METADATA)
|
||||
|
||||
**[Standardized Clinical Data Tables](https://github.com/OHDSI/CommonDataModel/wiki/Standardized-Clinical-Data-Tables)**
|
||||
* [PERSON](https://github.com/OHDSI/CommonDataModel/wiki/PERSON)
|
||||
|
|
@ -32,6 +34,7 @@
|
|||
* [SPECIMEN](https://github.com/OHDSI/CommonDataModel/wiki/SPECIMEN)
|
||||
* [DEATH](https://github.com/OHDSI/CommonDataModel/wiki/DEATH)
|
||||
* [VISIT_OCCURRENCE](https://github.com/OHDSI/CommonDataModel/wiki/VISIT_OCCURRENCE)
|
||||
* [VISIT_DETAIL](https://github.com/OHDSI/CommonDataModel/wiki/VISIT_DETAIL)
|
||||
* [PROCEDURE_OCCURRENCE](https://github.com/OHDSI/CommonDataModel/wiki/PROCEDURE_OCCURRENCE)
|
||||
* [DRUG_EXPOSURE](https://github.com/OHDSI/CommonDataModel/wiki/DRUG_EXPOSURE)
|
||||
* [DEVICE_EXPOSURE](https://github.com/OHDSI/CommonDataModel/wiki/DEVICE_EXPOSURE)
|
||||
|
|
@ -49,7 +52,7 @@
|
|||
|
||||
**[Standardized Health Economics Data Tables](https://github.com/OHDSI/CommonDataModel/wiki/Standardized-Health-Economics-Data-Tables)**
|
||||
* [PAYER_PLAN_PERIOD](https://github.com/OHDSI/CommonDataModel/wiki/PAYER_PLAN_PERIOD)
|
||||
* [COST](wiki/COST)
|
||||
* [COST](https://github.com/OHDSI/CommonDataModel/wiki/COST)
|
||||
|
||||
**[Standardized Derived Elements](https://github.com/OHDSI/CommonDataModel/wiki/Standardized-Derived-Elements)**
|
||||
* [COHORT](https://github.com/OHDSI/CommonDataModel/wiki/COHORT)
|
||||
|
|
|
|||
|
|
@ -6,7 +6,7 @@
|
|||
|
||||
#
|
||||
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# Licensed under the Apache License, Version 2.0 (the "License")
|
||||
|
||||
# you may not use this file except in compliance with the License.
|
||||
|
||||
|
|
@ -51,11 +51,11 @@
|
|||
|
||||
|
||||
|
||||
impala script to create OMOP common data model version 5.3
|
||||
impala script to create OMOP common data model version 5.3.1
|
||||
|
||||
|
||||
|
||||
last revised: 6-Nov-2017
|
||||
last revised: 14-JUNE-2018
|
||||
|
||||
|
||||
|
||||
|
|
@ -590,15 +590,15 @@ CREATE TABLE visit_detail
|
|||
|
||||
visit_detail_concept_id INTEGER,
|
||||
|
||||
visit_start_date TIMESTAMP,
|
||||
visit_detail_start_date TIMESTAMP,
|
||||
|
||||
visit_start_datetime TIMESTAMP,
|
||||
visit_detail_start_datetime TIMESTAMP,
|
||||
|
||||
visit_end_date TIMESTAMP,
|
||||
visit_detail_end_date TIMESTAMP,
|
||||
|
||||
visit_end_datetime TIMESTAMP,
|
||||
visit_detail_end_datetime TIMESTAMP,
|
||||
|
||||
visit_type_concept_id INTEGER,
|
||||
visit_detail_type_concept_id INTEGER,
|
||||
|
||||
provider_id INTEGER,
|
||||
|
||||
|
|
@ -610,9 +610,9 @@ CREATE TABLE visit_detail
|
|||
|
||||
preceding_visit_detail_id INTEGER,
|
||||
|
||||
visit_source_value VARCHAR(50),
|
||||
visit_detail_source_value VARCHAR(50),
|
||||
|
||||
visit_source_concept_id INTEGER,
|
||||
visit_detail_source_concept_id INTEGER,
|
||||
|
||||
admitting_source_value VARCHAR(50),
|
||||
|
||||
|
|
|
|||
|
|
@ -2,7 +2,7 @@
|
|||
# Copyright 2017-11 Observational Health Data Sciences and Informatics
|
||||
#
|
||||
#
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# Licensed under the Apache License, Version 2.0 (the "License")
|
||||
# you may not use this file except in compliance with the License.
|
||||
# You may obtain a copy of the License at
|
||||
#
|
||||
|
|
@ -26,9 +26,9 @@
|
|||
####### # # ####### # ##### ###### # # ## ##### ### #####
|
||||
|
||||
|
||||
netezza script to create OMOP common data model version 5.3
|
||||
netezza script to create OMOP common data model version 5.3.1
|
||||
|
||||
last revised: 8-Jan-2018
|
||||
last revised: 14-JUNE-2018
|
||||
|
||||
Authors: Patrick Ryan, Christian Reich, Clair Blacketer
|
||||
|
||||
|
|
@ -351,18 +351,18 @@ CREATE TABLE visit_detail
|
|||
visit_detail_id INTEGER NOT NULL ,
|
||||
person_id INTEGER NOT NULL ,
|
||||
visit_detail_concept_id INTEGER NOT NULL ,
|
||||
visit_start_date DATE NOT NULL ,
|
||||
visit_start_datetime DATETIME NULL ,
|
||||
visit_end_date DATE NOT NULL ,
|
||||
visit_end_datetime DATETIME NULL ,
|
||||
visit_type_concept_id INTEGER NOT NULL ,
|
||||
visit_detail_start_date DATE NOT NULL ,
|
||||
visit_detail_start_datetime DATETIME NULL ,
|
||||
visit_detail_end_date DATE NOT NULL ,
|
||||
visit_detail_end_datetime DATETIME NULL ,
|
||||
visit_detail_type_concept_id INTEGER NOT NULL ,
|
||||
provider_id INTEGER NULL ,
|
||||
care_site_id INTEGER NULL ,
|
||||
admitting_source_concept_id INTEGER NULL ,
|
||||
discharge_to_concept_id INTEGER NULL ,
|
||||
preceding_visit_detail_id INTEGER NULL ,
|
||||
visit_source_value VARCHAR(50) NULL ,
|
||||
visit_source_concept_id INTEGER NULL ,
|
||||
visit_detail_source_value VARCHAR(50) NULL ,
|
||||
visit_detail_source_concept_id INTEGER NULL ,
|
||||
admitting_source_value VARCHAR(50) NULL ,
|
||||
discharge_to_source_value VARCHAR(50) NULL ,
|
||||
visit_detail_parent_id INTEGER NULL ,
|
||||
|
|
|
|||
|
|
@ -1,407 +0,0 @@
|
|||
"field","required","type","description","table"
|
||||
"condition_occurrence_id","Yes","INTEGER","A unique identifier for each Condition Occurrence event.","condition_occurrence"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the Person who is experiencing the condition. The demographic details of that Person are stored in the PERSON table.","condition_occurrence"
|
||||
"condition_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Condition Concept identifier in the Standardized Vocabularies.","condition_occurrence"
|
||||
"condition_start_date","Yes","DATE","The date when the instance of the Condition is recorded.","condition_occurrence"
|
||||
"condition_start_datetime","No","DATETIME","The date and time when the instance of the Condition is recorded.","condition_occurrence"
|
||||
"condition_end_date","No","DATE","The date when the instance of the Condition is considered to have ended.","condition_occurrence"
|
||||
"condition_end_datetime","No","DATE","The date when the instance of the Condition is considered to have ended.","condition_occurrence"
|
||||
"condition_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the source data from which the condition was recorded, the level of standardization, and the type of occurrence.","condition_occurrence"
|
||||
"stop_reason","No","VARCHAR(20)","The reason that the condition was no longer present, as indicated in the source data.","condition_occurrence"
|
||||
"provider_id","No","INTEGER","A foreign key to the Provider in the PROVIDER table who was responsible for capturing (diagnosing) the Condition.","condition_occurrence"
|
||||
"visit_occurrence_id","No","INTEGER","A foreign key to the visit in the VISIT_OCCURRENCE table during which the Condition was determined (diagnosed).","condition_occurrence"
|
||||
"visit_detail_id","No","INTEGER","A foreign key to the visit in the VISIT_DETAIL table during which the Condition was determined (diagnosed).","condition_occurrence"
|
||||
"condition_source_value","No","VARCHAR(50)","The source code for the condition as it appears in the source data. This code is mapped to a standard condition concept in the Standardized Vocabularies and the original code is stored here for reference.","condition_occurrence"
|
||||
"condition_source_concept_id","No","INTEGER","A foreign key to a Condition Concept that refers to the code used in the source.","condition_occurrence"
|
||||
"condition_status_source_value","No","VARCHAR(50)","The source code for the condition status as it appears in the source data.","condition_occurrence"
|
||||
"condition_status_concept_id","No","INTEGER","A foreign key to the predefined Concept in the Standard Vocabulary reflecting the condition status","condition_occurrence"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the deceased person. The demographic details of that person are stored in the person table.","death"
|
||||
"death_date","Yes","DATE","The date the person was deceased. If the precise date including day or month is not known or not allowed, December is used as the default month, and the last day of the month the default day.","death"
|
||||
"death_datetime","No","DATETIME","The date and time the person was deceased. If the precise date including day or month is not known or not allowed, December is used as the default month, and the last day of the month the default day.","death"
|
||||
"death_type_concept_id","Yes","INTEGER","A foreign key referring to the predefined concept identifier in the Standardized Vocabularies reflecting how the death was represented in the source data.","death"
|
||||
"cause_concept_id","No","INTEGER","A foreign key referring to a standard concept identifier in the Standardized Vocabularies for conditions.","death"
|
||||
"cause_source_value","No","VARCHAR(50)","The source code for the cause of death as it appears in the source data. This code is mapped to a standard concept in the Standardized Vocabularies and the original code is, stored here for reference.","death"
|
||||
"cause_source_concept_id","No","INTEGER","A foreign key to the concept that refers to the code used in the source. Note, this variable name is abbreviated to ensure it will be allowable across database platforms.","death"
|
||||
"device_exposure_id","Yes","INTEGER","A system-generated unique identifier for each Device Exposure.","device_exposure"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the Person who is subjected to the Device. The demographic details of that person are stored in the Person table.","device_exposure"
|
||||
"device_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Concept identifier in the Standardized Vocabularies for the Device concept.","device_exposure"
|
||||
"device_exposure_start_date","Yes","DATE","The date the Device or supply was applied or used.","device_exposure"
|
||||
"device_exposure_start_datetime","No","DATETIME","The date and time the Device or supply was applied or used.","device_exposure"
|
||||
"device_exposure_end_date","No","DATE","The date the Device or supply was removed from use.","device_exposure"
|
||||
"device_exposure_end_datetime","No","DATETIME","The date and time the Device or supply was removed from use.","device_exposure"
|
||||
"device_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the type of Device Exposure recorded. It indicates how the Device Exposure was represented in the source data.","device_exposure"
|
||||
"unique_device_id","No","VARCHAR(50)","A UDI or equivalent identifying the instance of the Device used in the Person.","device_exposure"
|
||||
"quantity","No","INTEGER","The number of individual Devices used for the exposure.","device_exposure"
|
||||
"provider_id","No","INTEGER","A foreign key to the provider in the PROVIDER table who initiated of administered the Device.","device_exposure"
|
||||
"visit_occurrence_id","No","INTEGER","A foreign key to the visit in the VISIT_OCCURRENCE table during which the device was used.","device_exposure"
|
||||
"visit_detail_id","No","INTEGER","A foreign key to the visit detail in the VISIT_DETAIL table during which the Drug Exposure was initiated.","device_exposure"
|
||||
"device_source_value","No","VARCHAR(50)","The source code for the Device as it appears in the source data. This code is mapped to a standard Device Concept in the Standardized Vocabularies and the original code is stored here for reference.","device_exposure"
|
||||
"device_source_ concept_id","No","INTEGER","A foreign key to a Device Concept that refers to the code used in the source.","device_exposure"
|
||||
"drug_exposure_id","Yes","INTEGER","A system-generated unique identifier for each Drug utilization event.","drug_exposure"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the person who is subjected to the Drug. The demographic details of that person are stored in the person table.","drug_exposure"
|
||||
"drug_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Concept identifier in the Standardized Vocabularies for the Drug concept.","drug_exposure"
|
||||
"drug_exposure_start_date","Yes","DATE","The start date for the current instance of Drug utilization. Valid entries include a start date of a prescription, the date a prescription was filled, or the date on which a Drug administration procedure was recorded.","drug_exposure"
|
||||
"drug_exposure_start_datetime","No","DATETIME","The start date and time for the current instance of Drug utilization. Valid entries include a start date of a prescription, the date a prescription was filled, or the date on which a Drug administration procedure was recorded.","drug_exposure"
|
||||
"drug_exposure_end_date","Yes","DATE","The end date for the current instance of Drug utilization. It is not available from all sources.","drug_exposure"
|
||||
"drug_exposure_end_datetime","No","DATETIME","The end date and time for the current instance of Drug utilization. It is not available from all sources.","drug_exposure"
|
||||
"verbatim_end_date","No","DATE","The known end date of a drug_exposure as provided by the source","drug_exposure"
|
||||
"drug_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the type of Drug Exposure recorded. It indicates how the Drug Exposure was represented in the source data.","drug_exposure"
|
||||
"stop_reason","No","VARCHAR(20)","The reason the Drug was stopped. Reasons include regimen completed, changed, removed, etc.","drug_exposure"
|
||||
"refills","No","INTEGER","The number of refills after the initial prescription. The initial prescription is not counted, values start with 0.","drug_exposure"
|
||||
"quantity","No","FLOAT","The quantity of drug as recorded in the original prescription or dispensing record.","drug_exposure"
|
||||
"days_supply","No","INTEGER","The number of days of supply of the medication as recorded in the original prescription or dispensing record.","drug_exposure"
|
||||
"sig","No","VARCHAR(MAX)","The directions (""signetur"") on the Drug prescription as recorded in the original prescription (and printed on the container) or dispensing record.","drug_exposure"
|
||||
"route_concept_id","No","INTEGER","A foreign key to a predefined concept in the Standardized Vocabularies reflecting the route of administration.","drug_exposure"
|
||||
"lot_number","No","VARCHAR(50)","An identifier assigned to a particular quantity or lot of Drug product from the manufacturer.","drug_exposure"
|
||||
"provider_id","No","INTEGER","A foreign key to the provider in the PROVIDER table who initiated (prescribed or administered) the Drug Exposure.","drug_exposure"
|
||||
"visit_occurrence_id","No","INTEGER","A foreign key to the Visit in the VISIT_OCCURRENCE table during which the Drug Exposure was initiated.","drug_exposure"
|
||||
"visit_detail_id","No","INTEGER","A foreign key to the Visit Detail in the VISIT_DETAIL table during which the Drug Exposure was initiated.","drug_exposure"
|
||||
"drug_source_value","No","VARCHAR(50)","The source code for the Drug as it appears in the source data. This code is mapped to a Standard Drug concept in the Standardized Vocabularies and the original code is, stored here for reference.","drug_exposure"
|
||||
"drug_source_concept_id","No","INTEGER","A foreign key to a Drug Concept that refers to the code used in the source.","drug_exposure"
|
||||
"route_source_value","No","VARCHAR(50)","The information about the route of administration as detailed in the source.","drug_exposure"
|
||||
"dose_unit_source_value","No","VARCHAR(50)","The information about the dose unit as detailed in the source.","drug_exposure"
|
||||
"domain_concept_id_1","Yes","INTEGER","The concept representing the domain of fact one, from which the corresponding table can be inferred.","fact_relationship"
|
||||
"fact_id_1","Yes","INTEGER","The unique identifier in the table corresponding to the domain of fact one.","fact_relationship"
|
||||
"domain_concept_id_2","Yes","INTEGER","The concept representing the domain of fact two, from which the corresponding table can be inferred.","fact_relationship"
|
||||
"fact_id_2","Yes","INTEGER","The unique identifier in the table corresponding to the domain of fact two.","fact_relationship"
|
||||
"relationship_concept_id","Yes","INTEGER","A foreign key to a Standard Concept ID of relationship in the Standardized Vocabularies.","fact_relationship"
|
||||
"measurement_id","Yes","INTEGER","A unique identifier for each Measurement.","measurement"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the Person about whom the measurement was recorded. The demographic details of that Person are stored in the PERSON table.","measurement"
|
||||
"measurement_concept_id","Yes","INTEGER","A foreign key to the standard measurement concept identifier in the Standardized Vocabularies.","measurement"
|
||||
"measurement_date","Yes","DATE","The date of the Measurement.","measurement"
|
||||
"measurement_datetime","No","DATETIME","The date and time of the Measurement. Some database systems don't have a datatype of time. To accomodate all temporal analyses, datatype datetime can be used (combining measurement_date and measurement_time [forum discussion](http://forums.ohdsi.org/t/date-time-and-datetime-problem-and-the-world-of-hours-and-1day/314))","measurement"
|
||||
"measurement_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the provenance from where the Measurement record was recorded.","measurement"
|
||||
"operator_concept_id","No","INTEGER","A foreign key identifier to the predefined Concept in the Standardized Vocabularies reflecting the mathematical operator that is applied to the value_as_number. Operators are <, <=, =, >=, >.","measurement"
|
||||
"value_as_number","No","FLOAT","A Measurement result where the result is expressed as a numeric value.","measurement"
|
||||
"value_as_concept_id","No","INTEGER","A foreign key to a Measurement result represented as a Concept from the Standardized Vocabularies (e.g., positive/negative, present/absent, low/high, etc.).","measurement"
|
||||
"unit_concept_id","No","INTEGER","A foreign key to a Standard Concept ID of Measurement Units in the Standardized Vocabularies.","measurement"
|
||||
"range_low","No","FLOAT","The lower limit of the normal range of the Measurement result. The lower range is assumed to be of the same unit of measure as the Measurement value.","measurement"
|
||||
"range_high","No","FLOAT","The upper limit of the normal range of the Measurement. The upper range is assumed to be of the same unit of measure as the Measurement value.","measurement"
|
||||
"provider_id","No","INTEGER","A foreign key to the provider in the PROVIDER table who was responsible for initiating or obtaining the measurement.","measurement"
|
||||
"visit_occurrence_id","No","INTEGER","A foreign key to the Visit in the VISIT_OCCURRENCE table during which the Measurement was recorded.","measurement"
|
||||
"visit_detail_id","No","INTEGER","A foreign key to the Visit Detail in the VISIT_DETAIL table during which the Measurement was recorded.","measurement"
|
||||
"measurement_source_value","No","VARCHAR(50)","The Measurement name as it appears in the source data. This code is mapped to a Standard Concept in the Standardized Vocabularies and the original code is stored here for reference.","measurement"
|
||||
"measurement_source_concept_id","No","INTEGER","A foreign key to a Concept in the Standard Vocabularies that refers to the code used in the source.","measurement"
|
||||
"unit_source_value","No","VARCHAR(50)","The source code for the unit as it appears in the source data. This code is mapped to a standard unit concept in the Standardized Vocabularies and the original code is stored here for reference.","measurement"
|
||||
"value_source_value","No","VARCHAR(50)","The source value associated with the content of the value_as_number or value_as_concept_id as stored in the source data.","measurement"
|
||||
"note_id","Yes","INTEGER","A unique identifier for each note.","note"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the Person about whom the Note was recorded. The demographic details of that Person are stored in the PERSON table.","note"
|
||||
"note_date","Yes","DATE","The date the note was recorded.","note"
|
||||
"note_datetime","No","DATETIME","The date and time the note was recorded.","note"
|
||||
"note_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the type, origin or provenance of the Note.","note"
|
||||
"note_class_concept_id","Yes","INTEGER","A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the HL7 LOINC Document Type Vocabulary classification of the note.","note"
|
||||
"note_title","No","VARCHAR(250)","The title of the Note as it appears in the source.","note"
|
||||
"note_text","Yes","VARCHAR(MAX)","The content of the Note.","note"
|
||||
"encoding_concept_id","Yes","INTEGER","A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the note character encoding type","note"
|
||||
"language_concept_id","Yes","INTEGER","A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the language of the note","note"
|
||||
"provider_id","No","INTEGER","A foreign key to the Provider in the PROVIDER table who took the Note.","note"
|
||||
"visit_occurrence_id","No","INTEGER","A foreign key to the Visit in the VISIT_OCCURRENCE table when the Note was taken.","note"
|
||||
"visit_detail_id","No","INTEGER","A foreign key to the Visit in the VISIT_DETAIL table when the Note was taken.","note"
|
||||
"note_source_value","No","VARCHAR(50)","The source value associated with the origin of the Note","note"
|
||||
"note_nlp_id","Yes","INTEGER","A unique identifier for each term extracted from a note.","note_nlp"
|
||||
"note_id","Yes","INTEGER","A foreign key to the Note table note the term was extracted from.","note_nlp"
|
||||
"section_concept_id","No","INTEGER","A foreign key to the predefined Concept in the Standardized Vocabularies representing the section of the extracted term.","note_nlp"
|
||||
"snippet","No","VARCHAR(250)","A small window of text surrounding the term.","note_nlp"
|
||||
"offset","No","VARCHAR(50)","Character offset of the extracted term in the input note.","note_nlp"
|
||||
"lexical_variant","Yes","VARCHAR(250)","Raw text extracted from the NLP tool.","note_nlp"
|
||||
"note_nlp_concept_id","No","INTEGER","A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the normalized concept for the extracted term. Domain of the term is represented as part of the Concept table.","note_nlp"
|
||||
"note_nlp_source_concept_id","No","INTEGER","A foreign key to a Concept that refers to the code in the source vocabulary used by the NLP system","note_nlp"
|
||||
"nlp_system","No","VARCHAR(250)","Name and version of the NLP system that extracted the term.Useful for data provenance.","note_nlp"
|
||||
"nlp_date","Yes","DATE","The date of the note processing.Useful for data provenance.","note_nlp"
|
||||
"nlp_date_time","No","DATETIME","The date and time of the note processing. Useful for data provenance.","note_nlp"
|
||||
"term_exists","No","VARCHAR(1)","A summary modifier that signifies presence or absence of the term for a given patient. Useful for quick querying. *","note_nlp"
|
||||
"term_temporal","No","VARCHAR(50)","An optional time modifier associated with the extracted term. (for now “past” or “present” only). Standardize it later.","note_nlp"
|
||||
"term_modifiers","No","VARCHAR(2000)","A compact description of all the modifiers of the specific term extracted by the NLP system. (e.g. “son has rash” ? “negated=no,subject=family, certainty=undef,conditional=false,general=false”).","note_nlp"
|
||||
"observation_id","Yes","INTEGER","A unique identifier for each observation.","observation"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the Person about whom the observation was recorded. The demographic details of that Person are stored in the PERSON table.","observation"
|
||||
"observation_concept_id","Yes","INTEGER","A foreign key to the standard observation concept identifier in the Standardized Vocabularies.","observation"
|
||||
"observation_date","Yes","DATE","The date of the observation.","observation"
|
||||
"observation_datetime","No","DATETIME","The date and time of the observation.","observation"
|
||||
"observation_type_concept_id","Yes","INTEGER","A foreign key to the predefined concept identifier in the Standardized Vocabularies reflecting the type of the observation.","observation"
|
||||
"value_as_number","No","FLOAT","The observation result stored as a number. This is applicable to observations where the result is expressed as a numeric value.","observation"
|
||||
"value_as_string","No","VARCHAR(60)","The observation result stored as a string. This is applicable to observations where the result is expressed as verbatim text.","observation"
|
||||
"value_as_concept_id","No","INTEGER","A foreign key to an observation result stored as a Concept ID. This is applicable to observations where the result can be expressed as a Standard Concept from the Standardized Vocabularies (e.g., positive/negative, present/absent, low/high, etc.).","observation"
|
||||
"qualifier_concept_id","No","INTEGER","A foreign key to a Standard Concept ID for a qualifier (e.g., severity of drug-drug interaction alert)","observation"
|
||||
"unit_concept_id","No","INTEGER","A foreign key to a Standard Concept ID of measurement units in the Standardized Vocabularies.","observation"
|
||||
"provider_id","No","INTEGER","A foreign key to the provider in the PROVIDER table who was responsible for making the observation.","observation"
|
||||
"visit_occurrence_id","No","INTEGER","A foreign key to the visit in the VISIT_OCCURRENCE table during which the observation was recorded.","observation"
|
||||
"visit_detail_id","No","INTEGER","A foreign key to the visit in the VISIT_DETAIL table during which the observation was recorded.","observation"
|
||||
"observation_source_value","No","VARCHAR(50)","The observation code as it appears in the source data. This code is mapped to a Standard Concept in the Standardized Vocabularies and the original code is, stored here for reference.","observation"
|
||||
"observation_source_concept_id","No","INTEGER","A foreign key to a Concept that refers to the code used in the source.","observation"
|
||||
"unit_source_value","No","VARCHAR(50)","The source code for the unit as it appears in the source data. This code is mapped to a standard unit concept in the Standardized Vocabularies and the original code is, stored here for reference.","observation"
|
||||
"qualifier_source_value","No","VARCHAR(50)","The source value associated with a qualifier to characterize the observation","observation"
|
||||
"observation_period_id","Yes","INTEGER","A unique identifier for each observation period.","observation_period"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the person for whom the observation period is defined. The demographic details of that person are stored in the person table.","observation_period"
|
||||
"observation_period_start_date","Yes","DATE","The start date of the observation period for which data are available from the data source.","observation_period"
|
||||
"observation_period_end_date","Yes","DATE","The end date of the observation period for which data are available from the data source.","observation_period"
|
||||
"period_type_concept_id","Yes","INTEGER","A foreign key identifier to the predefined concept in the Standardized Vocabularies reflecting the source of the observation period information","observation_period"
|
||||
"person_id","Yes","INTEGER","A unique identifier for each person.","person"
|
||||
"gender_concept_id","Yes","INTEGER","A foreign key that refers to an identifier in the CONCEPT table for the unique gender of the person.","person"
|
||||
"year_of_birth","Yes","INTEGER","The year of birth of the person. For data sources with date of birth, the year is extracted. For data sources where the year of birth is not available, the approximate year of birth is derived based on any age group categorization available.","person"
|
||||
"month_of_birth","No","INTEGER","The month of birth of the person. For data sources that provide the precise date of birth, the month is extracted and stored in this field.","person"
|
||||
"day_of_birth","No","INTEGER","The day of the month of birth of the person. For data sources that provide the precise date of birth, the day is extracted and stored in this field.","person"
|
||||
"birth_datetime","No","DATETIME","The date and time of birth of the person.","person"
|
||||
"race_concept_id","Yes","INTEGER","A foreign key that refers to an identifier in the CONCEPT table for the unique race of the person.","person"
|
||||
"ethnicity_concept_id","Yes","INTEGER","A foreign key that refers to the standard concept identifier in the Standardized Vocabularies for the ethnicity of the person.","person"
|
||||
"location_id","No","INTEGER","A foreign key to the place of residency for the person in the location table, where the detailed address information is stored.","person"
|
||||
"provider_id","No","INTEGER","A foreign key to the primary care provider the person is seeing in the provider table.","person"
|
||||
"care_site_id","No","INTEGER","A foreign key to the site of primary care in the care_site table, where the details of the care site are stored.","person"
|
||||
"person_source_value","No","VARCHAR(50)","An (encrypted) key derived from the person identifier in the source data. This is necessary when a use case requires a link back to the person data at the source dataset.","person"
|
||||
"gender_source_value","No","VARCHAR(50)","The source code for the gender of the person as it appears in the source data. The person’s gender is mapped to a standard gender concept in the Standardized Vocabularies; the original value is stored here for reference.","person"
|
||||
"gender_source_concept_id","No","INTEGER","A foreign key to the gender concept that refers to the code used in the source.","person"
|
||||
"race_source_value","No","VARCHAR(50)","The source code for the race of the person as it appears in the source data. The person race is mapped to a standard race concept in the Standardized Vocabularies and the original value is stored here for reference.","person"
|
||||
"race_source_concept_id","No","INTEGER","A foreign key to the race concept that refers to the code used in the source.","person"
|
||||
"ethnicity_source_value","No","VARCHAR(50)","The source code for the ethnicity of the person as it appears in the source data. The person ethnicity is mapped to a standard ethnicity concept in the Standardized Vocabularies and the original code is, stored here for reference.","person"
|
||||
"ethnicity_source_concept_id","No","INTEGER","A foreign key to the ethnicity concept that refers to the code used in the source.","person"
|
||||
"procedure_occurrence_id","Yes","INTEGER","A system-generated unique identifier for each Procedure Occurrence.","procedure_occurrence"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the Person who is subjected to the Procedure. The demographic details of that Person are stored in the PERSON table.","procedure_occurrence"
|
||||
"procedure_concept_id","Yes","INTEGER","A foreign key that refers to a standard procedure Concept identifier in the Standardized Vocabularies.","procedure_occurrence"
|
||||
"procedure_date","Yes","DATE","The date on which the Procedure was performed.","procedure_occurrence"
|
||||
"procedure_datetime","No","DATETIME","The date and time on which the Procedure was performed.","procedure_occurrence"
|
||||
"procedure_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the type of source data from which the procedure record is derived.","procedure_occurrence"
|
||||
"modifier_concept_id","No","INTEGER","A foreign key to a Standard Concept identifier for a modifier to the Procedure (e.g. bilateral)","procedure_occurrence"
|
||||
"quantity","No","INTEGER","The quantity of procedures ordered or administered.","procedure_occurrence"
|
||||
"provider_id","No","INTEGER","A foreign key to the provider in the PROVIDER table who was responsible for carrying out the procedure.","procedure_occurrence"
|
||||
"visit_occurrence_id","No","INTEGER","A foreign key to the Visit in the VISIT_OCCURRENCE table during which the Procedure was carried out.","procedure_occurrence"
|
||||
"visit_detail_id","No","INTEGER","A foreign key to the Visit Detail in the VISIT_DETAIL table during which the Procedure was carried out.","procedure_occurrence"
|
||||
"procedure_source_value","No","VARCHAR(50)","The source code for the Procedure as it appears in the source data. This code is mapped to a standard procedure Concept in the Standardized Vocabularies and the original code is, stored here for reference. Procedure source codes are typically ICD-9-Proc, CPT-4, HCPCS or OPCS-4 codes.","procedure_occurrence"
|
||||
"procedure_source_concept_id","No","INTEGER","A foreign key to a Procedure Concept that refers to the code used in the source.","procedure_occurrence"
|
||||
"modifier_source_value","No","VARCHAR(50)","The source code for the qualifier as it appears in the source data.","procedure_occurrence"
|
||||
"specimen_id","Yes","INTEGER","A unique identifier for each specimen.","specimen"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the Person for whom the Specimen is recorded.","specimen"
|
||||
"specimen_concept_id","Yes","INTEGER","A foreign key referring to a Standard Concept identifier in the Standardized Vocabularies for the Specimen.","specimen"
|
||||
"specimen_type_concept_id","Yes","INTEGER","A foreign key referring to the Concept identifier in the Standardized Vocabularies reflecting the system of record from which the Specimen was represented in the source data.","specimen"
|
||||
"specimen_date","Yes","DATE","The date the specimen was obtained from the Person.","specimen"
|
||||
"specimen_datetime","No","DATETIME","The date and time on the date when the Specimen was obtained from the person.","specimen"
|
||||
"quantity","No","FLOAT","The amount of specimen collection from the person during the sampling procedure.","specimen"
|
||||
"unit_concept_id","No","INTEGER","A foreign key to a Standard Concept identifier for the Unit associated with the numeric quantity of the Specimen collection.","specimen"
|
||||
"anatomic_site_concept_id","No","INTEGER","A foreign key to a Standard Concept identifier for the anatomic location of specimen collection.","specimen"
|
||||
"disease_status_concept_id","No","INTEGER","A foreign key to a Standard Concept identifier for the Disease Status of specimen collection.","specimen"
|
||||
"specimen_source_id","No","VARCHAR(50)","The Specimen identifier as it appears in the source data.","specimen"
|
||||
"specimen_source_value","No","VARCHAR(50)","The Specimen value as it appears in the source data. This value is mapped to a Standard Concept in the Standardized Vocabularies and the original code is, stored here for reference.","specimen"
|
||||
"unit_source_value","No","VARCHAR(50)","The information about the Unit as detailed in the source.","specimen"
|
||||
"anatomic_site_source_value","No","VARCHAR(50)","The information about the anatomic site as detailed in the source.","specimen"
|
||||
"disease_status_source_value","No","VARCHAR(50)","The information about the disease status as detailed in the source.","specimen"
|
||||
"visit_detail_id","Yes","INTEGER","A unique identifier for each Person's visit or encounter at a healthcare provider.","visit_detail"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the Person for whom the visit is recorded. The demographic details of that Person are stored in the PERSON table.","visit_detail"
|
||||
"visit_concept_id","Yes","INTEGER","A foreign key that refers to a visit Concept identifier in the Standardized Vocabularies.","visit_detail"
|
||||
"visit_start_date","Yes","DATE","The start date of the visit.","visit_detail"
|
||||
"visit_start_datetime","No","DATETIME","The date and time of the visit started.","visit_detail"
|
||||
"visit_end_date","Yes","DATE","The end date of the visit. If this is a one-day visit the end date should match the start date.","visit_detail"
|
||||
"visit_end_datetime","No","DATETIME","The date and time of the visit end.","visit_detail"
|
||||
"visit_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the type of source data from which the visit record is derived.","visit_detail"
|
||||
"provider_id","No","INTEGER","A foreign key to the provider in the provider table who was associated with the visit.","visit_detail"
|
||||
"care_site_id","No","INTEGER","A foreign key to the care site in the care site table that was visited.","visit_detail"
|
||||
"visit_source_value","No","STRING(50)","The source code for the visit as it appears in the source data.","visit_detail"
|
||||
"visit_source_concept_id","No","INTEGER","A foreign key to a Concept that refers to the code used in the source.","visit_detail"
|
||||
"admitting_source_value","Varchar(50)","NO","The source code for the admitting source as it appears in the source data.","visit_detail"
|
||||
"admitting_source_concept_id","Integer","NO","A foreign key to the predefined concept in the Place of Service Vocabulary reflecting the admitting source for a visit.","visit_detail"
|
||||
"discharge_to_source_value","Varchar(50)","NO","The source code for the discharge disposition as it appears in the source data.","visit_detail"
|
||||
"discharge_to_concept_id","Integer","NO","A foreign key to the predefined concept in the Place of Service Vocabulary reflecting the discharge disposition for a visit.","visit_detail"
|
||||
"preceding_visit_detail_id","Integer","NO","A foreign key to the VISIT_DETAIL table of the visit immediately preceding this visit","visit_detail"
|
||||
"visit_detail_parent_id","Integer","NO","A foreign key to the VISIT_DETAIL table record to represent the immediate parent visit-detail record.","visit_detail"
|
||||
"visit_occurrence_id","Integer","YES","A foreign key that refers to the record in the VISIT_OCCURRENCE table. This is a required field, because for every visit_detail is a child of visit_occurrence and cannot exist without a corresponding parent record in visit_occurrence.","visit_detail"
|
||||
"visit_occurrence_id","Yes","INTEGER","A unique identifier for each Person's visit or encounter at a healthcare provider.","visit_occurrence"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the Person for whom the visit is recorded. The demographic details of that Person are stored in the PERSON table.","visit_occurrence"
|
||||
"visit_concept_id","Yes","INTEGER","A foreign key that refers to a visit Concept identifier in the Standardized Vocabularies.","visit_occurrence"
|
||||
"visit_start_date","Yes","DATE","The start date of the visit.","visit_occurrence"
|
||||
"visit_start_datetime","No","DATETIME","The date and time of the visit started.","visit_occurrence"
|
||||
"visit_end_date","Yes","DATE","The end date of the visit. If this is a one-day visit the end date should match the start date.","visit_occurrence"
|
||||
"visit_end_datetime","No","DATETIME","The date and time of the visit end.","visit_occurrence"
|
||||
"visit_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the type of source data from which the visit record is derived.","visit_occurrence"
|
||||
"provider_id","No","INTEGER","A foreign key to the provider in the provider table who was associated with the visit.","visit_occurrence"
|
||||
"care_site_id","No","INTEGER","A foreign key to the care site in the care site table that was visited.","visit_occurrence"
|
||||
"visit_source_value","No","VARCHAR(50)","The source code for the visit as it appears in the source data.","visit_occurrence"
|
||||
"visit_source_concept_id","No","INTEGER","A foreign key to a Concept that refers to the code used in the source.","visit_occurrence"
|
||||
"admitting_source_concept_id","integer","NO","A foreign key to the predefined concept in the Place of Service Vocabulary reflecting the admitting source for a visit.","visit_occurrence"
|
||||
"admitting_source_value","varchar(50)","NO","The source code for the admitting source as it appears in the source data.","visit_occurrence"
|
||||
"discharge_to_concept_id","integer","NO","A foreign key to the predefined concept in the Place of Service Vocabulary reflecting the discharge disposition for a visit.","visit_occurrence"
|
||||
"discharge_to_source_value","varchar(50)","NO","The source code for the discharge disposition as it appears in the source data.","visit_occurrence"
|
||||
"preceding_visit_occurrence_id","integer","NO","A foreign key to the VISIT_OCCURRENCE table of the visit immediately preceding this visit","visit_occurrence"
|
||||
"cohort_definition_id","Yes","INTEGER","A foreign key to a record in the COHORT_DEFINITION table containing relevant Cohort Definition information.","cohort"
|
||||
"subject_id","Yes","INTEGER","A foreign key to the subject in the cohort. These could be referring to records in the PERSON, PROVIDER, VISIT_OCCURRENCE table.","cohort"
|
||||
"cohort_start_date","Yes","DATE","The date when the Cohort Definition criteria for the Person, Provider or Visit first match.","cohort"
|
||||
"cohort_end_date","Yes","DATE","The date when the Cohort Definition criteria for the Person, Provider or Visit no longer match or the Cohort membership was terminated.","cohort"
|
||||
"cohort_definition_id","Yes","INTEGER","A foreign key to a record in the [COHORT_DEFINITION](https://github.com/OHDSI/CommonDataModel/wiki/COHORT_DEFINITION) table containing relevant Cohort Definition information.","cohort_attribute"
|
||||
"subject_id","Yes","INTEGER","A foreign key to the subject in the Cohort. These could be referring to records in the PERSON, PROVIDER, VISIT_OCCURRENCE table.","cohort_attribute"
|
||||
"cohort_start_date","Yes","DATE","The date when the Cohort Definition criteria for the Person, Provider or Visit first match.","cohort_attribute"
|
||||
"cohort_end_date","Yes","DATE","The date when the Cohort Definition criteria for the Person, Provider or Visit no longer match or the Cohort membership was terminated.","cohort_attribute"
|
||||
"attribute_definition_id","Yes","INTEGER","A foreign key to a record in the [ATTRIBUTE_DEFINITION](https://github.com/OHDSI/CommonDataModel/wiki/ATTRIBUTE_DEFINITION) table containing relevant Attribute Definition information.","cohort_attribute"
|
||||
"value_as_number","No","FLOAT","The attribute result stored as a number. This is applicable to attributes where the result is expressed as a numeric value.","cohort_attribute"
|
||||
"value_as_concept_id","No","INTEGER","The attribute result stored as a Concept ID. This is applicable to attributes where the result is expressed as a categorical value.","cohort_attribute"
|
||||
"condition_era_id","Yes","INTEGER","A unique identifier for each Condition Era.","condition_era"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the Person who is experiencing the Condition during the Condition Era. The demographic details of that Person are stored in the PERSON table.","condition_era"
|
||||
"condition_concept_id","Yes","INTEGER","A foreign key that refers to a standard Condition Concept identifier in the Standardized Vocabularies.","condition_era"
|
||||
"condition_era_start_date","Yes","DATE","The start date for the Condition Era constructed from the individual instances of Condition Occurrences. It is the start date of the very first chronologically recorded instance of the condition.","condition_era"
|
||||
"condition_era_end_date","Yes","DATE","The end date for the Condition Era constructed from the individual instances of Condition Occurrences. It is the end date of the final continuously recorded instance of the Condition.","condition_era"
|
||||
"condition_occurrence_count","No","INTEGER","The number of individual Condition Occurrences used to construct the condition era.","condition_era"
|
||||
"dose_era_id","Yes","INTEGER","A unique identifier for each Dose Era.","dose_era"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the Person who is subjected to the drug during the drug era. The demographic details of that Person are stored in the PERSON table.","dose_era"
|
||||
"drug_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Concept identifier in the Standardized Vocabularies for the active Ingredient Concept.","dose_era"
|
||||
"unit_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Concept identifier in the Standardized Vocabularies for the unit concept.","dose_era"
|
||||
"dose_value","Yes","FLOAT","The numeric value of the dose.","dose_era"
|
||||
"dose_era_start_date","Yes","DATE","The start date for the drug era constructed from the individual instances of drug exposures. It is the start date of the very first chronologically recorded instance of utilization of a drug.","dose_era"
|
||||
"dose_era_end_date","Yes","DATE","The end date for the drug era constructed from the individual instance of drug exposures. It is the end date of the final continuously recorded instance of utilization of a drug.","dose_era"
|
||||
"drug_era_id","Yes","INTEGER","A unique identifier for each Drug Era.","drug_era"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the Person who is subjected to the Drug during the fDrug Era. The demographic details of that Person are stored in the PERSON table.","drug_era"
|
||||
"drug_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Concept identifier in the Standardized Vocabularies for the Ingredient Concept.","drug_era"
|
||||
"drug_era_start_date","Yes","DATE","The start date for the Drug Era constructed from the individual instances of Drug Exposures. It is the start date of the very first chronologically recorded instance of conutilization of a Drug.","drug_era"
|
||||
"drug_era_end_date","Yes","DATE","The end date for the drug era constructed from the individual instance of drug exposures. It is the end date of the final continuously recorded instance of utilization of a drug.","drug_era"
|
||||
"drug_exposure_count","No","INTEGER","The number of individual Drug Exposure occurrences used to construct the Drug Era.","drug_era"
|
||||
"gap_days","No","INTEGER","The number of days that are not covered by DRUG_EXPOSURE records that were used to make up the era record.","drug_era"
|
||||
"cost_id","Yes","INTEGER","A unique identifier for each COST record.","cost"
|
||||
"cost_event_id","Yes","INTEGER","A foreign key identifier to the event (e.g. Measurement, Procedure, Visit, Drug Exposure, etc) record for which cost data are recorded.","cost"
|
||||
"cost_domain_id","Yes","VARCHAR(20)","The concept representing the domain of the cost event, from which the corresponding table can be inferred that contains the entity for which cost information is recorded.","cost"
|
||||
"cost_type_concept_id","Yes","INTEGER","A foreign key identifier to a concept in the CONCEPT table for the provenance or the source of the COST data: Calculated from insurance claim information, provider revenue, calculated from cost-to-charge ratio, reported from accounting database, etc.","cost"
|
||||
"currency_concept_id","No","INTEGER","A foreign key identifier to the concept representing the 3-letter code used to delineate international currencies, such as USD for US Dollar.","cost"
|
||||
"total_charge","No","FLOAT","The total amount charged by some provider of goods or services (e.g. hospital, physician pharmacy, dme provider) to payers (insurance companies, the patient).","cost"
|
||||
"total_cost","No","FLOAT","The cost incurred by the provider of goods or services.","cost"
|
||||
"total_paid","No","FLOAT","The total amount actually paid from all payers for goods or services of the provider.","cost"
|
||||
"paid_by_payer","No","FLOAT","The amount paid by the Payer for the goods or services.","cost"
|
||||
"paid_by_patient","No","FLOAT","The total amount paid by the Person as a share of the expenses.","cost"
|
||||
"paid_patient_copay","No","FLOAT","The amount paid by the Person as a fixed contribution to the expenses.","cost"
|
||||
"paid_patient_coinsurance","No","FLOAT","The amount paid by the Person as a joint assumption of risk. Typically, this is a percentage of the expenses defined by the Payer Plan after the Person's deductible is exceeded.","cost"
|
||||
"paid_patient_deductible","No","FLOAT","The amount paid by the Person that is counted toward the deductible defined by the Payer Plan. paid_patient_deductible does contribute to the paid_by_patient variable.","cost"
|
||||
"paid_by_primary","No","FLOAT","The amount paid by a primary Payer through the coordination of benefits.","cost"
|
||||
"paid_ingredient_cost","No","FLOAT","The amount paid by the Payer to a pharmacy for the drug, excluding the amount paid for dispensing the drug. paid_ingredient_cost contributes to the paid_by_payer field if this field is populated with a nonzero value.","cost"
|
||||
"paid_dispensing_fee","No","FLOAT","The amount paid by the Payer to a pharmacy for dispensing a drug, excluding the amount paid for the drug ingredient. paid_dispensing_fee contributes to the paid_by_payer field if this field is populated with a nonzero value.","cost"
|
||||
"payer_plan_period_id","No","INTEGER","A foreign key to the PAYER_PLAN_PERIOD table, where the details of the Payer, Plan and Family are stored. Record the payer_plan_id that relates to the payer who contributed to the paid_by_payer field.","cost"
|
||||
"amount_allowed","No","FLOAT","The contracted amount agreed between the payer and provider.","cost"
|
||||
"revenue_code_concept_id","No","INTEGER","A foreign key referring to a Standard Concept ID in the Standardized Vocabularies for Revenue codes.","cost"
|
||||
"revenue_code_source_value","No","VARCHAR(50)","The source code for the Revenue code as it appears in the source data, stored here for reference.","cost"
|
||||
"drg_concept_id","No","INTEGER","A foreign key to the predefined concept in the DRG Vocabulary reflecting the DRG for a visit.","cost"
|
||||
"drg_source_value","No","VARCHAR(3)","The 3-digit DRG source code as it appears in the source data.","cost"
|
||||
"payer_plan_period_id","Yes","INTEGER","A identifier for each unique combination of payer, plan, family code and time span.","payer_plan_period"
|
||||
"person_id","Yes","INTEGER","A foreign key identifier to the Person covered by the payer. The demographic details of that Person are stored in the PERSON table.","payer_plan_period"
|
||||
"payer_plan_period_start_date","Yes","DATE","The start date of the payer plan period.","payer_plan_period"
|
||||
"payer_plan_period_end_date","Yes","DATE","The end date of the payer plan period.","payer_plan_period"
|
||||
"payer_concept_id","No","INTEGER","A foreign key that refers to a standard Payer concept identifier in the Standarized Vocabularies","payer_plan_period"
|
||||
"payer_source_value","No","VARCHAR(50)","The source code for the payer as it appears in the source data.","payer_plan_period"
|
||||
"payer_source_concept_id","No","INTEGER","A foreign key to a payer concept that refers to the code used in the source.","payer_plan_period"
|
||||
"plan_concept_id","No","INTEGER","A foreign key that refers to a standard plan concept identifier that represents the health benefit plan in the Standardized Vocabularies","payer_plan_period"
|
||||
"plan_source_value","No","VARCHAR(50)","The source code for the Person's health benefit plan as it appears in the source data.","payer_plan_period"
|
||||
"plan_source_concept_id","No","INTEGER","A foreign key to a plan concept that refers to the plan code used in the source data.","payer_plan_period"
|
||||
"sponsor_concept_id","No","INTEGER","A foreign key that refers to a concept identifier that represents the sponsor in the Standardized Vocabularies.","payer_plan_period"
|
||||
"sponsor_source_value","No","VARCHAR(50)","The source code for the Person's sponsor of the health plan as it appears in the source data.","payer_plan_period"
|
||||
"sponsor_source_concept_id","No","INTEGER","A foreign key to a sponsor concept that refers to the sponsor code used in the source data.","payer_plan_period"
|
||||
"family_source_value","No","VARCHAR(50)","The source code for the Person's family as it appears in the source data.","payer_plan_period"
|
||||
"stop_reason_concept_id","No","INTEGER","A foreign key that refers to a standard termination reason that represents the reason for the termination in the Standardized Vocabularies.","payer_plan_period"
|
||||
"stop_reason_source_value","No","VARCHAR(50)","The reason for stop-coverage as it appears in the source data.","payer_plan_period"
|
||||
"stop_reason_source_concept_id","No","INTEGER","A foreign key to a stop-coverage concept that refers to the code used in the source.","payer_plan_period"
|
||||
"care_site_id","Yes","INTEGER","A unique identifier for each Care Site.","care_site"
|
||||
"care_site_name","No","VARCHAR(255)","The verbatim description or name of the Care Site as in data source","care_site"
|
||||
"place_of_service_concept_id","No","INTEGER","A foreign key that refers to a Place of Service Concept ID in the Standardized Vocabularies.","care_site"
|
||||
"location_id","No","INTEGER","A foreign key to the geographic Location in the LOCATION table, where the detailed address information is stored.","care_site"
|
||||
"care_site_source_value","No","VARCHAR(50)","The identifier for the Care Site in the source data, stored here for reference.","care_site"
|
||||
"place_of_service_source_value","No","VARCHAR(50)","The source code for the Place of Service as it appears in the source data, stored here for reference.","care_site"
|
||||
"location_id","Yes","INTEGER","A unique identifier for each geographic location.","location"
|
||||
"address_1","No","VARCHAR(50)","The address field 1, typically used for the street address, as it appears in the source data.","location"
|
||||
"address_2","No","VARCHAR(50)","The address field 2, typically used for additional detail such as buildings, suites, floors, as it appears in the source data.","location"
|
||||
"city","No","VARCHAR(50)","The city field as it appears in the source data.","location"
|
||||
"state","No","VARCHAR(2)","The state field as it appears in the source data.","location"
|
||||
"zip","No","VARCHAR(9)","The zip or postal code.","location"
|
||||
"county","No","VARCHAR(20)","The county.","location"
|
||||
"location_source_value","No","VARCHAR(50)","The verbatim information that is used to uniquely identify the location as it appears in the source data.","location"
|
||||
"provider_id","Yes","INTEGER","A unique identifier for each Provider.","provider"
|
||||
"provider_name","No","VARCHAR(255)","A description of the Provider.","provider"
|
||||
"npi","No","VARCHAR(20)","The National Provider Identifier (NPI) of the provider.","provider"
|
||||
"dea","No","VARCHAR(20)","The Drug Enforcement Administration (DEA) number of the provider.","provider"
|
||||
"specialty_concept_id","No","INTEGER","A foreign key to a Standard Specialty Concept ID in the Standardized Vocabularies.","provider"
|
||||
"care_site_id","No","INTEGER","A foreign key to the main Care Site where the provider is practicing.","provider"
|
||||
"year_of_birth","No","INTEGER","The year of birth of the Provider.","provider"
|
||||
"gender_concept_id","No","INTEGER","The gender of the Provider.","provider"
|
||||
"provider_source_value","No","VARCHAR(50)","The identifier used for the Provider in the source data, stored here for reference.","provider"
|
||||
"specialty_source_value","No","VARCHAR(50)","The source code for the Provider specialty as it appears in the source data, stored here for reference.","provider"
|
||||
"specialty_source_concept_id","No","INTEGER","A foreign key to a Concept that refers to the code used in the source.","provider"
|
||||
"gender_source_value","No","VARCHAR(50)","The gender code for the Provider as it appears in the source data, stored here for reference.","provider"
|
||||
"gender_source_concept_id","No","INTEGER","A foreign key to a Concept that refers to the code used in the source.","provider"
|
||||
"cdm_source_name","Yes","VARCHAR(255)","The full name of the source","cdm_source"
|
||||
"cdm_source_abbreviation","No","VARCHAR(25)","An abbreviation of the name","cdm_source"
|
||||
"cdm_holder","No","VARCHAR(255)","The name of the organization responsible for the development of the CDM instance","cdm_source"
|
||||
"source_description","No","CLOB","A description of the source data origin and purpose for collection. The description may contain a summary of the period of time that is expected to be covered by this dataset.","cdm_source"
|
||||
"source_documentation_reference","No","VARCHAR(255)","URL or other external reference to location of source documentation","cdm_source"
|
||||
"cdm_etl _reference","No","VARCHAR(255)","URL or other external reference to location of ETL specification documentation and ETL source code","cdm_source"
|
||||
"source_release_date","No","DATE","The date for which the source data are most current, such as the last day of data capture","cdm_source"
|
||||
"cdm_release_date","No","DATE","The date when the CDM was instantiated","cdm_source"
|
||||
"cdm_version","No","VARCHAR(10)","The version of CDM used","cdm_source"
|
||||
"vocabulary_version","No","VARCHAR(20)","The version of the vocabulary used","cdm_source"
|
||||
"metadata_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Metadata Concept identifier in the Standardized Vocabularies.","metadata"
|
||||
"metadata_type_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Type Concept identifier in the Standardized Vocabularies.","metadata"
|
||||
"name","Yes","VARCHAR(250)","The name of the Concept stored in metadata_concept_id or a description of the data being stored.","metadata"
|
||||
"value_as_string","No","NVARCHAR","The metadata value stored as a string.","metadata"
|
||||
"value_as_concept_id","No","INTEGER","A foreign key to a metadata value stored as a Concept ID.","metadata"
|
||||
"metadata date","No","DATE","The date associated with the metadata","metadata"
|
||||
"metadata_datetime","No","DATETIME","The date and time associated with the metadata","metadata"
|
||||
"attribute_definition_id","Yes","INTEGER","A unique identifier for each Attribute.","attribute_definition"
|
||||
"attribute_name","Yes","VARCHAR(255)","A short description of the Attribute.","attribute_definition"
|
||||
"attribute_description","No","VARCHAR(MAX)","A complete description of the Attribute definition","attribute_definition"
|
||||
"attribute_type_concept_id","Yes","INTEGER","Type defining what kind of Attribute Definition the record represents and how the syntax may be executed","attribute_definition"
|
||||
"attribute_syntax","No","VARCHAR(MAX)","Syntax or code to operationalize the Attribute definition","attribute_definition"
|
||||
"cohort_definition_id","Yes","INTEGER","A unique identifier for each Cohort.","cohort_definition"
|
||||
"cohort_definition_name","Yes","VARCHAR(255)","A short description of the Cohort.","cohort_definition"
|
||||
"cohort_definition_description","No","VARCHAR(MAX)","A complete description of the Cohort definition","cohort_definition"
|
||||
"definition_type_concept_id","Yes","INTEGER","Type defining what kind of Cohort Definition the record represents and how the syntax may be executed","cohort_definition"
|
||||
"cohort_definition_syntax","No","VARCHAR(MAX)","Syntax or code to operationalize the Cohort definition","cohort_definition"
|
||||
"subject_concept_id","Yes","INTEGER","A foreign key to the Concept to which defines the domain of subjects that are members of the cohort (e.g., Person, Provider, Visit).","cohort_definition"
|
||||
"cohort_instantiation_date","No","DATE","A date to indicate when the Cohort was instantiated in the COHORT table","cohort_definition"
|
||||
"concept_id","Yes","INTEGER","A unique identifier for each Concept across all domains.","concept"
|
||||
"concept_name","Yes","VARCHAR(255)","An unambiguous, meaningful and descriptive name for the Concept.","concept"
|
||||
"domain_id","Yes","VARCHAR(20)","A foreign key to the [DOMAIN](https://github.com/OHDSI/CommonDataModel/wiki/DOMAIN) table the Concept belongs to.","concept"
|
||||
"vocabulary_id","Yes","VARCHAR(20)","A foreign key to the [VOCABULARY](https://github.com/OHDSI/CommonDataModel/wiki/VOCABULARY) table indicating from which source the Concept has been adapted.","concept"
|
||||
"concept_class_id","Yes","VARCHAR(20)","The attribute or concept class of the Concept. Examples are 'Clinical Drug', 'Ingredient', 'Clinical Finding' etc.","concept"
|
||||
"standard_concept","No","VARCHAR(1)","This flag determines where a Concept is a Standard Concept, i.e. is used in the data, a Classification Concept, or a non-standard Source Concept. The allowables values are 'S' (Standard Concept) and 'C' (Classification Concept), otherwise the content is NULL.","concept"
|
||||
"concept_code","Yes","VARCHAR(50)","The concept code represents the identifier of the Concept in the source vocabulary, such as SNOMED-CT concept IDs, RxNorm RXCUIs etc. Note that concept codes are not unique across vocabularies.","concept"
|
||||
"valid_start_date","Yes","DATE","The date when the Concept was first recorded. The default value is 1-Jan-1970, meaning, the Concept has no (known) date of inception.","concept"
|
||||
"valid_end_date","Yes","DATE","The date when the Concept became invalid because it was deleted or superseded (updated) by a new concept. The default value is 31-Dec-2099, meaning, the Concept is valid until it becomes deprecated.","concept"
|
||||
"invalid_reason","No","VARCHAR(1)","Reason the Concept was invalidated. Possible values are D (deleted), U (replaced with an update) or NULL when valid_end_date has the default value.","concept"
|
||||
"ancestor_concept_id","Yes","INTEGER","A foreign key to the concept in the concept table for the higher-level concept that forms the ancestor in the relationship.","concept_ancestor"
|
||||
"descendant_concept_id","Yes","INTEGER","A foreign key to the concept in the concept table for the lower-level concept that forms the descendant in the relationship.","concept_ancestor"
|
||||
"min_levels_of_separation","Yes","INTEGER","The minimum separation in number of levels of hierarchy between ancestor and descendant concepts. This is an attribute that is used to simplify hierarchic analysis.","concept_ancestor"
|
||||
"max_levels_of_separation","Yes","INTEGER","The maximum separation in number of levels of hierarchy between ancestor and descendant concepts. This is an attribute that is used to simplify hierarchic analysis.","concept_ancestor"
|
||||
"concept_class_id","Yes","VARCHAR(20)","A unique key for each class.","concept_class"
|
||||
"concept_class_name","Yes","VARCHAR(255)","The name describing the Concept Class, e.g. ""Clinical Finding"", ""Ingredient"", etc.","concept_class"
|
||||
"concept_class_concept_id","Yes","INTEGER","A foreign key that refers to an identifier in the [CONCEPT](https://github.com/OHDSI/CommonDataModel/wiki/CONCEPT) table for the unique Concept Class the record belongs to.","concept_class"
|
||||
"concept_id_1","Yes","INTEGER","A foreign key to a Concept in the [CONCEPT](https://github.com/OHDSI/CommonDataModel/wiki/CONCEPT) table associated with the relationship. Relationships are directional, and this field represents the source concept designation.","concept_relationship"
|
||||
"concept_id_2","Yes","INTEGER","A foreign key to a Concept in the [CONCEPT](https://github.com/OHDSI/CommonDataModel/wiki/CONCEPT) table associated with the relationship. Relationships are directional, and this field represents the destination concept designation.","concept_relationship"
|
||||
"relationship_id","Yes","VARCHAR(20)","A unique identifier to the type or nature of the Relationship as defined in the [RELATIONSHIP](https://github.com/OHDSI/CommonDataModel/wiki/RELATIONSHIP) table.","concept_relationship"
|
||||
"valid_start_date","Yes","DATE","The date when the instance of the Concept Relationship is first recorded.","concept_relationship"
|
||||
"valid_end_date","Yes","DATE","The date when the Concept Relationship became invalid because it was deleted or superseded (updated) by a new relationship. Default value is 31-Dec-2099.","concept_relationship"
|
||||
"invalid_reason","No","VARCHAR(1)","Reason the relationship was invalidated. Possible values are 'D' (deleted), 'U' (replaced with an update) or NULL when valid_end_date has the default value.","concept_relationship"
|
||||
"concept_id","Yes","INTEGER","A foreign key to the Concept in the CONCEPT table.","concept_synonym"
|
||||
"concept_synonym_name","Yes","VARCHAR(1000)","The alternative name for the Concept.","concept_synonym"
|
||||
"language_concept_id","Yes","INTEGER","A foreign key to a Concept representing the language.","concept_synonym"
|
||||
"domain_id","Yes","VARCHAR(20)","A unique key for each domain.","domain"
|
||||
"domain_name","Yes","VARCHAR(255)","The name describing the Domain, e.g. ""Condition"", ""Procedure"", ""Measurement"" etc.","domain"
|
||||
"domain_concept_id","Yes","INTEGER","A foreign key that refers to an identifier in the [CONCEPT](https://github.com/OHDSI/CommonDataModel/wiki/CONCEPT) table for the unique Domain Concept the Domain record belongs to.","domain"
|
||||
"drug_concept_id","Yes","INTEGER","A foreign key to the Concept in the CONCEPT table representing the identifier for Branded Drug or Clinical Drug Concept.","drug_strength"
|
||||
"ingredient_concept_id","Yes","INTEGER","A foreign key to the Concept in the CONCEPT table, representing the identifier for drug Ingredient Concept contained within the drug product.","drug_strength"
|
||||
"amount_value","No","FLOAT","The numeric value associated with the amount of active ingredient contained within the product.","drug_strength"
|
||||
"amount_unit_concept_id","No","INTEGER","A foreign key to the Concept in the CONCEPT table representing the identifier for the Unit for the absolute amount of active ingredient.","drug_strength"
|
||||
"numerator_value","No","FLOAT","The numeric value associated with the concentration of the active ingredient contained in the product","drug_strength"
|
||||
"numerator_unit_concept_id","No","INTEGER","A foreign key to the Concept in the CONCEPT table representing the identifier for the numerator Unit for the concentration of active ingredient.","drug_strength"
|
||||
"denominator_value","No","FLOAT","The amount of total liquid (or other divisible product, such as ointment, gel, spray, etc.).","drug_strength"
|
||||
"denominator_unit_concept_id","No","INTEGER","A foreign key to the Concept in the CONCEPT table representing the identifier for the denominator Unit for the concentration of active ingredient.","drug_strength"
|
||||
"box_size","No","INTEGER","The number of units of Clinical of Branded Drug, or Quantified Clinical or Branded Drug contained in a box as dispensed to the patient","drug_strength"
|
||||
"valid_start_date","Yes","DATE","The date when the Concept was first recorded. The default value is 1-Jan-1970.","drug_strength"
|
||||
"valid_end_date","Yes","DATE","The date when the concept became invalid because it was deleted or superseded (updated) by a new Concept. The default value is 31-Dec-2099.","drug_strength"
|
||||
"invalid_reason","No","VARCHAR(1)","Reason the concept was invalidated. Possible values are 'D' (deleted), 'U' (replaced with an update) or NULL when valid_end_date has the default value.","drug_strength"
|
||||
"relationship_id","Yes","VARCHAR(20)","The type of relationship captured by the relationship record.","relationship"
|
||||
"relationship_name","Yes","VARCHAR(255)","The text that describes the relationship type.","relationship"
|
||||
"is_hierarchical","Yes","VARCHAR(1)","Defines whether a relationship defines concepts into classes or hierarchies. Values are 1 for hierarchical relationship or 0 if not.","relationship"
|
||||
"defines_ancestry","Yes","VARCHAR(1)","Defines whether a hierarchical relationship contributes to the concept_ancestor table. These are subsets of the hierarchical relationships. Valid values are 1 or 0.","relationship"
|
||||
"reverse_relationship_id","Yes","VARCHAR(20)","The identifier for the relationship used to define the reverse relationship between two concepts.","relationship"
|
||||
"relationship_concept_id","Yes","INTEGER","A foreign key that refers to an identifier in the CONCEPT table for the unique relationship concept.","relationship"
|
||||
"source_code","Yes","VARCHAR(50)","The source code being translated into a Standard Concept.","source_to_concept_map"
|
||||
"source_concept_id","Yes","INTEGER","A foreign key to the Source Concept that is being translated into a Standard Concept.","source_to_concept_map"
|
||||
"source_vocabulary_id","Yes","VARCHAR(20)","A foreign key to the VOCABULARY table defining the vocabulary of the source code that is being translated to a Standard Concept.","source_to_concept_map"
|
||||
"source_code_description","No","VARCHAR(255)","An optional description for the source code. This is included as a convenience to compare the description of the source code to the name of the concept.","source_to_concept_map"
|
||||
"target_concept_id","Yes","INTEGER","A foreign key to the target Concept to which the source code is being mapped.","source_to_concept_map"
|
||||
"target_vocabulary_id","Yes","VARCHAR(20)","A foreign key to the VOCABULARY table defining the vocabulary of the target Concept.","source_to_concept_map"
|
||||
"valid_start_date","Yes","DATE","The date when the mapping instance was first recorded.","source_to_concept_map"
|
||||
"valid_end_date","Yes","DATE","The date when the mapping instance became invalid because it was deleted or superseded (updated) by a new relationship. Default value is 31-Dec-2099.","source_to_concept_map"
|
||||
"invalid_reason","No","VARCHAR(1)","Reason the mapping instance was invalidated. Possible values are D (deleted), U (replaced with an update) or NULL when valid_end_date has the default value.","source_to_concept_map"
|
||||
"vocabulary_id","Yes","VARCHAR(20)","A unique identifier for each Vocabulary, such as ICD9CM, SNOMED, Visit.","vocabulary"
|
||||
"vocabulary_name","Yes","VARCHAR(255)","The name describing the vocabulary, for example ""International Classification of Diseases, Ninth Revision, Clinical Modification, Volume 1 and 2 (NCHS)"" etc.","vocabulary"
|
||||
"vocabulary_reference","Yes","VARCHAR(255)","External reference to documentation or available download of the about the vocabulary.","vocabulary"
|
||||
"vocabulary_version","Yes","VARCHAR(255)","Version of the Vocabulary as indicated in the source.","vocabulary"
|
||||
"vocabulary_concept_id","Yes","INTEGER","A foreign key that refers to a standard concept identifier in the CONCEPT table for the Vocabulary the VOCABULARY record belongs to.","vocabulary"
|
||||
|
|
|
@ -0,0 +1,408 @@
|
|||
"","field","required","type","description","table","schema"
|
||||
"1","condition_occurrence_id","Yes","INTEGER","A unique identifier for each Condition Occurrence event.","condition_occurrence","cdm"
|
||||
"2","person_id","Yes","INTEGER","A foreign key identifier to the Person who is experiencing the condition. The demographic details of that Person are stored in the PERSON table.","condition_occurrence","cdm"
|
||||
"3","condition_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Condition Concept identifier in the Standardized Vocabularies.","condition_occurrence","cdm"
|
||||
"4","condition_start_date","Yes","DATE","The date when the instance of the Condition is recorded.","condition_occurrence","cdm"
|
||||
"5","condition_start_datetime","No","DATETIME","The date and time when the instance of the Condition is recorded.","condition_occurrence","cdm"
|
||||
"6","condition_end_date","No","DATE","The date when the instance of the Condition is considered to have ended.","condition_occurrence","cdm"
|
||||
"7","condition_end_datetime","No","DATE","The date when the instance of the Condition is considered to have ended.","condition_occurrence","cdm"
|
||||
"8","condition_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the source data from which the condition was recorded, the level of standardization, and the type of occurrence.","condition_occurrence","cdm"
|
||||
"9","stop_reason","No","VARCHAR(20)","The reason that the condition was no longer present, as indicated in the source data.","condition_occurrence","cdm"
|
||||
"10","provider_id","No","INTEGER","A foreign key to the Provider in the PROVIDER table who was responsible for capturing (diagnosing) the Condition.","condition_occurrence","cdm"
|
||||
"11","visit_occurrence_id","No","INTEGER","A foreign key to the visit in the VISIT_OCCURRENCE table during which the Condition was determined (diagnosed).","condition_occurrence","cdm"
|
||||
"12","visit_detail_id","No","INTEGER","A foreign key to the visit in the VISIT_DETAIL table during which the Condition was determined (diagnosed).","condition_occurrence","cdm"
|
||||
"13","condition_source_value","No","VARCHAR(50)","The source code for the condition as it appears in the source data. This code is mapped to a standard condition concept in the Standardized Vocabularies and the original code is stored here for reference.","condition_occurrence","cdm"
|
||||
"14","condition_source_concept_id","No","INTEGER","A foreign key to a Condition Concept that refers to the code used in the source.","condition_occurrence","cdm"
|
||||
"15","condition_status_source_value","No","VARCHAR(50)","The source code for the condition status as it appears in the source data.","condition_occurrence","cdm"
|
||||
"16","condition_status_concept_id","No","INTEGER","A foreign key to the predefined Concept in the Standard Vocabulary reflecting the condition status","condition_occurrence","cdm"
|
||||
"17","person_id","Yes","INTEGER","A foreign key identifier to the deceased person. The demographic details of that person are stored in the person table.","death","cdm"
|
||||
"18","death_date","Yes","DATE","The date the person was deceased. If the precise date including day or month is not known or not allowed, December is used as the default month, and the last day of the month the default day.","death","cdm"
|
||||
"19","death_datetime","No","DATETIME","The date and time the person was deceased. If the precise date including day or month is not known or not allowed, December is used as the default month, and the last day of the month the default day.","death","cdm"
|
||||
"20","death_type_concept_id","Yes","INTEGER","A foreign key referring to the predefined concept identifier in the Standardized Vocabularies reflecting how the death was represented in the source data.","death","cdm"
|
||||
"21","cause_concept_id","No","INTEGER","A foreign key referring to a standard concept identifier in the Standardized Vocabularies for conditions.","death","cdm"
|
||||
"22","cause_source_value","No","VARCHAR(50)","The source code for the cause of death as it appears in the source data. This code is mapped to a standard concept in the Standardized Vocabularies and the original code is, stored here for reference.","death","cdm"
|
||||
"23","cause_source_concept_id","No","INTEGER","A foreign key to the concept that refers to the code used in the source. Note, this variable name is abbreviated to ensure it will be allowable across database platforms.","death","cdm"
|
||||
"24","device_exposure_id","Yes","INTEGER","A system-generated unique identifier for each Device Exposure.","device_exposure","cdm"
|
||||
"25","person_id","Yes","INTEGER","A foreign key identifier to the Person who is subjected to the Device. The demographic details of that person are stored in the Person table.","device_exposure","cdm"
|
||||
"26","device_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Concept identifier in the Standardized Vocabularies for the Device concept.","device_exposure","cdm"
|
||||
"27","device_exposure_start_date","Yes","DATE","The date the Device or supply was applied or used.","device_exposure","cdm"
|
||||
"28","device_exposure_start_datetime","No","DATETIME","The date and time the Device or supply was applied or used.","device_exposure","cdm"
|
||||
"29","device_exposure_end_date","No","DATE","The date the Device or supply was removed from use.","device_exposure","cdm"
|
||||
"30","device_exposure_end_datetime","No","DATETIME","The date and time the Device or supply was removed from use.","device_exposure","cdm"
|
||||
"31","device_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the type of Device Exposure recorded. It indicates how the Device Exposure was represented in the source data.","device_exposure","cdm"
|
||||
"32","unique_device_id","No","VARCHAR(50)","A UDI or equivalent identifying the instance of the Device used in the Person.","device_exposure","cdm"
|
||||
"33","quantity","No","INTEGER","The number of individual Devices used for the exposure.","device_exposure","cdm"
|
||||
"34","provider_id","No","INTEGER","A foreign key to the provider in the PROVIDER table who initiated of administered the Device.","device_exposure","cdm"
|
||||
"35","visit_occurrence_id","No","INTEGER","A foreign key to the visit in the VISIT_OCCURRENCE table during which the device was used.","device_exposure","cdm"
|
||||
"36","visit_detail_id","No","INTEGER","A foreign key to the visit detail in the VISIT_DETAIL table during which the Drug Exposure was initiated.","device_exposure","cdm"
|
||||
"37","device_source_value","No","VARCHAR(50)","The source code for the Device as it appears in the source data. This code is mapped to a standard Device Concept in the Standardized Vocabularies and the original code is stored here for reference.","device_exposure","cdm"
|
||||
"38","device_source_concept_id","No","INTEGER","A foreign key to a Device Concept that refers to the code used in the source.","device_exposure","cdm"
|
||||
"39","drug_exposure_id","Yes","INTEGER","A system-generated unique identifier for each Drug utilization event.","drug_exposure","cdm"
|
||||
"40","person_id","Yes","INTEGER","A foreign key identifier to the person who is subjected to the Drug. The demographic details of that person are stored in the person table.","drug_exposure","cdm"
|
||||
"41","drug_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Concept identifier in the Standardized Vocabularies for the Drug concept.","drug_exposure","cdm"
|
||||
"42","drug_exposure_start_date","Yes","DATE","The start date for the current instance of Drug utilization. Valid entries include a start date of a prescription, the date a prescription was filled, or the date on which a Drug administration procedure was recorded.","drug_exposure","cdm"
|
||||
"43","drug_exposure_start_datetime","No","DATETIME","The start date and time for the current instance of Drug utilization. Valid entries include a start date of a prescription, the date a prescription was filled, or the date on which a Drug administration procedure was recorded.","drug_exposure","cdm"
|
||||
"44","drug_exposure_end_date","Yes","DATE","The end date for the current instance of Drug utilization. It is not available from all sources.","drug_exposure","cdm"
|
||||
"45","drug_exposure_end_datetime","No","DATETIME","The end date and time for the current instance of Drug utilization. It is not available from all sources.","drug_exposure","cdm"
|
||||
"46","verbatim_end_date","No","DATE","The known end date of a drug_exposure as provided by the source","drug_exposure","cdm"
|
||||
"47","drug_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the type of Drug Exposure recorded. It indicates how the Drug Exposure was represented in the source data.","drug_exposure","cdm"
|
||||
"48","stop_reason","No","VARCHAR(20)","The reason the Drug was stopped. Reasons include regimen completed, changed, removed, etc.","drug_exposure","cdm"
|
||||
"49","refills","No","INTEGER","The number of refills after the initial prescription. The initial prescription is not counted, values start with 0.","drug_exposure","cdm"
|
||||
"50","quantity","No","FLOAT","The quantity of drug as recorded in the original prescription or dispensing record.","drug_exposure","cdm"
|
||||
"51","days_supply","No","INTEGER","The number of days of supply of the medication as recorded in the original prescription or dispensing record.","drug_exposure","cdm"
|
||||
"52","sig","No","VARCHAR(MAX)","The directions (""signetur"") on the Drug prescription as recorded in the original prescription (and printed on the container) or dispensing record.","drug_exposure","cdm"
|
||||
"53","route_concept_id","No","INTEGER","A foreign key to a predefined concept in the Standardized Vocabularies reflecting the route of administration.","drug_exposure","cdm"
|
||||
"54","lot_number","No","VARCHAR(50)","An identifier assigned to a particular quantity or lot of Drug product from the manufacturer.","drug_exposure","cdm"
|
||||
"55","provider_id","No","INTEGER","A foreign key to the provider in the PROVIDER table who initiated (prescribed or administered) the Drug Exposure.","drug_exposure","cdm"
|
||||
"56","visit_occurrence_id","No","INTEGER","A foreign key to the Visit in the VISIT_OCCURRENCE table during which the Drug Exposure was initiated.","drug_exposure","cdm"
|
||||
"57","visit_detail_id","No","INTEGER","A foreign key to the Visit Detail in the VISIT_DETAIL table during which the Drug Exposure was initiated.","drug_exposure","cdm"
|
||||
"58","drug_source_value","No","VARCHAR(50)","The source code for the Drug as it appears in the source data. This code is mapped to a Standard Drug concept in the Standardized Vocabularies and the original code is, stored here for reference.","drug_exposure","cdm"
|
||||
"59","drug_source_concept_id","No","INTEGER","A foreign key to a Drug Concept that refers to the code used in the source.","drug_exposure","cdm"
|
||||
"60","route_source_value","No","VARCHAR(50)","The information about the route of administration as detailed in the source.","drug_exposure","cdm"
|
||||
"61","dose_unit_source_value","No","VARCHAR(50)","The information about the dose unit as detailed in the source.","drug_exposure","cdm"
|
||||
"62","domain_concept_id_1","Yes","INTEGER","The concept representing the domain of fact one, from which the corresponding table can be inferred.","fact_relationship","cdm"
|
||||
"63","fact_id_1","Yes","INTEGER","The unique identifier in the table corresponding to the domain of fact one.","fact_relationship","cdm"
|
||||
"64","domain_concept_id_2","Yes","INTEGER","The concept representing the domain of fact two, from which the corresponding table can be inferred.","fact_relationship","cdm"
|
||||
"65","fact_id_2","Yes","INTEGER","The unique identifier in the table corresponding to the domain of fact two.","fact_relationship","cdm"
|
||||
"66","relationship_concept_id","Yes","INTEGER","A foreign key to a Standard Concept ID of relationship in the Standardized Vocabularies.","fact_relationship","cdm"
|
||||
"67","measurement_id","Yes","INTEGER","A unique identifier for each Measurement.","measurement","cdm"
|
||||
"68","person_id","Yes","INTEGER","A foreign key identifier to the Person about whom the measurement was recorded. The demographic details of that Person are stored in the PERSON table.","measurement","cdm"
|
||||
"69","measurement_concept_id","Yes","INTEGER","A foreign key to the standard measurement concept identifier in the Standardized Vocabularies.","measurement","cdm"
|
||||
"70","measurement_date","Yes","DATE","The date of the Measurement.","measurement","cdm"
|
||||
"71","measurement_datetime","No","DATETIME","The date and time of the Measurement. Some database systems don't have a datatype of time. To accomodate all temporal analyses, datatype datetime can be used (combining measurement_date and measurement_time [forum discussion](http://forums.ohdsi.org/t/date-time-and-datetime-problem-and-the-world-of-hours-and-1day/314))","measurement","cdm"
|
||||
"72","measurement_time","No","VARCHAR(10)","The time of the Measurement. This is present for backwards compatibility and will deprecated in an upcoming version","measurement","cdm"
|
||||
"73","measurement_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the provenance from where the Measurement record was recorded.","measurement","cdm"
|
||||
"74","operator_concept_id","No","INTEGER","A foreign key identifier to the predefined Concept in the Standardized Vocabularies reflecting the mathematical operator that is applied to the value_as_number. Operators are <, <=, =, >=, >.","measurement","cdm"
|
||||
"75","value_as_number","No","FLOAT","A Measurement result where the result is expressed as a numeric value.","measurement","cdm"
|
||||
"76","value_as_concept_id","No","INTEGER","A foreign key to a Measurement result represented as a Concept from the Standardized Vocabularies (e.g., positive/negative, present/absent, low/high, etc.).","measurement","cdm"
|
||||
"77","unit_concept_id","No","INTEGER","A foreign key to a Standard Concept ID of Measurement Units in the Standardized Vocabularies.","measurement","cdm"
|
||||
"78","range_low","No","FLOAT","The lower limit of the normal range of the Measurement result. The lower range is assumed to be of the same unit of measure as the Measurement value.","measurement","cdm"
|
||||
"79","range_high","No","FLOAT","The upper limit of the normal range of the Measurement. The upper range is assumed to be of the same unit of measure as the Measurement value.","measurement","cdm"
|
||||
"80","provider_id","No","INTEGER","A foreign key to the provider in the PROVIDER table who was responsible for initiating or obtaining the measurement.","measurement","cdm"
|
||||
"81","visit_occurrence_id","No","INTEGER","A foreign key to the Visit in the VISIT_OCCURRENCE table during which the Measurement was recorded.","measurement","cdm"
|
||||
"82","visit_detail_id","No","INTEGER","A foreign key to the Visit Detail in the VISIT_DETAIL table during which the Measurement was recorded.","measurement","cdm"
|
||||
"83","measurement_source_value","No","VARCHAR(50)","The Measurement name as it appears in the source data. This code is mapped to a Standard Concept in the Standardized Vocabularies and the original code is stored here for reference.","measurement","cdm"
|
||||
"84","measurement_source_concept_id","No","INTEGER","A foreign key to a Concept in the Standard Vocabularies that refers to the code used in the source.","measurement","cdm"
|
||||
"85","unit_source_value","No","VARCHAR(50)","The source code for the unit as it appears in the source data. This code is mapped to a standard unit concept in the Standardized Vocabularies and the original code is stored here for reference.","measurement","cdm"
|
||||
"86","value_source_value","No","VARCHAR(50)","The source value associated with the content of the value_as_number or value_as_concept_id as stored in the source data.","measurement","cdm"
|
||||
"87","note_id","Yes","INTEGER","A unique identifier for each note.","note","cdm"
|
||||
"88","person_id","Yes","INTEGER","A foreign key identifier to the Person about whom the Note was recorded. The demographic details of that Person are stored in the PERSON table.","note","cdm"
|
||||
"89","note_date","Yes","DATE","The date the note was recorded.","note","cdm"
|
||||
"90","note_datetime","No","DATETIME","The date and time the note was recorded.","note","cdm"
|
||||
"91","note_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the type, origin or provenance of the Note.","note","cdm"
|
||||
"92","note_class_concept_id","Yes","INTEGER","A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the HL7 LOINC Document Type Vocabulary classification of the note.","note","cdm"
|
||||
"93","note_title","No","VARCHAR(250)","The title of the Note as it appears in the source.","note","cdm"
|
||||
"94","note_text","Yes","VARCHAR(MAX)","The content of the Note.","note","cdm"
|
||||
"95","encoding_concept_id","Yes","INTEGER","A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the note character encoding type","note","cdm"
|
||||
"96","language_concept_id","Yes","INTEGER","A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the language of the note","note","cdm"
|
||||
"97","provider_id","No","INTEGER","A foreign key to the Provider in the PROVIDER table who took the Note.","note","cdm"
|
||||
"98","visit_occurrence_id","No","INTEGER","A foreign key to the Visit in the VISIT_OCCURRENCE table when the Note was taken.","note","cdm"
|
||||
"99","visit_detail_id","No","INTEGER","A foreign key to the Visit in the VISIT_DETAIL table when the Note was taken.","note","cdm"
|
||||
"100","note_source_value","No","VARCHAR(50)","The source value associated with the origin of the Note","note","cdm"
|
||||
"101","note_nlp_id","Yes","INTEGER","A unique identifier for each term extracted from a Note.","note_nlp","cdm"
|
||||
"102","note_id","Yes","INTEGER","A foreign key to the note table note the term was extracted from.","note_nlp","cdm"
|
||||
"103","section_concept_id","No","INTEGER","A foreign key to the predefined concept in the standardized vocabularies representing the section of the extracted term.","note_nlp","cdm"
|
||||
"104","snippet","No","VARCHAR(250)","A small window of text surrounding the term.","note_nlp","cdm"
|
||||
"105","offset","No","VARCHAR(50)","Character offset of the extracted term in the input note.","note_nlp","cdm"
|
||||
"106","lexical_variant","Yes","VARCHAR(250)","Raw text extracted from the NLP tool.","note_nlp","cdm"
|
||||
"107","note_nlp_concept_id","No","INTEGER","A foreign key to the predefined concept in the standardized vocabularies reflecting the normalized concept for the extracted term. Domain of the term is represented as part of the concept table.","note_nlp","cdm"
|
||||
"108","note_nlp_source_concept_id","No","INTEGER","A foreign key to a concept that refers to the code in the source vocabulary used by the NLP system","note_nlp","cdm"
|
||||
"109","nlp_system","No","VARCHAR(250)","Name and version of the NLP system that extracted the term.useful for data provenance.","note_nlp","cdm"
|
||||
"110","nlp_date","Yes","DATE","The date of the note processing.useful for data provenance.","note_nlp","cdm"
|
||||
"111","nlp_datetime","No","DATETIME","The date and time of the note processing. Useful for data provenance.","note_nlp","cdm"
|
||||
"112","term_exists","No","VARCHAR(1)","A summary modifier that signifies presence or absence of the term for a given patient. Useful for quick querying.","note_nlp","cdm"
|
||||
"113","term_temporal","No","VARCHAR(50)","An optional time modifier associated with the extracted term. (For now “past” or “present” only). Standardize it later.","note_nlp","cdm"
|
||||
"114","term_modifiers","No","VARCHAR(2000)","A compact description of all the modifiers of the specific term extracted by the NLP system. (e.g. “son has rash” ? “negated=no,subject=family, certainty=undef,conditional=false,general=false”).","note_nlp","cdm"
|
||||
"115","observation_id","Yes","INTEGER","A unique identifier for each observation.","observation","cdm"
|
||||
"116","person_id","Yes","INTEGER","A foreign key identifier to the Person about whom the observation was recorded. The demographic details of that Person are stored in the PERSON table.","observation","cdm"
|
||||
"117","observation_concept_id","Yes","INTEGER","A foreign key to the standard observation concept identifier in the Standardized Vocabularies.","observation","cdm"
|
||||
"118","observation_date","Yes","DATE","The date of the observation.","observation","cdm"
|
||||
"119","observation_datetime","No","DATETIME","The date and time of the observation.","observation","cdm"
|
||||
"120","observation_type_concept_id","Yes","INTEGER","A foreign key to the predefined concept identifier in the Standardized Vocabularies reflecting the type of the observation.","observation","cdm"
|
||||
"121","value_as_number","No","FLOAT","The observation result stored as a number. This is applicable to observations where the result is expressed as a numeric value.","observation","cdm"
|
||||
"122","value_as_string","No","VARCHAR(60)","The observation result stored as a string. This is applicable to observations where the result is expressed as verbatim text.","observation","cdm"
|
||||
"123","value_as_concept_id","No","INTEGER","A foreign key to an observation result stored as a Concept ID. This is applicable to observations where the result can be expressed as a Standard Concept from the Standardized Vocabularies (e.g., positive/negative, present/absent, low/high, etc.).","observation","cdm"
|
||||
"124","qualifier_concept_id","No","INTEGER","A foreign key to a Standard Concept ID for a qualifier (e.g., severity of drug-drug interaction alert)","observation","cdm"
|
||||
"125","unit_concept_id","No","INTEGER","A foreign key to a Standard Concept ID of measurement units in the Standardized Vocabularies.","observation","cdm"
|
||||
"126","provider_id","No","INTEGER","A foreign key to the provider in the PROVIDER table who was responsible for making the observation.","observation","cdm"
|
||||
"127","visit_occurrence_id","No","INTEGER","A foreign key to the visit in the VISIT_OCCURRENCE table during which the observation was recorded.","observation","cdm"
|
||||
"128","visit_detail_id","No","INTEGER","A foreign key to the visit in the VISIT_DETAIL table during which the observation was recorded.","observation","cdm"
|
||||
"129","observation_source_value","No","VARCHAR(50)","The observation code as it appears in the source data. This code is mapped to a Standard Concept in the Standardized Vocabularies and the original code is, stored here for reference.","observation","cdm"
|
||||
"130","observation_source_concept_id","No","INTEGER","A foreign key to a Concept that refers to the code used in the source.","observation","cdm"
|
||||
"131","unit_source_value","No","VARCHAR(50)","The source code for the unit as it appears in the source data. This code is mapped to a standard unit concept in the Standardized Vocabularies and the original code is, stored here for reference.","observation","cdm"
|
||||
"132","qualifier_source_value","No","VARCHAR(50)","The source value associated with a qualifier to characterize the observation","observation","cdm"
|
||||
"133","observation_period_id","Yes","INTEGER","A unique identifier for each observation period.","observation_period","cdm"
|
||||
"134","person_id","Yes","INTEGER","A foreign key identifier to the person for whom the observation period is defined. The demographic details of that person are stored in the person table.","observation_period","cdm"
|
||||
"135","observation_period_start_date","Yes","DATE","The start date of the observation period for which data are available from the data source.","observation_period","cdm"
|
||||
"136","observation_period_end_date","Yes","DATE","The end date of the observation period for which data are available from the data source.","observation_period","cdm"
|
||||
"137","period_type_concept_id","Yes","INTEGER","A foreign key identifier to the predefined concept in the Standardized Vocabularies reflecting the source of the observation period information","observation_period","cdm"
|
||||
"138","person_id","Yes","INTEGER","A unique identifier for each person.","person","cdm"
|
||||
"139","gender_concept_id","Yes","INTEGER","A foreign key that refers to an identifier in the CONCEPT table for the unique gender of the person.","person","cdm"
|
||||
"140","year_of_birth","Yes","INTEGER","The year of birth of the person. For data sources with date of birth, the year is extracted. For data sources where the year of birth is not available, the approximate year of birth is derived based on any age group categorization available.","person","cdm"
|
||||
"141","month_of_birth","No","INTEGER","The month of birth of the person. For data sources that provide the precise date of birth, the month is extracted and stored in this field.","person","cdm"
|
||||
"142","day_of_birth","No","INTEGER","The day of the month of birth of the person. For data sources that provide the precise date of birth, the day is extracted and stored in this field.","person","cdm"
|
||||
"143","birth_datetime","No","DATETIME","The date and time of birth of the person.","person","cdm"
|
||||
"144","race_concept_id","Yes","INTEGER","A foreign key that refers to an identifier in the CONCEPT table for the unique race of the person.","person","cdm"
|
||||
"145","ethnicity_concept_id","Yes","INTEGER","A foreign key that refers to the standard concept identifier in the Standardized Vocabularies for the ethnicity of the person.","person","cdm"
|
||||
"146","location_id","No","INTEGER","A foreign key to the place of residency for the person in the location table, where the detailed address information is stored.","person","cdm"
|
||||
"147","provider_id","No","INTEGER","A foreign key to the primary care provider the person is seeing in the provider table.","person","cdm"
|
||||
"148","care_site_id","No","INTEGER","A foreign key to the site of primary care in the care_site table, where the details of the care site are stored.","person","cdm"
|
||||
"149","person_source_value","No","VARCHAR(50)","An (encrypted) key derived from the person identifier in the source data. This is necessary when a use case requires a link back to the person data at the source dataset.","person","cdm"
|
||||
"150","gender_source_value","No","VARCHAR(50)","The source code for the gender of the person as it appears in the source data. The person’s gender is mapped to a standard gender concept in the Standardized Vocabularies; the original value is stored here for reference.","person","cdm"
|
||||
"151","gender_source_concept_id","No","INTEGER","A foreign key to the gender concept that refers to the code used in the source.","person","cdm"
|
||||
"152","race_source_value","No","VARCHAR(50)","The source code for the race of the person as it appears in the source data. The person race is mapped to a standard race concept in the Standardized Vocabularies and the original value is stored here for reference.","person","cdm"
|
||||
"153","race_source_concept_id","No","INTEGER","A foreign key to the race concept that refers to the code used in the source.","person","cdm"
|
||||
"154","ethnicity_source_value","No","VARCHAR(50)","The source code for the ethnicity of the person as it appears in the source data. The person ethnicity is mapped to a standard ethnicity concept in the Standardized Vocabularies and the original code is, stored here for reference.","person","cdm"
|
||||
"155","ethnicity_source_concept_id","No","INTEGER","A foreign key to the ethnicity concept that refers to the code used in the source.","person","cdm"
|
||||
"156","procedure_occurrence_id","Yes","INTEGER","A system-generated unique identifier for each Procedure Occurrence.","procedure_occurrence","cdm"
|
||||
"157","person_id","Yes","INTEGER","A foreign key identifier to the Person who is subjected to the Procedure. The demographic details of that Person are stored in the PERSON table.","procedure_occurrence","cdm"
|
||||
"158","procedure_concept_id","Yes","INTEGER","A foreign key that refers to a standard procedure Concept identifier in the Standardized Vocabularies.","procedure_occurrence","cdm"
|
||||
"159","procedure_date","Yes","DATE","The date on which the Procedure was performed.","procedure_occurrence","cdm"
|
||||
"160","procedure_datetime","No","DATETIME","The date and time on which the Procedure was performed.","procedure_occurrence","cdm"
|
||||
"161","procedure_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the type of source data from which the procedure record is derived.","procedure_occurrence","cdm"
|
||||
"162","modifier_concept_id","No","INTEGER","A foreign key to a Standard Concept identifier for a modifier to the Procedure (e.g. bilateral)","procedure_occurrence","cdm"
|
||||
"163","quantity","No","INTEGER","The quantity of procedures ordered or administered.","procedure_occurrence","cdm"
|
||||
"164","provider_id","No","INTEGER","A foreign key to the provider in the PROVIDER table who was responsible for carrying out the procedure.","procedure_occurrence","cdm"
|
||||
"165","visit_occurrence_id","No","INTEGER","A foreign key to the Visit in the VISIT_OCCURRENCE table during which the Procedure was carried out.","procedure_occurrence","cdm"
|
||||
"166","visit_detail_id","No","INTEGER","A foreign key to the Visit Detail in the VISIT_DETAIL table during which the Procedure was carried out.","procedure_occurrence","cdm"
|
||||
"167","procedure_source_value","No","VARCHAR(50)","The source code for the Procedure as it appears in the source data. This code is mapped to a standard procedure Concept in the Standardized Vocabularies and the original code is, stored here for reference. Procedure source codes are typically ICD-9-Proc, CPT-4, HCPCS or OPCS-4 codes.","procedure_occurrence","cdm"
|
||||
"168","procedure_source_concept_id","No","INTEGER","A foreign key to a Procedure Concept that refers to the code used in the source.","procedure_occurrence","cdm"
|
||||
"169","modifier_source_value","No","VARCHAR(50)","The source code for the qualifier as it appears in the source data.","procedure_occurrence","cdm"
|
||||
"170","specimen_id","Yes","INTEGER","A unique identifier for each specimen.","specimen","cdm"
|
||||
"171","person_id","Yes","INTEGER","A foreign key identifier to the Person for whom the Specimen is recorded.","specimen","cdm"
|
||||
"172","specimen_concept_id","Yes","INTEGER","A foreign key referring to a Standard Concept identifier in the Standardized Vocabularies for the Specimen.","specimen","cdm"
|
||||
"173","specimen_type_concept_id","Yes","INTEGER","A foreign key referring to the Concept identifier in the Standardized Vocabularies reflecting the system of record from which the Specimen was represented in the source data.","specimen","cdm"
|
||||
"174","specimen_date","Yes","DATE","The date the specimen was obtained from the Person.","specimen","cdm"
|
||||
"175","specimen_datetime","No","DATETIME","The date and time on the date when the Specimen was obtained from the person.","specimen","cdm"
|
||||
"176","quantity","No","FLOAT","The amount of specimen collection from the person during the sampling procedure.","specimen","cdm"
|
||||
"177","unit_concept_id","No","INTEGER","A foreign key to a Standard Concept identifier for the Unit associated with the numeric quantity of the Specimen collection.","specimen","cdm"
|
||||
"178","anatomic_site_concept_id","No","INTEGER","A foreign key to a Standard Concept identifier for the anatomic location of specimen collection.","specimen","cdm"
|
||||
"179","disease_status_concept_id","No","INTEGER","A foreign key to a Standard Concept identifier for the Disease Status of specimen collection.","specimen","cdm"
|
||||
"180","specimen_source_id","No","VARCHAR(50)","The Specimen identifier as it appears in the source data.","specimen","cdm"
|
||||
"181","specimen_source_value","No","VARCHAR(50)","The Specimen value as it appears in the source data. This value is mapped to a Standard Concept in the Standardized Vocabularies and the original code is, stored here for reference.","specimen","cdm"
|
||||
"182","unit_source_value","No","VARCHAR(50)","The information about the Unit as detailed in the source.","specimen","cdm"
|
||||
"183","anatomic_site_source_value","No","VARCHAR(50)","The information about the anatomic site as detailed in the source.","specimen","cdm"
|
||||
"184","disease_status_source_value","No","VARCHAR(50)","The information about the disease status as detailed in the source.","specimen","cdm"
|
||||
"185","visit_detail_id","Yes","INTEGER","A unique identifier for each Person's visit or encounter at a healthcare provider.","visit_detail","cdm"
|
||||
"186","person_id","Yes","INTEGER","A foreign key identifier to the Person for whom the visit is recorded. The demographic details of that Person are stored in the PERSON table.","visit_detail","cdm"
|
||||
"187","visit_concept_id","Yes","INTEGER","A foreign key that refers to a visit Concept identifier in the Standardized Vocabularies.","visit_detail","cdm"
|
||||
"188","visit_start_date","Yes","DATE","The start date of the visit.","visit_detail","cdm"
|
||||
"189","visit_start_datetime","No","DATETIME","The date and time of the visit started.","visit_detail","cdm"
|
||||
"190","visit_end_date","Yes","DATE","The end date of the visit. If this is a one-day visit the end date should match the start date.","visit_detail","cdm"
|
||||
"191","visit_end_datetime","No","DATETIME","The date and time of the visit end.","visit_detail","cdm"
|
||||
"192","visit_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the type of source data from which the visit record is derived.","visit_detail","cdm"
|
||||
"193","provider_id","No","INTEGER","A foreign key to the provider in the provider table who was associated with the visit.","visit_detail","cdm"
|
||||
"194","care_site_id","No","INTEGER","A foreign key to the care site in the care site table that was visited.","visit_detail","cdm"
|
||||
"195","visit_source_value","No","STRING(50)","The source code for the visit as it appears in the source data.","visit_detail","cdm"
|
||||
"196","visit_source_concept_id","No","INTEGER","A foreign key to a Concept that refers to the code used in the source.","visit_detail","cdm"
|
||||
"197","admitting_source_value","No","VARCHAR(50)","The source code for the admitting source as it appears in the source data.","visit_detail","cdm"
|
||||
"198","admitting_source_concept_id","No","INTEGER","A foreign key to the predefined concept in the Place of Service Vocabulary reflecting the admitting source for a visit.","visit_detail","cdm"
|
||||
"199","discharge_to_source_value","No","VARCHAR(50)","The source code for the discharge disposition as it appears in the source data.","visit_detail","cdm"
|
||||
"200","discharge_to_concept_id","No","INTEGER","A foreign key to the predefined concept in the Place of Service Vocabulary reflecting the discharge disposition for a visit.","visit_detail","cdm"
|
||||
"201","preceding_visit_detail_id","No","INTEGER","A foreign key to the VISIT_DETAIL table of the visit immediately preceding this visit","visit_detail","cdm"
|
||||
"202","visit_detail_parent_id","No","INTEGER","A foreign key to the VISIT_DETAIL table record to represent the immediate parent visit-detail record.","visit_detail","cdm"
|
||||
"203","visit_occurrence_id","Yes","INTEGER","A foreign key that refers to the record in the VISIT_OCCURRENCE table. This is a required field, because for every visit_detail is a child of visit_occurrence and cannot exist without a corresponding parent record in visit_occurrence.","visit_detail","cdm"
|
||||
"204","visit_occurrence_id","Yes","INTEGER","A unique identifier for each Person's visit or encounter at a healthcare provider.","visit_occurrence","cdm"
|
||||
"205","person_id","Yes","INTEGER","A foreign key identifier to the Person for whom the visit is recorded. The demographic details of that Person are stored in the PERSON table.","visit_occurrence","cdm"
|
||||
"206","visit_concept_id","Yes","INTEGER","A foreign key that refers to a visit Concept identifier in the Standardized Vocabularies.","visit_occurrence","cdm"
|
||||
"207","visit_start_date","Yes","DATE","The start date of the visit.","visit_occurrence","cdm"
|
||||
"208","visit_start_datetime","No","DATETIME","The date and time of the visit started.","visit_occurrence","cdm"
|
||||
"209","visit_end_date","Yes","DATE","The end date of the visit. If this is a one-day visit the end date should match the start date.","visit_occurrence","cdm"
|
||||
"210","visit_end_datetime","No","DATETIME","The date and time of the visit end.","visit_occurrence","cdm"
|
||||
"211","visit_type_concept_id","Yes","INTEGER","A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the type of source data from which the visit record is derived.","visit_occurrence","cdm"
|
||||
"212","provider_id","No","INTEGER","A foreign key to the provider in the provider table who was associated with the visit.","visit_occurrence","cdm"
|
||||
"213","care_site_id","No","INTEGER","A foreign key to the care site in the care site table that was visited.","visit_occurrence","cdm"
|
||||
"214","visit_source_value","No","VARCHAR(50)","The source code for the visit as it appears in the source data.","visit_occurrence","cdm"
|
||||
"215","visit_source_concept_id","No","INTEGER","A foreign key to a Concept that refers to the code used in the source.","visit_occurrence","cdm"
|
||||
"216","admitting_source_concept_id","No","INTEGER","A foreign key to the predefined concept in the Place of Service Vocabulary reflecting the admitting source for a visit.","visit_occurrence","cdm"
|
||||
"217","admitting_source_value","No","VARCHAR(50)","The source code for the admitting source as it appears in the source data.","visit_occurrence","cdm"
|
||||
"218","discharge_to_concept_id","No","INTEGER","A foreign key to the predefined concept in the Place of Service Vocabulary reflecting the discharge disposition for a visit.","visit_occurrence","cdm"
|
||||
"219","discharge_to_source_value","No","VARCHAR(50)","The source code for the discharge disposition as it appears in the source data.","visit_occurrence","cdm"
|
||||
"220","preceding_visit_occurrence_id","No","INTEGER","A foreign key to the VISIT_OCCURRENCE table of the visit immediately preceding this visit","visit_occurrence","cdm"
|
||||
"221","cohort_definition_id","Yes","INTEGER","A foreign key to a record in the COHORT_DEFINITION table containing relevant Cohort Definition information.","cohort","results"
|
||||
"222","subject_id","Yes","INTEGER","A foreign key to the subject in the cohort. These could be referring to records in the PERSON, PROVIDER, VISIT_OCCURRENCE table.","cohort","results"
|
||||
"223","cohort_start_date","Yes","DATE","The date when the Cohort Definition criteria for the Person, Provider or Visit first match.","cohort","results"
|
||||
"224","cohort_end_date","Yes","DATE","The date when the Cohort Definition criteria for the Person, Provider or Visit no longer match or the Cohort membership was terminated.","cohort","results"
|
||||
"225","cohort_definition_id","Yes","INTEGER","A foreign key to a record in the [COHORT_DEFINITION](https://github.com/OHDSI/CommonDataModel/wiki/COHORT_DEFINITION) table containing relevant Cohort Definition information.","cohort_attribute","results"
|
||||
"226","subject_id","Yes","INTEGER","A foreign key to the subject in the Cohort. These could be referring to records in the PERSON, PROVIDER, VISIT_OCCURRENCE table.","cohort_attribute","results"
|
||||
"227","cohort_start_date","Yes","DATE","The date when the Cohort Definition criteria for the Person, Provider or Visit first match.","cohort_attribute","results"
|
||||
"228","cohort_end_date","Yes","DATE","The date when the Cohort Definition criteria for the Person, Provider or Visit no longer match or the Cohort membership was terminated.","cohort_attribute","results"
|
||||
"229","attribute_definition_id","Yes","INTEGER","A foreign key to a record in the [ATTRIBUTE_DEFINITION](https://github.com/OHDSI/CommonDataModel/wiki/ATTRIBUTE_DEFINITION) table containing relevant Attribute Definition information.","cohort_attribute","results"
|
||||
"230","value_as_number","No","FLOAT","The attribute result stored as a number. This is applicable to attributes where the result is expressed as a numeric value.","cohort_attribute","results"
|
||||
"231","value_as_concept_id","No","INTEGER","The attribute result stored as a Concept ID. This is applicable to attributes where the result is expressed as a categorical value.","cohort_attribute","results"
|
||||
"232","condition_era_id","Yes","INTEGER","A unique identifier for each Condition Era.","condition_era","cdm"
|
||||
"233","person_id","Yes","INTEGER","A foreign key identifier to the Person who is experiencing the Condition during the Condition Era. The demographic details of that Person are stored in the PERSON table.","condition_era","cdm"
|
||||
"234","condition_concept_id","Yes","INTEGER","A foreign key that refers to a standard Condition Concept identifier in the Standardized Vocabularies.","condition_era","cdm"
|
||||
"235","condition_era_start_date","Yes","DATE","The start date for the Condition Era constructed from the individual instances of Condition Occurrences. It is the start date of the very first chronologically recorded instance of the condition.","condition_era","cdm"
|
||||
"236","condition_era_end_date","Yes","DATE","The end date for the Condition Era constructed from the individual instances of Condition Occurrences. It is the end date of the final continuously recorded instance of the Condition.","condition_era","cdm"
|
||||
"237","condition_occurrence_count","No","INTEGER","The number of individual Condition Occurrences used to construct the condition era.","condition_era","cdm"
|
||||
"238","dose_era_id","Yes","INTEGER","A unique identifier for each Dose Era.","dose_era","cdm"
|
||||
"239","person_id","Yes","INTEGER","A foreign key identifier to the Person who is subjected to the drug during the drug era. The demographic details of that Person are stored in the PERSON table.","dose_era","cdm"
|
||||
"240","drug_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Concept identifier in the Standardized Vocabularies for the active Ingredient Concept.","dose_era","cdm"
|
||||
"241","unit_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Concept identifier in the Standardized Vocabularies for the unit concept.","dose_era","cdm"
|
||||
"242","dose_value","Yes","FLOAT","The numeric value of the dose.","dose_era","cdm"
|
||||
"243","dose_era_start_date","Yes","DATE","The start date for the drug era constructed from the individual instances of drug exposures. It is the start date of the very first chronologically recorded instance of utilization of a drug.","dose_era","cdm"
|
||||
"244","dose_era_end_date","Yes","DATE","The end date for the drug era constructed from the individual instance of drug exposures. It is the end date of the final continuously recorded instance of utilization of a drug.","dose_era","cdm"
|
||||
"245","drug_era_id","Yes","INTEGER","A unique identifier for each Drug Era.","drug_era","cdm"
|
||||
"246","person_id","Yes","INTEGER","A foreign key identifier to the Person who is subjected to the Drug during the fDrug Era. The demographic details of that Person are stored in the PERSON table.","drug_era","cdm"
|
||||
"247","drug_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Concept identifier in the Standardized Vocabularies for the Ingredient Concept.","drug_era","cdm"
|
||||
"248","drug_era_start_date","Yes","DATE","The start date for the Drug Era constructed from the individual instances of Drug Exposures. It is the start date of the very first chronologically recorded instance of conutilization of a Drug.","drug_era","cdm"
|
||||
"249","drug_era_end_date","Yes","DATE","The end date for the drug era constructed from the individual instance of drug exposures. It is the end date of the final continuously recorded instance of utilization of a drug.","drug_era","cdm"
|
||||
"250","drug_exposure_count","No","INTEGER","The number of individual Drug Exposure occurrences used to construct the Drug Era.","drug_era","cdm"
|
||||
"251","gap_days","No","INTEGER","The number of days that are not covered by DRUG_EXPOSURE records that were used to make up the era record.","drug_era","cdm"
|
||||
"252","cost_id","Yes","INTEGER","A unique identifier for each COST record.","cost","cdm"
|
||||
"253","cost_event_id","Yes","INTEGER","A foreign key identifier to the event (e.g. Measurement, Procedure, Visit, Drug Exposure, etc) record for which cost data are recorded.","cost","cdm"
|
||||
"254","cost_domain_id","Yes","VARCHAR(20)","The concept representing the domain of the cost event, from which the corresponding table can be inferred that contains the entity for which cost information is recorded.","cost","cdm"
|
||||
"255","cost_type_concept_id","Yes","INTEGER","A foreign key identifier to a concept in the CONCEPT table for the provenance or the source of the COST data: Calculated from insurance claim information, provider revenue, calculated from cost-to-charge ratio, reported from accounting database, etc.","cost","cdm"
|
||||
"256","currency_concept_id","No","INTEGER","A foreign key identifier to the concept representing the 3-letter code used to delineate international currencies, such as USD for US Dollar.","cost","cdm"
|
||||
"257","total_charge","No","FLOAT","The total amount charged by some provider of goods or services (e.g. hospital, physician pharmacy, dme provider) to payers (insurance companies, the patient).","cost","cdm"
|
||||
"258","total_cost","No","FLOAT","The cost incurred by the provider of goods or services.","cost","cdm"
|
||||
"259","total_paid","No","FLOAT","The total amount actually paid from all payers for goods or services of the provider.","cost","cdm"
|
||||
"260","paid_by_payer","No","FLOAT","The amount paid by the Payer for the goods or services.","cost","cdm"
|
||||
"261","paid_by_patient","No","FLOAT","The total amount paid by the Person as a share of the expenses.","cost","cdm"
|
||||
"262","paid_patient_copay","No","FLOAT","The amount paid by the Person as a fixed contribution to the expenses.","cost","cdm"
|
||||
"263","paid_patient_coinsurance","No","FLOAT","The amount paid by the Person as a joint assumption of risk. Typically, this is a percentage of the expenses defined by the Payer Plan after the Person's deductible is exceeded.","cost","cdm"
|
||||
"264","paid_patient_deductible","No","FLOAT","The amount paid by the Person that is counted toward the deductible defined by the Payer Plan. paid_patient_deductible does contribute to the paid_by_patient variable.","cost","cdm"
|
||||
"265","paid_by_primary","No","FLOAT","The amount paid by a primary Payer through the coordination of benefits.","cost","cdm"
|
||||
"266","paid_ingredient_cost","No","FLOAT","The amount paid by the Payer to a pharmacy for the drug, excluding the amount paid for dispensing the drug. paid_ingredient_cost contributes to the paid_by_payer field if this field is populated with a nonzero value.","cost","cdm"
|
||||
"267","paid_dispensing_fee","No","FLOAT","The amount paid by the Payer to a pharmacy for dispensing a drug, excluding the amount paid for the drug ingredient. paid_dispensing_fee contributes to the paid_by_payer field if this field is populated with a nonzero value.","cost","cdm"
|
||||
"268","payer_plan_period_id","No","INTEGER","A foreign key to the PAYER_PLAN_PERIOD table, where the details of the Payer, Plan and Family are stored. Record the payer_plan_id that relates to the payer who contributed to the paid_by_payer field.","cost","cdm"
|
||||
"269","amount_allowed","No","FLOAT","The contracted amount agreed between the payer and provider.","cost","cdm"
|
||||
"270","revenue_code_concept_id","No","INTEGER","A foreign key referring to a Standard Concept ID in the Standardized Vocabularies for Revenue codes.","cost","cdm"
|
||||
"271","revenue_code_source_value","No","VARCHAR(50)","The source code for the Revenue code as it appears in the source data, stored here for reference.","cost","cdm"
|
||||
"272","drg_concept_id","No","INTEGER","A foreign key to the predefined concept in the DRG Vocabulary reflecting the DRG for a visit.","cost","cdm"
|
||||
"273","drg_source_value","No","VARCHAR(3)","The 3-digit DRG source code as it appears in the source data.","cost","cdm"
|
||||
"274","payer_plan_period_id","Yes","INTEGER","A identifier for each unique combination of payer, sponsor, plan, family code and time span.","payer_plan_period","cdm"
|
||||
"275","person_id","Yes","INTEGER","A foreign key identifier to the Person covered by the payer. The demographic details of that Person are stored in the PERSON table.","payer_plan_period","cdm"
|
||||
"276","payer_plan_period_start_date","Yes","DATE","The start date of the payer plan period.","payer_plan_period","cdm"
|
||||
"277","payer_plan_period_end_date","Yes","DATE","The end date of the payer plan period.","payer_plan_period","cdm"
|
||||
"278","payer_concept_id","No","INTEGER","A foreign key that refers to a Standard Payer concept identifiers in the Standardized Vocabularies","payer_plan_period","cdm"
|
||||
"279","payer_source_value","No","VARCHAR(50)","The source code for the payer as it appears in the source data.","payer_plan_period","cdm"
|
||||
"280","payer_source_concept_id","No","INTEGER","A foreign key to a payer concept that refers to the code used in the source.","payer_plan_period","cdm"
|
||||
"281","plan_concept_id","No","INTEGER","A foreign key that refers to a Standard plan that represents the health benefit plan in the Standardized Vocabularies","payer_plan_period","cdm"
|
||||
"282","plan_source_value","No","VARCHAR(50)","The source code for the Person's health benefit plan as it appears in the source data.","payer_plan_period","cdm"
|
||||
"283","plan_source_concept_id","No","INTEGER","A foreign key to a plan concept that refers to the code used in the source.","payer_plan_period","cdm"
|
||||
"284","sponsor_concept_id","No","INTEGER","A foreign key that refers to a Standard plan that represents the sponsor in the Standardized Vocabularies","payer_plan_period","cdm"
|
||||
"285","sponsor_source_value","No","VARCHAR(50)","The source code for the Person's sponsor of the health plan as it appears in the source data.","payer_plan_period","cdm"
|
||||
"286","sponsor_source_concept_id*","No","INTEGER","A foreign key to a sponsor concept that refers to the code used in the source.","payer_plan_period","cdm"
|
||||
"287","family_source_value","No","VARCHAR(50)","The source code for the Person's family as it appears in the source data.","payer_plan_period","cdm"
|
||||
"288","stop_reason_concept_id","No","INTEGER","A foreign key that refers to a Standard termination reason that represents the reason for the termination in the Standardized Vocabularies.","payer_plan_period","cdm"
|
||||
"289","stop_reason_source_value","No","VARCHAR(50)","The reason for stop-coverage of the record.","payer_plan_period","cdm"
|
||||
"290","stop_reason_source_concept_id","No","INTEGER","A foreign key to a stop-coverage concept that refers to the code used in the source.","payer_plan_period","cdm"
|
||||
"291","care_site_id","Yes","INTEGER","A unique identifier for each Care Site.","care_site","cdm"
|
||||
"292","care_site_name","No","VARCHAR(255)","The verbatim description or name of the Care Site as in data source","care_site","cdm"
|
||||
"293","place_of_service_concept_id","No","INTEGER","A foreign key that refers to a Place of Service Concept ID in the Standardized Vocabularies.","care_site","cdm"
|
||||
"294","location_id","No","INTEGER","A foreign key to the geographic Location in the LOCATION table, where the detailed address information is stored.","care_site","cdm"
|
||||
"295","care_site_source_value","No","VARCHAR(50)","The identifier for the Care Site in the source data, stored here for reference.","care_site","cdm"
|
||||
"296","place_of_service_source_value","No","VARCHAR(50)","The source code for the Place of Service as it appears in the source data, stored here for reference.","care_site","cdm"
|
||||
"297","location_id","Yes","INTEGER","A unique identifier for each geographic location.","location","cdm"
|
||||
"298","address_1","No","VARCHAR(50)","The address field 1, typically used for the street address, as it appears in the source data.","location","cdm"
|
||||
"299","address_2","No","VARCHAR(50)","The address field 2, typically used for additional detail such as buildings, suites, floors, as it appears in the source data.","location","cdm"
|
||||
"300","city","No","VARCHAR(50)","The city field as it appears in the source data.","location","cdm"
|
||||
"301","state","No","VARCHAR(2)","The state field as it appears in the source data.","location","cdm"
|
||||
"302","zip","No","VARCHAR(9)","The zip or postal code.","location","cdm"
|
||||
"303","county","No","VARCHAR(20)","The county.","location","cdm"
|
||||
"304","location_source_value","No","VARCHAR(50)","The verbatim information that is used to uniquely identify the location as it appears in the source data.","location","cdm"
|
||||
"305","provider_id","Yes","INTEGER","A unique identifier for each Provider.","provider","cdm"
|
||||
"306","provider_name","No","VARCHAR(255)","A description of the Provider.","provider","cdm"
|
||||
"307","npi","No","VARCHAR(20)","The National Provider Identifier (NPI) of the provider.","provider","cdm"
|
||||
"308","dea","No","VARCHAR(20)","The Drug Enforcement Administration (DEA) number of the provider.","provider","cdm"
|
||||
"309","specialty_concept_id","No","INTEGER","A foreign key to a Standard Specialty Concept ID in the Standardized Vocabularies.","provider","cdm"
|
||||
"310","care_site_id","No","INTEGER","A foreign key to the main Care Site where the provider is practicing.","provider","cdm"
|
||||
"311","year_of_birth","No","INTEGER","The year of birth of the Provider.","provider","cdm"
|
||||
"312","gender_concept_id","No","INTEGER","The gender of the Provider.","provider","cdm"
|
||||
"313","provider_source_value","No","VARCHAR(50)","The identifier used for the Provider in the source data, stored here for reference.","provider","cdm"
|
||||
"314","specialty_source_value","No","VARCHAR(50)","The source code for the Provider specialty as it appears in the source data, stored here for reference.","provider","cdm"
|
||||
"315","specialty_source_concept_id","No","INTEGER","A foreign key to a Concept that refers to the code used in the source.","provider","cdm"
|
||||
"316","gender_source_value","No","VARCHAR(50)","The gender code for the Provider as it appears in the source data, stored here for reference.","provider","cdm"
|
||||
"317","gender_source_concept_id","No","INTEGER","A foreign key to a Concept that refers to the code used in the source.","provider","cdm"
|
||||
"318","cdm_source_name","Yes","VARCHAR(255)","The full name of the source","cdm_source","cdm"
|
||||
"319","cdm_source_abbreviation","No","VARCHAR(25)","An abbreviation of the name","cdm_source","cdm"
|
||||
"320","cdm_holder","No","VARCHAR(255)","The name of the organization responsible for the development of the CDM instance","cdm_source","cdm"
|
||||
"321","source_description","No","CLOB","A description of the source data origin and purpose for collection. The description may contain a summary of the period of time that is expected to be covered by this dataset.","cdm_source","cdm"
|
||||
"322","source_documentation_reference","No","VARCHAR(255)","URL or other external reference to location of source documentation","cdm_source","cdm"
|
||||
"323","cdm_etl_reference","No","VARCHAR(255)","URL or other external reference to location of ETL specification documentation and ETL source code","cdm_source","cdm"
|
||||
"324","source_release_date","No","DATE","The date for which the source data are most current, such as the last day of data capture","cdm_source","cdm"
|
||||
"325","cdm_release_date","No","DATE","The date when the CDM was instantiated","cdm_source","cdm"
|
||||
"326","cdm_version","No","VARCHAR(10)","The version of CDM used","cdm_source","cdm"
|
||||
"327","vocabulary_version","No","VARCHAR(20)","The version of the vocabulary used","cdm_source","cdm"
|
||||
"328","metadata_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Metadata Concept identifier in the Standardized Vocabularies.","metadata","cdm"
|
||||
"329","metadata_type_concept_id","Yes","INTEGER","A foreign key that refers to a Standard Type Concept identifier in the Standardized Vocabularies.","metadata","cdm"
|
||||
"330","name","Yes","VARCHAR(250)","The name of the Concept stored in metadata_concept_id or a description of the data being stored.","metadata","cdm"
|
||||
"331","value_as_string","No","NVARCHAR","The metadata value stored as a string.","metadata","cdm"
|
||||
"332","value_as_concept_id","No","INTEGER","A foreign key to a metadata value stored as a Concept ID.","metadata","cdm"
|
||||
"333","metadata date","No","DATE","The date associated with the metadata","metadata","cdm"
|
||||
"334","metadata_datetime","No","DATETIME","The date and time associated with the metadata","metadata","cdm"
|
||||
"335","attribute_definition_id","Yes","INTEGER","A unique identifier for each Attribute.","attribute_definition","cdm"
|
||||
"336","attribute_name","Yes","VARCHAR(255)","A short description of the Attribute.","attribute_definition","cdm"
|
||||
"337","attribute_description","No","VARCHAR(MAX)","A complete description of the Attribute definition","attribute_definition","cdm"
|
||||
"338","attribute_type_concept_id","Yes","INTEGER","Type defining what kind of Attribute Definition the record represents and how the syntax may be executed","attribute_definition","cdm"
|
||||
"339","attribute_syntax","No","VARCHAR(MAX)","Syntax or code to operationalize the Attribute definition","attribute_definition","cdm"
|
||||
"340","cohort_definition_id","Yes","INTEGER","A unique identifier for each Cohort.","cohort_definition","cdm"
|
||||
"341","cohort_definition_name","Yes","VARCHAR(255)","A short description of the Cohort.","cohort_definition","cdm"
|
||||
"342","cohort_definition_description","No","VARCHAR(MAX)","A complete description of the Cohort definition","cohort_definition","cdm"
|
||||
"343","definition_type_concept_id","Yes","INTEGER","Type defining what kind of Cohort Definition the record represents and how the syntax may be executed","cohort_definition","cdm"
|
||||
"344","cohort_definition_syntax","No","VARCHAR(MAX)","Syntax or code to operationalize the Cohort definition","cohort_definition","cdm"
|
||||
"345","subject_concept_id","Yes","INTEGER","A foreign key to the Concept to which defines the domain of subjects that are members of the cohort (e.g., Person, Provider, Visit).","cohort_definition","cdm"
|
||||
"346","cohort_initiation_date","No","DATE","A date to indicate when the Cohort was initiated in the COHORT table","cohort_definition","cdm"
|
||||
"347","concept_id","Yes","INTEGER","A unique identifier for each Concept across all domains.","concept","cdm"
|
||||
"348","concept_name","Yes","VARCHAR(255)","An unambiguous, meaningful and descriptive name for the Concept.","concept","cdm"
|
||||
"349","domain_id","Yes","VARCHAR(20)","A foreign key to the [DOMAIN](https://github.com/OHDSI/CommonDataModel/wiki/DOMAIN) table the Concept belongs to.","concept","cdm"
|
||||
"350","vocabulary_id","Yes","VARCHAR(20)","A foreign key to the [VOCABULARY](https://github.com/OHDSI/CommonDataModel/wiki/VOCABULARY) table indicating from which source the Concept has been adapted.","concept","cdm"
|
||||
"351","concept_class_id","Yes","VARCHAR(20)","The attribute or concept class of the Concept. Examples are 'Clinical Drug', 'Ingredient', 'Clinical Finding' etc.","concept","cdm"
|
||||
"352","standard_concept","No","VARCHAR(1)","This flag determines where a Concept is a Standard Concept, i.e. is used in the data, a Classification Concept, or a non-standard Source Concept. The allowables values are 'S' (Standard Concept) and 'C' (Classification Concept), otherwise the content is NULL.","concept","cdm"
|
||||
"353","concept_code","Yes","VARCHAR(50)","The concept code represents the identifier of the Concept in the source vocabulary, such as SNOMED-CT concept IDs, RxNorm RXCUIs etc. Note that concept codes are not unique across vocabularies.","concept","cdm"
|
||||
"354","valid_start_date","Yes","DATE","The date when the Concept was first recorded. The default value is 1-Jan-1970, meaning, the Concept has no (known) date of inception.","concept","cdm"
|
||||
"355","valid_end_date","Yes","DATE","The date when the Concept became invalid because it was deleted or superseded (updated) by a new concept. The default value is 31-Dec-2099, meaning, the Concept is valid until it becomes deprecated.","concept","cdm"
|
||||
"356","invalid_reason","No","VARCHAR(1)","Reason the Concept was invalidated. Possible values are D (deleted), U (replaced with an update) or NULL when valid_end_date has the default value.","concept","cdm"
|
||||
"357","ancestor_concept_id","Yes","INTEGER","A foreign key to the concept in the concept table for the higher-level concept that forms the ancestor in the relationship.","concept_ancestor","cdm"
|
||||
"358","descendant_concept_id","Yes","INTEGER","A foreign key to the concept in the concept table for the lower-level concept that forms the descendant in the relationship.","concept_ancestor","cdm"
|
||||
"359","min_levels_of_separation","Yes","INTEGER","The minimum separation in number of levels of hierarchy between ancestor and descendant concepts. This is an attribute that is used to simplify hierarchic analysis.","concept_ancestor","cdm"
|
||||
"360","max_levels_of_separation","Yes","INTEGER","The maximum separation in number of levels of hierarchy between ancestor and descendant concepts. This is an attribute that is used to simplify hierarchic analysis.","concept_ancestor","cdm"
|
||||
"361","concept_class_id","Yes","VARCHAR(20)","A unique key for each class.","concept_class","cdm"
|
||||
"362","concept_class_name","Yes","VARCHAR(255)","The name describing the Concept Class, e.g. ""Clinical Finding"", ""Ingredient"", etc.","concept_class","cdm"
|
||||
"363","concept_class_concept_id","Yes","INTEGER","A foreign key that refers to an identifier in the [CONCEPT](https://github.com/OHDSI/CommonDataModel/wiki/CONCEPT) table for the unique Concept Class the record belongs to.","concept_class","cdm"
|
||||
"364","concept_id_1","Yes","INTEGER","A foreign key to a Concept in the [CONCEPT](https://github.com/OHDSI/CommonDataModel/wiki/CONCEPT) table associated with the relationship. Relationships are directional, and this field represents the source concept designation.","concept_relationship","cdm"
|
||||
"365","concept_id_2","Yes","INTEGER","A foreign key to a Concept in the [CONCEPT](https://github.com/OHDSI/CommonDataModel/wiki/CONCEPT) table associated with the relationship. Relationships are directional, and this field represents the destination concept designation.","concept_relationship","cdm"
|
||||
"366","relationship_id","Yes","VARCHAR(20)","A unique identifier to the type or nature of the Relationship as defined in the [RELATIONSHIP](https://github.com/OHDSI/CommonDataModel/wiki/RELATIONSHIP) table.","concept_relationship","cdm"
|
||||
"367","valid_start_date","Yes","DATE","The date when the instance of the Concept Relationship is first recorded.","concept_relationship","cdm"
|
||||
"368","valid_end_date","Yes","DATE","The date when the Concept Relationship became invalid because it was deleted or superseded (updated) by a new relationship. Default value is 31-Dec-2099.","concept_relationship","cdm"
|
||||
"369","invalid_reason","No","VARCHAR(1)","Reason the relationship was invalidated. Possible values are 'D' (deleted), 'U' (replaced with an update) or NULL when valid_end_date has the default value.","concept_relationship","cdm"
|
||||
"370","concept_id","Yes","INTEGER","A foreign key to the Concept in the CONCEPT table.","concept_synonym","cdm"
|
||||
"371","concept_synonym_name","Yes","VARCHAR(1000)","The alternative name for the Concept.","concept_synonym","cdm"
|
||||
"372","language_concept_id","Yes","INTEGER","A foreign key to a Concept representing the language.","concept_synonym","cdm"
|
||||
"373","domain_id","Yes","VARCHAR(20)","A unique key for each domain.","domain","cdm"
|
||||
"374","domain_name","Yes","VARCHAR(255)","The name describing the Domain, e.g. ""Condition"", ""Procedure"", ""Measurement"" etc.","domain","cdm"
|
||||
"375","domain_concept_id","Yes","INTEGER","A foreign key that refers to an identifier in the [CONCEPT](https://github.com/OHDSI/CommonDataModel/wiki/CONCEPT) table for the unique Domain Concept the Domain record belongs to.","domain","cdm"
|
||||
"376","drug_concept_id","Yes","INTEGER","A foreign key to the Concept in the CONCEPT table representing the identifier for Branded Drug or Clinical Drug Concept.","drug_strength","cdm"
|
||||
"377","ingredient_concept_id","Yes","INTEGER","A foreign key to the Concept in the CONCEPT table, representing the identifier for drug Ingredient Concept contained within the drug product.","drug_strength","cdm"
|
||||
"378","amount_value","No","FLOAT","The numeric value associated with the amount of active ingredient contained within the product.","drug_strength","cdm"
|
||||
"379","amount_unit_concept_id","No","INTEGER","A foreign key to the Concept in the CONCEPT table representing the identifier for the Unit for the absolute amount of active ingredient.","drug_strength","cdm"
|
||||
"380","numerator_value","No","FLOAT","The numeric value associated with the concentration of the active ingredient contained in the product","drug_strength","cdm"
|
||||
"381","numerator_unit_concept_id","No","INTEGER","A foreign key to the Concept in the CONCEPT table representing the identifier for the numerator Unit for the concentration of active ingredient.","drug_strength","cdm"
|
||||
"382","denominator_value","No","FLOAT","The amount of total liquid (or other divisible product, such as ointment, gel, spray, etc.).","drug_strength","cdm"
|
||||
"383","denominator_unit_concept_id","No","INTEGER","A foreign key to the Concept in the CONCEPT table representing the identifier for the denominator Unit for the concentration of active ingredient.","drug_strength","cdm"
|
||||
"384","box_size","No","INTEGER","The number of units of Clinical of Branded Drug, or Quantified Clinical or Branded Drug contained in a box as dispensed to the patient","drug_strength","cdm"
|
||||
"385","valid_start_date","Yes","DATE","The date when the Concept was first recorded. The default value is 1-Jan-1970.","drug_strength","cdm"
|
||||
"386","valid_end_date","Yes","DATE","The date when the concept became invalid because it was deleted or superseded (updated) by a new Concept. The default value is 31-Dec-2099.","drug_strength","cdm"
|
||||
"387","invalid_reason","No","VARCHAR(1)","Reason the concept was invalidated. Possible values are 'D' (deleted), 'U' (replaced with an update) or NULL when valid_end_date has the default value.","drug_strength","cdm"
|
||||
"388","relationship_id","Yes","VARCHAR(20)","The type of relationship captured by the relationship record.","relationship","cdm"
|
||||
"389","relationship_name","Yes","VARCHAR(255)","The text that describes the relationship type.","relationship","cdm"
|
||||
"390","is_hierarchical","Yes","VARCHAR(1)","Defines whether a relationship defines concepts into classes or hierarchies. Values are 1 for hierarchical relationship or 0 if not.","relationship","cdm"
|
||||
"391","defines_ancestry","Yes","VARCHAR(1)","Defines whether a hierarchical relationship contributes to the concept_ancestor table. These are subsets of the hierarchical relationships. Valid values are 1 or 0.","relationship","cdm"
|
||||
"392","reverse_relationship_id","Yes","VARCHAR(20)","The identifier for the relationship used to define the reverse relationship between two concepts.","relationship","cdm"
|
||||
"393","relationship_concept_id","Yes","INTEGER","A foreign key that refers to an identifier in the CONCEPT table for the unique relationship concept.","relationship","cdm"
|
||||
"394","source_code","Yes","VARCHAR(50)","The source code being translated into a Standard Concept.","source_to_concept_map","cdm"
|
||||
"395","source_concept_id","Yes","INTEGER","A foreign key to the Source Concept that is being translated into a Standard Concept.","source_to_concept_map","cdm"
|
||||
"396","source_vocabulary_id","Yes","VARCHAR(20)","A foreign key to the VOCABULARY table defining the vocabulary of the source code that is being translated to a Standard Concept.","source_to_concept_map","cdm"
|
||||
"397","source_code_description","No","VARCHAR(255)","An optional description for the source code. This is included as a convenience to compare the description of the source code to the name of the concept.","source_to_concept_map","cdm"
|
||||
"398","target_concept_id","Yes","INTEGER","A foreign key to the target Concept to which the source code is being mapped.","source_to_concept_map","cdm"
|
||||
"399","target_vocabulary_id","Yes","VARCHAR(20)","A foreign key to the VOCABULARY table defining the vocabulary of the target Concept.","source_to_concept_map","cdm"
|
||||
"400","valid_start_date","Yes","DATE","The date when the mapping instance was first recorded.","source_to_concept_map","cdm"
|
||||
"401","valid_end_date","Yes","DATE","The date when the mapping instance became invalid because it was deleted or superseded (updated) by a new relationship. Default value is 31-Dec-2099.","source_to_concept_map","cdm"
|
||||
"402","invalid_reason","No","VARCHAR(1)","Reason the mapping instance was invalidated. Possible values are D (deleted), U (replaced with an update) or NULL when valid_end_date has the default value.","source_to_concept_map","cdm"
|
||||
"403","vocabulary_id","Yes","VARCHAR(20)","A unique identifier for each Vocabulary, such as ICD9CM, SNOMED, Visit.","vocabulary","cdm"
|
||||
"404","vocabulary_name","Yes","VARCHAR(255)","The name describing the vocabulary, for example ""International Classification of Diseases, Ninth Revision, Clinical Modification, Volume 1 and 2 (NCHS)"" etc.","vocabulary","cdm"
|
||||
"405","vocabulary_reference","Yes","VARCHAR(255)","External reference to documentation or available download of the about the vocabulary.","vocabulary","cdm"
|
||||
"406","vocabulary_version","No","VARCHAR(255)","Version of the Vocabulary as indicated in the source.","vocabulary","cdm"
|
||||
"407","vocabulary_concept_id","Yes","INTEGER","A foreign key that refers to a standard concept identifier in the CONCEPT table for the Vocabulary the VOCABULARY record belongs to.","vocabulary","cdm"
|
||||
|
File diff suppressed because it is too large
Load Diff
|
|
@ -2,7 +2,7 @@
|
|||
# Copyright 2014 Observational Health Data Sciences and Informatics
|
||||
#
|
||||
#
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# Licensed under the Apache License, Version 2.0 (the "License")
|
||||
# you may not use this file except in compliance with the License.
|
||||
# You may obtain a copy of the License at
|
||||
#
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
|
||||
oracle script to create foreign key constraints within OMOP common data model, version 5.3.0
|
||||
|
||||
last revised: 15-November-2017
|
||||
last revised: 14-June-2018
|
||||
|
||||
author: Patrick Ryan, Clair Blacketer
|
||||
|
||||
|
|
@ -80,12 +80,16 @@ ALTER TABLE relationship ADD CONSTRAINT fpk_relationship_reverse FOREIGN KEY (re
|
|||
|
||||
ALTER TABLE concept_synonym ADD CONSTRAINT fpk_concept_synonym_concept FOREIGN KEY (concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE concept_synonym ADD CONSTRAINT fpk_concept_synonym_language FOREIGN KEY (language_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE concept_ancestor ADD CONSTRAINT fpk_concept_ancestor_concept_1 FOREIGN KEY (ancestor_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE concept_ancestor ADD CONSTRAINT fpk_concept_ancestor_concept_2 FOREIGN KEY (descendant_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_v_1 FOREIGN KEY (source_vocabulary_id) REFERENCES vocabulary (vocabulary_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_concept_id FOREIGN KEY (source_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_v_2 FOREIGN KEY (target_vocabulary_id) REFERENCES vocabulary (vocabulary_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_c_1 FOREIGN KEY (target_concept_id) REFERENCES concept (concept_id);
|
||||
|
|
@ -102,6 +106,10 @@ ALTER TABLE drug_strength ADD CONSTRAINT fpk_drug_strength_unit_3 FOREIGN KEY (d
|
|||
|
||||
ALTER TABLE cohort_definition ADD CONSTRAINT fpk_cohort_definition_concept FOREIGN KEY (definition_type_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE cohort_definition ADD CONSTRAINT fpk_cohort_subject_concept FOREIGN KEY (subject_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE attribute_definition ADD CONSTRAINT fpk_attribute_type_concept FOREIGN KEY (attribute_type_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
|
||||
/**************************
|
||||
|
||||
|
|
@ -184,13 +192,13 @@ ALTER TABLE visit_occurrence ADD CONSTRAINT fpk_visit_preceding FOREIGN KEY (pre
|
|||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_person FOREIGN KEY (person_id) REFERENCES person (person_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_type_concept FOREIGN KEY (visit_type_concept_id) REFERENCES concept (concept_id);
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_type_concept FOREIGN KEY (visit_detail_type_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_provider FOREIGN KEY (provider_id) REFERENCES provider (provider_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_care_site FOREIGN KEY (care_site_id) REFERENCES care_site (care_site_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_concept_s FOREIGN KEY (visit_source_concept_id) REFERENCES concept (concept_id);
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_concept_s FOREIGN KEY (visit_detail_source_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_admitting_s FOREIGN KEY (admitting_source_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
|
|
@ -375,7 +383,7 @@ Standardized derived elements
|
|||
************************/
|
||||
|
||||
|
||||
ALTER TABLE cohort ADD CONSTRAINT fpk_cohort_definition FOREIGN KEY (cohort_definition_id) REFERENCES cohort_definition (cohort_definition_id);
|
||||
--ALTER TABLE cohort ADD CONSTRAINT fpk_cohort_definition FOREIGN KEY (cohort_definition_id) REFERENCES cohort_definition (cohort_definition_id);
|
||||
|
||||
|
||||
ALTER TABLE cohort_attribute ADD CONSTRAINT fpk_ca_cohort_definition FOREIGN KEY (cohort_definition_id) REFERENCES cohort_definition (cohort_definition_id);
|
||||
|
|
|
|||
|
|
@ -2,7 +2,7 @@
|
|||
# Copyright 2017-11 Observational Health Data Sciences and Informatics
|
||||
#
|
||||
#
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# Licensed under the Apache License, Version 2.0 (the "License")
|
||||
# you may not use this file except in compliance with the License.
|
||||
# You may obtain a copy of the License at
|
||||
#
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
|
||||
oracle script to create OMOP common data model version 5.3
|
||||
|
||||
last revised: 6-Nov-2017
|
||||
last revised: 14-June-2018
|
||||
|
||||
Authors: Patrick Ryan, Christian Reich, Clair Blacketer
|
||||
|
||||
|
|
@ -62,7 +62,7 @@ CREATE TABLE vocabulary (
|
|||
vocabulary_id VARCHAR(20) NOT NULL,
|
||||
vocabulary_name VARCHAR(255) NOT NULL,
|
||||
vocabulary_reference VARCHAR(255) NOT NULL,
|
||||
vocabulary_version VARCHAR(255) NULL,
|
||||
vocabulary_version VARCHAR(255) NOT NULL,
|
||||
vocabulary_concept_id INTEGER NOT NULL
|
||||
)
|
||||
;
|
||||
|
|
@ -210,7 +210,7 @@ CREATE TABLE metadata
|
|||
value_as_string CLOB NULL ,
|
||||
value_as_concept_id INTEGER NULL ,
|
||||
metadata_date DATE NULL ,
|
||||
metadata_datetime TIMESTAMP NULL
|
||||
metadata_datetime DATETIME2 NULL
|
||||
)
|
||||
;
|
||||
|
||||
|
|
@ -229,7 +229,7 @@ CREATE TABLE person
|
|||
year_of_birth INTEGER NOT NULL ,
|
||||
month_of_birth INTEGER NULL,
|
||||
day_of_birth INTEGER NULL,
|
||||
birth_datetime TIMESTAMP NULL,
|
||||
birth_datetime DATETIME2 NULL,
|
||||
race_concept_id INTEGER NOT NULL,
|
||||
ethnicity_concept_id INTEGER NOT NULL,
|
||||
location_id INTEGER NULL,
|
||||
|
|
@ -266,7 +266,7 @@ CREATE TABLE specimen
|
|||
specimen_concept_id INTEGER NOT NULL ,
|
||||
specimen_type_concept_id INTEGER NOT NULL ,
|
||||
specimen_date DATE NOT NULL ,
|
||||
specimen_datetime TIMESTAMP NULL ,
|
||||
specimen_datetime DATETIME2 NULL ,
|
||||
quantity FLOAT NULL ,
|
||||
unit_concept_id INTEGER NULL ,
|
||||
anatomic_site_concept_id INTEGER NULL ,
|
||||
|
|
@ -285,7 +285,7 @@ CREATE TABLE death
|
|||
(
|
||||
person_id INTEGER NOT NULL ,
|
||||
death_date DATE NOT NULL ,
|
||||
death_datetime TIMESTAMP NULL ,
|
||||
death_datetime DATETIME2 NULL ,
|
||||
death_type_concept_id INTEGER NOT NULL ,
|
||||
cause_concept_id INTEGER NULL ,
|
||||
cause_source_value VARCHAR(50) NULL,
|
||||
|
|
@ -301,9 +301,9 @@ CREATE TABLE visit_occurrence
|
|||
person_id INTEGER NOT NULL ,
|
||||
visit_concept_id INTEGER NOT NULL ,
|
||||
visit_start_date DATE NOT NULL ,
|
||||
visit_start_datetime TIMESTAMP NULL ,
|
||||
visit_start_datetime DATETIME2 NULL ,
|
||||
visit_end_date DATE NOT NULL ,
|
||||
visit_end_datetime TIMESTAMP NULL ,
|
||||
visit_end_datetime DATETIME2 NULL ,
|
||||
visit_type_concept_id INTEGER NOT NULL ,
|
||||
provider_id INTEGER NULL,
|
||||
care_site_id INTEGER NULL,
|
||||
|
|
@ -324,18 +324,18 @@ CREATE TABLE visit_detail
|
|||
visit_detail_id INTEGER NOT NULL ,
|
||||
person_id INTEGER NOT NULL ,
|
||||
visit_detail_concept_id INTEGER NOT NULL ,
|
||||
visit_start_date DATE NOT NULL ,
|
||||
visit_start_datetime TIMESTAMP NULL ,
|
||||
visit_end_date DATE NOT NULL ,
|
||||
visit_end_datetime TIMESTAMP NULL ,
|
||||
visit_type_concept_id INTEGER NOT NULL ,
|
||||
visit_detail_start_date DATE NOT NULL ,
|
||||
visit_detail_start_datetime DATETIME2 NULL ,
|
||||
visit_detail_end_date DATE NOT NULL ,
|
||||
visit_detail_end_datetime DATETIME2 NULL ,
|
||||
visit_detail_type_concept_id INTEGER NOT NULL ,
|
||||
provider_id INTEGER NULL ,
|
||||
care_site_id INTEGER NULL ,
|
||||
admitting_source_concept_id INTEGER NULL ,
|
||||
discharge_to_concept_id INTEGER NULL ,
|
||||
preceding_visit_detail_id INTEGER NULL ,
|
||||
visit_source_value VARCHAR(50) NULL ,
|
||||
visit_source_concept_id INTEGER NULL ,
|
||||
visit_detail_source_value VARCHAR(50) NULL ,
|
||||
visit_detail_source_concept_id INTEGER NULL ,
|
||||
admitting_source_value VARCHAR(50) NULL ,
|
||||
discharge_to_source_value VARCHAR(50) NULL ,
|
||||
visit_detail_parent_id INTEGER NULL ,
|
||||
|
|
@ -351,7 +351,7 @@ CREATE TABLE procedure_occurrence
|
|||
person_id INTEGER NOT NULL ,
|
||||
procedure_concept_id INTEGER NOT NULL ,
|
||||
procedure_date DATE NOT NULL ,
|
||||
procedure_datetime TIMESTAMP NULL ,
|
||||
procedure_datetime DATETIME2 NULL ,
|
||||
procedure_type_concept_id INTEGER NOT NULL ,
|
||||
modifier_concept_id INTEGER NULL ,
|
||||
quantity INTEGER NULL ,
|
||||
|
|
@ -372,9 +372,9 @@ CREATE TABLE drug_exposure
|
|||
person_id INTEGER NOT NULL ,
|
||||
drug_concept_id INTEGER NOT NULL ,
|
||||
drug_exposure_start_date DATE NOT NULL ,
|
||||
drug_exposure_start_datetime TIMESTAMP NULL ,
|
||||
drug_exposure_start_datetime DATETIME2 NULL ,
|
||||
drug_exposure_end_date DATE NOT NULL ,
|
||||
drug_exposure_end_datetime TIMESTAMP NULL ,
|
||||
drug_exposure_end_datetime DATETIME2 NULL ,
|
||||
verbatim_end_date DATE NULL ,
|
||||
drug_type_concept_id INTEGER NOT NULL ,
|
||||
stop_reason VARCHAR(20) NULL ,
|
||||
|
|
@ -402,9 +402,9 @@ CREATE TABLE device_exposure
|
|||
person_id INTEGER NOT NULL ,
|
||||
device_concept_id INTEGER NOT NULL ,
|
||||
device_exposure_start_date DATE NOT NULL ,
|
||||
device_exposure_start_datetime TIMESTAMP NULL ,
|
||||
device_exposure_start_datetime DATETIME2 NULL ,
|
||||
device_exposure_end_date DATE NULL ,
|
||||
device_exposure_end_datetime TIMESTAMP NULL ,
|
||||
device_exposure_end_datetime DATETIME2 NULL ,
|
||||
device_type_concept_id INTEGER NOT NULL ,
|
||||
unique_device_id VARCHAR(50) NULL ,
|
||||
quantity INTEGER NULL ,
|
||||
|
|
@ -424,9 +424,9 @@ CREATE TABLE condition_occurrence
|
|||
person_id INTEGER NOT NULL ,
|
||||
condition_concept_id INTEGER NOT NULL ,
|
||||
condition_start_date DATE NOT NULL ,
|
||||
condition_start_datetime TIMESTAMP NULL ,
|
||||
condition_start_datetime DATETIME2 NULL ,
|
||||
condition_end_date DATE NULL ,
|
||||
condition_end_datetime TIMESTAMP NULL ,
|
||||
condition_end_datetime DATETIME2 NULL ,
|
||||
condition_type_concept_id INTEGER NOT NULL ,
|
||||
stop_reason VARCHAR(20) NULL ,
|
||||
provider_id INTEGER NULL ,
|
||||
|
|
@ -447,7 +447,7 @@ CREATE TABLE measurement
|
|||
person_id INTEGER NOT NULL ,
|
||||
measurement_concept_id INTEGER NOT NULL ,
|
||||
measurement_date DATE NOT NULL ,
|
||||
measurement_datetime TIMESTAMP NULL ,
|
||||
measurement_datetime DATETIME2 NULL ,
|
||||
measurement_time VARCHAR(10) NULL,
|
||||
measurement_type_concept_id INTEGER NOT NULL ,
|
||||
operator_concept_id INTEGER NULL ,
|
||||
|
|
@ -473,7 +473,7 @@ CREATE TABLE note
|
|||
note_id INTEGER NOT NULL ,
|
||||
person_id INTEGER NOT NULL ,
|
||||
note_date DATE NOT NULL ,
|
||||
note_datetime TIMESTAMP NULL ,
|
||||
note_datetime DATETIME2 NULL ,
|
||||
note_type_concept_id INTEGER NOT NULL ,
|
||||
note_class_concept_id INTEGER NOT NULL ,
|
||||
note_title VARCHAR(250) NULL ,
|
||||
|
|
@ -501,7 +501,7 @@ CREATE TABLE note_nlp
|
|||
note_nlp_source_concept_id INTEGER NULL ,
|
||||
nlp_system VARCHAR(250) NULL ,
|
||||
nlp_date DATE NOT NULL ,
|
||||
nlp_datetime TIMESTAMP NULL ,
|
||||
nlp_datetime DATETIME2 NULL ,
|
||||
term_exists VARCHAR(1) NULL ,
|
||||
term_temporal VARCHAR(50) NULL ,
|
||||
term_modifiers VARCHAR(2000) NULL
|
||||
|
|
@ -516,7 +516,7 @@ CREATE TABLE observation
|
|||
person_id INTEGER NOT NULL ,
|
||||
observation_concept_id INTEGER NOT NULL ,
|
||||
observation_date DATE NOT NULL ,
|
||||
observation_datetime TIMESTAMP NULL ,
|
||||
observation_datetime DATETIME2 NULL ,
|
||||
observation_type_concept_id INTEGER NOT NULL ,
|
||||
value_as_number FLOAT NULL ,
|
||||
value_as_string VARCHAR(60) NULL ,
|
||||
|
|
@ -650,7 +650,7 @@ CREATE TABLE cost
|
|||
payer_plan_period_id INTEGER NULL ,
|
||||
amount_allowed FLOAT NULL ,
|
||||
revenue_code_concept_id INTEGER NULL ,
|
||||
revenue_code_source_value VARCHAR(50) NULL,
|
||||
reveue_code_source_value VARCHAR(50) NULL,
|
||||
drg_concept_id INTEGER NULL,
|
||||
drg_source_value VARCHAR(3) NULL
|
||||
)
|
||||
|
|
|
|||
|
|
@ -2,7 +2,7 @@
|
|||
# Copyright 2014 Observational Health Data Sciences and Informatics
|
||||
#
|
||||
#
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# Licensed under the Apache License, Version 2.0 (the "License")
|
||||
# you may not use this file except in compliance with the License.
|
||||
# You may obtain a copy of the License at
|
||||
#
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
|
||||
pdw script to create foreign key constraints within OMOP common data model, version 5.3.0
|
||||
|
||||
last revised: 15-November-2017
|
||||
last revised: 14-June-2018
|
||||
|
||||
author: Patrick Ryan, Clair Blacketer
|
||||
|
||||
|
|
@ -80,12 +80,16 @@ ALTER TABLE relationship ADD CONSTRAINT fpk_relationship_reverse FOREIGN KEY (re
|
|||
|
||||
ALTER TABLE concept_synonym ADD CONSTRAINT fpk_concept_synonym_concept FOREIGN KEY (concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE concept_synonym ADD CONSTRAINT fpk_concept_synonym_language FOREIGN KEY (language_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE concept_ancestor ADD CONSTRAINT fpk_concept_ancestor_concept_1 FOREIGN KEY (ancestor_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE concept_ancestor ADD CONSTRAINT fpk_concept_ancestor_concept_2 FOREIGN KEY (descendant_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_v_1 FOREIGN KEY (source_vocabulary_id) REFERENCES vocabulary (vocabulary_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_concept_id FOREIGN KEY (source_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_v_2 FOREIGN KEY (target_vocabulary_id) REFERENCES vocabulary (vocabulary_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_c_1 FOREIGN KEY (target_concept_id) REFERENCES concept (concept_id);
|
||||
|
|
@ -102,6 +106,10 @@ ALTER TABLE drug_strength ADD CONSTRAINT fpk_drug_strength_unit_3 FOREIGN KEY (d
|
|||
|
||||
ALTER TABLE cohort_definition ADD CONSTRAINT fpk_cohort_definition_concept FOREIGN KEY (definition_type_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE cohort_definition ADD CONSTRAINT fpk_cohort_subject_concept FOREIGN KEY (subject_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE attribute_definition ADD CONSTRAINT fpk_attribute_type_concept FOREIGN KEY (attribute_type_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
|
||||
/**************************
|
||||
|
||||
|
|
@ -184,13 +192,13 @@ ALTER TABLE visit_occurrence ADD CONSTRAINT fpk_visit_preceding FOREIGN KEY (pre
|
|||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_person FOREIGN KEY (person_id) REFERENCES person (person_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_type_concept FOREIGN KEY (visit_type_concept_id) REFERENCES concept (concept_id);
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_type_concept FOREIGN KEY (visit_detail_type_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_provider FOREIGN KEY (provider_id) REFERENCES provider (provider_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_care_site FOREIGN KEY (care_site_id) REFERENCES care_site (care_site_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_concept_s FOREIGN KEY (visit_source_concept_id) REFERENCES concept (concept_id);
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_concept_s FOREIGN KEY (visit_detail_source_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_admitting_s FOREIGN KEY (admitting_source_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
|
|
@ -375,7 +383,7 @@ Standardized derived elements
|
|||
************************/
|
||||
|
||||
|
||||
ALTER TABLE cohort ADD CONSTRAINT fpk_cohort_definition FOREIGN KEY (cohort_definition_id) REFERENCES cohort_definition (cohort_definition_id);
|
||||
--ALTER TABLE cohort ADD CONSTRAINT fpk_cohort_definition FOREIGN KEY (cohort_definition_id) REFERENCES cohort_definition (cohort_definition_id);
|
||||
|
||||
|
||||
ALTER TABLE cohort_attribute ADD CONSTRAINT fpk_ca_cohort_definition FOREIGN KEY (cohort_definition_id) REFERENCES cohort_definition (cohort_definition_id);
|
||||
|
|
|
|||
|
|
@ -2,7 +2,7 @@
|
|||
# Copyright 2017-11 Observational Health Data Sciences and Informatics
|
||||
#
|
||||
#
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# Licensed under the Apache License, Version 2.0 (the "License")
|
||||
# you may not use this file except in compliance with the License.
|
||||
# You may obtain a copy of the License at
|
||||
#
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
|
||||
pdw script to create OMOP common data model version 5.3
|
||||
|
||||
last revised: 6-Nov-2017
|
||||
last revised: 14-June-2018
|
||||
|
||||
Authors: Patrick Ryan, Christian Reich, Clair Blacketer
|
||||
|
||||
|
|
@ -60,7 +60,7 @@ WITH (DISTRIBUTION = REPLICATE);
|
|||
IF XACT_STATE() = 1 COMMIT; CREATE TABLE vocabulary (vocabulary_id VARCHAR(20) NOT NULL,
|
||||
vocabulary_name VARCHAR(255) NOT NULL,
|
||||
vocabulary_reference VARCHAR(255) NOT NULL,
|
||||
vocabulary_version VARCHAR(255) NULL,
|
||||
vocabulary_version VARCHAR(255) NOT NULL,
|
||||
vocabulary_concept_id INTEGER NOT NULL
|
||||
)
|
||||
WITH (DISTRIBUTION = REPLICATE);
|
||||
|
|
@ -196,7 +196,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE metadata
|
|||
value_as_string VARCHAR(1000) NULL ,
|
||||
value_as_concept_id INTEGER NULL ,
|
||||
metadata_date DATE NULL ,
|
||||
metadata_datetime DATETIME NULL
|
||||
metadata_datetime DATETIME2 NULL
|
||||
)
|
||||
WITH (DISTRIBUTION = REPLICATE);
|
||||
|
||||
|
|
@ -214,7 +214,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE person
|
|||
year_of_birth INTEGER NOT NULL ,
|
||||
month_of_birth INTEGER NULL,
|
||||
day_of_birth INTEGER NULL,
|
||||
birth_datetime DATETIME NULL,
|
||||
birth_datetime DATETIME2 NULL,
|
||||
race_concept_id INTEGER NOT NULL,
|
||||
ethnicity_concept_id INTEGER NOT NULL,
|
||||
location_id INTEGER NULL,
|
||||
|
|
@ -249,7 +249,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE specimen
|
|||
specimen_concept_id INTEGER NOT NULL ,
|
||||
specimen_type_concept_id INTEGER NOT NULL ,
|
||||
specimen_date DATE NOT NULL ,
|
||||
specimen_datetime DATETIME NULL ,
|
||||
specimen_datetime DATETIME2 NULL ,
|
||||
quantity FLOAT NULL ,
|
||||
unit_concept_id INTEGER NULL ,
|
||||
anatomic_site_concept_id INTEGER NULL ,
|
||||
|
|
@ -267,7 +267,7 @@ WITH (DISTRIBUTION = HASH(person_id));
|
|||
IF XACT_STATE() = 1 COMMIT; CREATE TABLE death
|
||||
(person_id INTEGER NOT NULL ,
|
||||
death_date DATE NOT NULL ,
|
||||
death_datetime DATETIME NULL ,
|
||||
death_datetime DATETIME2 NULL ,
|
||||
death_type_concept_id INTEGER NOT NULL ,
|
||||
cause_concept_id INTEGER NULL ,
|
||||
cause_source_value VARCHAR(50) NULL,
|
||||
|
|
@ -282,9 +282,9 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE visit_occurrence
|
|||
person_id INTEGER NOT NULL ,
|
||||
visit_concept_id INTEGER NOT NULL ,
|
||||
visit_start_date DATE NOT NULL ,
|
||||
visit_start_datetime DATETIME NULL ,
|
||||
visit_start_datetime DATETIME2 NULL ,
|
||||
visit_end_date DATE NOT NULL ,
|
||||
visit_end_datetime DATETIME NULL ,
|
||||
visit_end_datetime DATETIME2 NULL ,
|
||||
visit_type_concept_id INTEGER NOT NULL ,
|
||||
provider_id INTEGER NULL,
|
||||
care_site_id INTEGER NULL,
|
||||
|
|
@ -304,18 +304,18 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE visit_detail
|
|||
(visit_detail_id INTEGER NOT NULL ,
|
||||
person_id INTEGER NOT NULL ,
|
||||
visit_detail_concept_id INTEGER NOT NULL ,
|
||||
visit_start_date DATE NOT NULL ,
|
||||
visit_start_datetime DATETIME NULL ,
|
||||
visit_end_date DATE NOT NULL ,
|
||||
visit_end_datetime DATETIME NULL ,
|
||||
visit_type_concept_id INTEGER NOT NULL ,
|
||||
visit_detail_start_date DATE NOT NULL ,
|
||||
visit_detail_start_datetime DATETIME2 NULL ,
|
||||
visit_detail_end_date DATE NOT NULL ,
|
||||
visit_detail_end_datetime DATETIME2 NULL ,
|
||||
visit_detail_type_concept_id INTEGER NOT NULL ,
|
||||
provider_id INTEGER NULL ,
|
||||
care_site_id INTEGER NULL ,
|
||||
admitting_source_concept_id INTEGER NULL ,
|
||||
discharge_to_concept_id INTEGER NULL ,
|
||||
preceding_visit_detail_id INTEGER NULL ,
|
||||
visit_source_value VARCHAR(50) NULL ,
|
||||
visit_source_concept_id INTEGER NULL ,
|
||||
visit_detail_source_value VARCHAR(50) NULL ,
|
||||
visit_detail_source_concept_id INTEGER NULL ,
|
||||
admitting_source_value VARCHAR(50) NULL ,
|
||||
discharge_to_source_value VARCHAR(50) NULL ,
|
||||
visit_detail_parent_id INTEGER NULL ,
|
||||
|
|
@ -330,7 +330,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE procedure_occurrence
|
|||
person_id INTEGER NOT NULL ,
|
||||
procedure_concept_id INTEGER NOT NULL ,
|
||||
procedure_date DATE NOT NULL ,
|
||||
procedure_datetime DATETIME NULL ,
|
||||
procedure_datetime DATETIME2 NULL ,
|
||||
procedure_type_concept_id INTEGER NOT NULL ,
|
||||
modifier_concept_id INTEGER NULL ,
|
||||
quantity INTEGER NULL ,
|
||||
|
|
@ -350,9 +350,9 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE drug_exposure
|
|||
person_id INTEGER NOT NULL ,
|
||||
drug_concept_id INTEGER NOT NULL ,
|
||||
drug_exposure_start_date DATE NOT NULL ,
|
||||
drug_exposure_start_datetime DATETIME NULL ,
|
||||
drug_exposure_start_datetime DATETIME2 NULL ,
|
||||
drug_exposure_end_date DATE NOT NULL ,
|
||||
drug_exposure_end_datetime DATETIME NULL ,
|
||||
drug_exposure_end_datetime DATETIME2 NULL ,
|
||||
verbatim_end_date DATE NULL ,
|
||||
drug_type_concept_id INTEGER NOT NULL ,
|
||||
stop_reason VARCHAR(20) NULL ,
|
||||
|
|
@ -379,9 +379,9 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE device_exposure
|
|||
person_id INTEGER NOT NULL ,
|
||||
device_concept_id INTEGER NOT NULL ,
|
||||
device_exposure_start_date DATE NOT NULL ,
|
||||
device_exposure_start_datetime DATETIME NULL ,
|
||||
device_exposure_start_datetime DATETIME2 NULL ,
|
||||
device_exposure_end_date DATE NULL ,
|
||||
device_exposure_end_datetime DATETIME NULL ,
|
||||
device_exposure_end_datetime DATETIME2 NULL ,
|
||||
device_type_concept_id INTEGER NOT NULL ,
|
||||
unique_device_id VARCHAR(50) NULL ,
|
||||
quantity INTEGER NULL ,
|
||||
|
|
@ -400,9 +400,9 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE condition_occurrence
|
|||
person_id INTEGER NOT NULL ,
|
||||
condition_concept_id INTEGER NOT NULL ,
|
||||
condition_start_date DATE NOT NULL ,
|
||||
condition_start_datetime DATETIME NULL ,
|
||||
condition_start_datetime DATETIME2 NULL ,
|
||||
condition_end_date DATE NULL ,
|
||||
condition_end_datetime DATETIME NULL ,
|
||||
condition_end_datetime DATETIME2 NULL ,
|
||||
condition_type_concept_id INTEGER NOT NULL ,
|
||||
stop_reason VARCHAR(20) NULL ,
|
||||
provider_id INTEGER NULL ,
|
||||
|
|
@ -422,7 +422,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE measurement
|
|||
person_id INTEGER NOT NULL ,
|
||||
measurement_concept_id INTEGER NOT NULL ,
|
||||
measurement_date DATE NOT NULL ,
|
||||
measurement_datetime DATETIME NULL ,
|
||||
measurement_datetime DATETIME2 NULL ,
|
||||
measurement_time VARCHAR(10) NULL,
|
||||
measurement_type_concept_id INTEGER NOT NULL ,
|
||||
operator_concept_id INTEGER NULL ,
|
||||
|
|
@ -447,7 +447,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE note
|
|||
(note_id INTEGER NOT NULL ,
|
||||
person_id INTEGER NOT NULL ,
|
||||
note_date DATE NOT NULL ,
|
||||
note_datetime DATETIME NULL ,
|
||||
note_datetime DATETIME2 NULL ,
|
||||
note_type_concept_id INTEGER NOT NULL ,
|
||||
note_class_concept_id INTEGER NOT NULL ,
|
||||
note_title VARCHAR(250) NULL ,
|
||||
|
|
@ -474,7 +474,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE note_nlp
|
|||
note_nlp_source_concept_id INTEGER NULL ,
|
||||
nlp_system VARCHAR(250) NULL ,
|
||||
nlp_date DATE NOT NULL ,
|
||||
nlp_datetime DATETIME NULL ,
|
||||
nlp_datetime DATETIME2 NULL ,
|
||||
term_exists VARCHAR(1) NULL ,
|
||||
term_temporal VARCHAR(50) NULL ,
|
||||
term_modifiers VARCHAR(2000) NULL
|
||||
|
|
@ -488,7 +488,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE observation
|
|||
person_id INTEGER NOT NULL ,
|
||||
observation_concept_id INTEGER NOT NULL ,
|
||||
observation_date DATE NOT NULL ,
|
||||
observation_datetime DATETIME NULL ,
|
||||
observation_datetime DATETIME2 NULL ,
|
||||
observation_type_concept_id INTEGER NOT NULL ,
|
||||
value_as_number FLOAT NULL ,
|
||||
value_as_string VARCHAR(60) NULL ,
|
||||
|
|
@ -616,7 +616,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE cost
|
|||
payer_plan_period_id INTEGER NULL ,
|
||||
amount_allowed FLOAT NULL ,
|
||||
revenue_code_concept_id INTEGER NULL ,
|
||||
revenue_code_source_value VARCHAR(50) NULL,
|
||||
reveue_code_source_value VARCHAR(50) NULL,
|
||||
drg_concept_id INTEGER NULL,
|
||||
drg_source_value VARCHAR(3) NULL
|
||||
)
|
||||
|
|
|
|||
|
|
@ -2,7 +2,7 @@
|
|||
# Copyright 2014 Observational Health Data Sciences and Informatics
|
||||
#
|
||||
#
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# Licensed under the Apache License, Version 2.0 (the "License")
|
||||
# you may not use this file except in compliance with the License.
|
||||
# You may obtain a copy of the License at
|
||||
#
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
|
||||
postgresql script to create foreign key constraints within OMOP common data model, version 5.3.0
|
||||
|
||||
last revised: 15-November-2017
|
||||
last revised: 14-June-2018
|
||||
|
||||
author: Patrick Ryan, Clair Blacketer
|
||||
|
||||
|
|
@ -80,12 +80,16 @@ ALTER TABLE relationship ADD CONSTRAINT fpk_relationship_reverse FOREIGN KEY (re
|
|||
|
||||
ALTER TABLE concept_synonym ADD CONSTRAINT fpk_concept_synonym_concept FOREIGN KEY (concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE concept_synonym ADD CONSTRAINT fpk_concept_synonym_language FOREIGN KEY (language_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE concept_ancestor ADD CONSTRAINT fpk_concept_ancestor_concept_1 FOREIGN KEY (ancestor_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE concept_ancestor ADD CONSTRAINT fpk_concept_ancestor_concept_2 FOREIGN KEY (descendant_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_v_1 FOREIGN KEY (source_vocabulary_id) REFERENCES vocabulary (vocabulary_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_concept_id FOREIGN KEY (source_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_v_2 FOREIGN KEY (target_vocabulary_id) REFERENCES vocabulary (vocabulary_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_c_1 FOREIGN KEY (target_concept_id) REFERENCES concept (concept_id);
|
||||
|
|
@ -102,6 +106,10 @@ ALTER TABLE drug_strength ADD CONSTRAINT fpk_drug_strength_unit_3 FOREIGN KEY (d
|
|||
|
||||
ALTER TABLE cohort_definition ADD CONSTRAINT fpk_cohort_definition_concept FOREIGN KEY (definition_type_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE cohort_definition ADD CONSTRAINT fpk_cohort_subject_concept FOREIGN KEY (subject_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE attribute_definition ADD CONSTRAINT fpk_attribute_type_concept FOREIGN KEY (attribute_type_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
|
||||
/**************************
|
||||
|
||||
|
|
@ -184,13 +192,13 @@ ALTER TABLE visit_occurrence ADD CONSTRAINT fpk_visit_preceding FOREIGN KEY (pre
|
|||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_person FOREIGN KEY (person_id) REFERENCES person (person_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_type_concept FOREIGN KEY (visit_type_concept_id) REFERENCES concept (concept_id);
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_type_concept FOREIGN KEY (visit_detail_type_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_provider FOREIGN KEY (provider_id) REFERENCES provider (provider_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_care_site FOREIGN KEY (care_site_id) REFERENCES care_site (care_site_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_concept_s FOREIGN KEY (visit_source_concept_id) REFERENCES concept (concept_id);
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_concept_s FOREIGN KEY (visit_detail_source_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_admitting_s FOREIGN KEY (admitting_source_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
|
|
@ -375,7 +383,7 @@ Standardized derived elements
|
|||
************************/
|
||||
|
||||
|
||||
ALTER TABLE cohort ADD CONSTRAINT fpk_cohort_definition FOREIGN KEY (cohort_definition_id) REFERENCES cohort_definition (cohort_definition_id);
|
||||
--ALTER TABLE cohort ADD CONSTRAINT fpk_cohort_definition FOREIGN KEY (cohort_definition_id) REFERENCES cohort_definition (cohort_definition_id);
|
||||
|
||||
|
||||
ALTER TABLE cohort_attribute ADD CONSTRAINT fpk_ca_cohort_definition FOREIGN KEY (cohort_definition_id) REFERENCES cohort_definition (cohort_definition_id);
|
||||
|
|
|
|||
|
|
@ -2,7 +2,7 @@
|
|||
# Copyright 2017-11 Observational Health Data Sciences and Informatics
|
||||
#
|
||||
#
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# Licensed under the Apache License, Version 2.0 (the "License")
|
||||
# you may not use this file except in compliance with the License.
|
||||
# You may obtain a copy of the License at
|
||||
#
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
|
||||
postgresql script to create OMOP common data model version 5.3
|
||||
|
||||
last revised: 6-Nov-2017
|
||||
last revised: 14-June-2018
|
||||
|
||||
Authors: Patrick Ryan, Christian Reich, Clair Blacketer
|
||||
|
||||
|
|
@ -62,7 +62,7 @@ CREATE TABLE vocabulary (
|
|||
vocabulary_id VARCHAR(20) NOT NULL,
|
||||
vocabulary_name VARCHAR(255) NOT NULL,
|
||||
vocabulary_reference VARCHAR(255) NOT NULL,
|
||||
vocabulary_version VARCHAR(255) NULL,
|
||||
vocabulary_version VARCHAR(255) NOT NULL,
|
||||
vocabulary_concept_id INTEGER NOT NULL
|
||||
)
|
||||
;
|
||||
|
|
@ -324,18 +324,18 @@ CREATE TABLE visit_detail
|
|||
visit_detail_id INTEGER NOT NULL ,
|
||||
person_id INTEGER NOT NULL ,
|
||||
visit_detail_concept_id INTEGER NOT NULL ,
|
||||
visit_start_date DATE NOT NULL ,
|
||||
visit_start_datetime TIMESTAMP NULL ,
|
||||
visit_end_date DATE NOT NULL ,
|
||||
visit_end_datetime TIMESTAMP NULL ,
|
||||
visit_type_concept_id INTEGER NOT NULL ,
|
||||
visit_detail_start_date DATE NOT NULL ,
|
||||
visit_detail_start_datetime TIMESTAMP NULL ,
|
||||
visit_detail_end_date DATE NOT NULL ,
|
||||
visit_detail_end_datetime TIMESTAMP NULL ,
|
||||
visit_detail_type_concept_id INTEGER NOT NULL ,
|
||||
provider_id INTEGER NULL ,
|
||||
care_site_id INTEGER NULL ,
|
||||
admitting_source_concept_id INTEGER NULL ,
|
||||
discharge_to_concept_id INTEGER NULL ,
|
||||
preceding_visit_detail_id INTEGER NULL ,
|
||||
visit_source_value VARCHAR(50) NULL ,
|
||||
visit_source_concept_id INTEGER NULL ,
|
||||
visit_detail_source_value VARCHAR(50) NULL ,
|
||||
visit_detail_source_concept_id INTEGER NULL ,
|
||||
admitting_source_value VARCHAR(50) NULL ,
|
||||
discharge_to_source_value VARCHAR(50) NULL ,
|
||||
visit_detail_parent_id INTEGER NULL ,
|
||||
|
|
@ -650,7 +650,7 @@ CREATE TABLE cost
|
|||
payer_plan_period_id INTEGER NULL ,
|
||||
amount_allowed NUMERIC NULL ,
|
||||
revenue_code_concept_id INTEGER NULL ,
|
||||
revenue_code_source_value VARCHAR(50) NULL,
|
||||
reveue_code_source_value VARCHAR(50) NULL,
|
||||
drg_concept_id INTEGER NULL,
|
||||
drg_source_value VARCHAR(3) NULL
|
||||
)
|
||||
|
|
|
|||
44
README.md
44
README.md
|
|
@ -1,26 +1,34 @@
|
|||
Common Data Model v5.3
|
||||
Common Data Model v5.3.1
|
||||
=================
|
||||
|
||||
See full CDM specification file on our github [wiki](https://github.com/OHDSI/CommonDataModel/wiki) or in the [CDM V5.3 PDF](https://github.com/OHDSI/CommonDataModel/blob/master/OMOP_CDM_v5_3.pdf)
|
||||
See full CDM specification file on our github [wiki](https://github.com/OHDSI/CommonDataModel/wiki) or in the [CDM V5.3.1 PDF](https://github.com/OHDSI/CommonDataModel/blob/master/OMOP_CDM_v5_3_1.pdf)
|
||||
|
||||
|
||||
Release Notes for v5.3
|
||||
Release Notes for v5.3.1
|
||||
=============
|
||||
This version is based on the pull requests and CDM proposals:
|
||||
* [#64](https://github.com/OHDSI/CommonDataModel/pull/64) This removes the datetime fields from OBSERVATION_PERIOD
|
||||
* [#70](https://github.com/OHDSI/CommonDataModel/issues/70) Adds the VISIT_DETAIL table
|
||||
* [#79](https://github.com/OHDSI/CommonDataModel/issues/79) Adds the METADATA table
|
||||
* [#92](https://github.com/OHDSI/CommonDataModel/issues/92) Fixes qualifier typo in PROCEDURE_OCCURRENCE
|
||||
* [#120](https://github.com/OHDSI/CommonDataModel/issues/120) Adds the following fields to PAYER_PLAN_PERIOD:
|
||||
* PAYER_CONCEPT_ID
|
||||
* PAYER_SOURCE_CONCEPT_ID
|
||||
* PLAN_CONCEPT_ID
|
||||
* PLAN_SOURCE_CONCEPT_ID
|
||||
* SPONSOR_CONCEPT_ID
|
||||
* SPONSOR_SOURCE_CONCEPT_ID
|
||||
* STOP_REASON_CONCEPT_ID
|
||||
* STOP_REASON_SOURCE_VALUE
|
||||
* STOP_REASON_SOURCE_CONCEPT_ID
|
||||
|
||||
### This version address the following issues/pull requests:
|
||||
|
||||
* [#183](https://github.com/OHDSI/CommonDataModel/pull/183) Fixes VISIT_DETAIL documentation, 'required' and 'type' columns were switched
|
||||
* [#169](https://github.com/OHDSI/CommonDataModel/pull/183) Data type changes for BigQuery
|
||||
* [#171](https://github.com/OHDSI/CommonDataModel/issues/171) Datetime formats in Sql Server changed to Datetime2
|
||||
* [#173](https://github.com/OHDSI/CommonDataModel/issues/173) Impala reserved words
|
||||
* [#177](https://github.com/OHDSI/CommonDataModel/pull/177) Postgres readme
|
||||
* [#140](https://github.com/OHDSI/CommonDataModel/issues/140), [#144](https://github.com/OHDSI/CommonDataModel/issues/140), [#135](https://github.com/OHDSI/CommonDataModel/issues/140)
|
||||
* Typos in readme and documentation
|
||||
* [#158](https://github.com/OHDSI/CommonDataModel/pull/158) VOCABULARY.VOCABULARY_VERSION no longer a required field
|
||||
* [#157](https://github.com/OHDSI/CommonDataModel/pull/157) Added MEASUREMENT.MEASUREMENT_TIME back to DDL for backwards compatibility
|
||||
* [#147](https://github.com/OHDSI/CommonDataModel/issues/147) PAYER_PLAN_PERIOD.STOP_REASON_SOURCE_VALUE varchar instead of integer
|
||||
* [#120](https://github.com/OHDSI/CommonDataModel/issues/120) PAYER_PLAN_PERIOD documentation
|
||||
* [#160](https://github.com/OHDSI/CommonDataModel/issues/160) Removed errant semicolon in license header
|
||||
* **[#145](https://github.com/OHDSI/CommonDataModel/issues/145) VISIT_DETAIL naming convention**
|
||||
* This is the change with the most potential impact as column names were updated
|
||||
* [#67](https://github.com/OHDSI/CommonDataModel/issues/67) Removed COHORT_DEFINITION_ID foreign key constraint from COHORT table
|
||||
* [#16](https://github.com/OHDSI/CommonDataModel/issues/16) Added additional foreign key constraints that were missing
|
||||
* [#12](https://github.com/OHDSI/CommonDataModel/issues/12) .csv file is now delivered with each version
|
||||
* Additional BigQuery updates for compatibility
|
||||
* A portion of [#112](https://github.com/OHDSI/CommonDataModel/issues/112) was addressed
|
||||
* VISIT_DETAIL and documentation typos
|
||||
|
||||
Additional Updates
|
||||
==================
|
||||
|
|
|
|||
|
|
@ -2,7 +2,7 @@
|
|||
# Copyright 2017-11 Observational Health Data Sciences and Informatics
|
||||
#
|
||||
#
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# Licensed under the Apache License, Version 2.0 (the "License")
|
||||
# you may not use this file except in compliance with the License.
|
||||
# You may obtain a copy of the License at
|
||||
#
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
|
||||
redshift script to create OMOP common data model version 5.3
|
||||
|
||||
last revised: 6-Nov-2017
|
||||
last revised: 14-June-2018
|
||||
|
||||
Authors: Patrick Ryan, Christian Reich, Clair Blacketer
|
||||
|
||||
|
|
@ -60,7 +60,7 @@ DISTSTYLE ALL;
|
|||
CREATE TABLE vocabulary (vocabulary_id VARCHAR(20) NOT NULL,
|
||||
vocabulary_name VARCHAR(255) NOT NULL,
|
||||
vocabulary_reference VARCHAR(255) NOT NULL,
|
||||
vocabulary_version VARCHAR(255) NULL,
|
||||
vocabulary_version VARCHAR(255) NOT NULL,
|
||||
vocabulary_concept_id INTEGER NOT NULL
|
||||
)
|
||||
DISTSTYLE ALL;
|
||||
|
|
@ -304,18 +304,18 @@ CREATE TABLE visit_detail
|
|||
(visit_detail_id INTEGER NOT NULL ,
|
||||
person_id INTEGER NOT NULL ,
|
||||
visit_detail_concept_id INTEGER NOT NULL ,
|
||||
visit_start_date DATE NOT NULL ,
|
||||
visit_start_datetime TIMESTAMP NULL ,
|
||||
visit_end_date DATE NOT NULL ,
|
||||
visit_end_datetime TIMESTAMP NULL ,
|
||||
visit_type_concept_id INTEGER NOT NULL ,
|
||||
visit_detail_start_date DATE NOT NULL ,
|
||||
visit_detail_start_datetime TIMESTAMP NULL ,
|
||||
visit_detail_end_date DATE NOT NULL ,
|
||||
visit_detail_end_datetime TIMESTAMP NULL ,
|
||||
visit_detail_type_concept_id INTEGER NOT NULL ,
|
||||
provider_id INTEGER NULL ,
|
||||
care_site_id INTEGER NULL ,
|
||||
admitting_source_concept_id INTEGER NULL ,
|
||||
discharge_to_concept_id INTEGER NULL ,
|
||||
preceding_visit_detail_id INTEGER NULL ,
|
||||
visit_source_value VARCHAR(50) NULL ,
|
||||
visit_source_concept_id INTEGER NULL ,
|
||||
visit_detail_source_value VARCHAR(50) NULL ,
|
||||
visit_detail_source_concept_id INTEGER NULL ,
|
||||
admitting_source_value VARCHAR(50) NULL ,
|
||||
discharge_to_source_value VARCHAR(50) NULL ,
|
||||
visit_detail_parent_id INTEGER NULL ,
|
||||
|
|
@ -616,7 +616,7 @@ CREATE TABLE cost
|
|||
payer_plan_period_id INTEGER NULL ,
|
||||
amount_allowed FLOAT NULL ,
|
||||
revenue_code_concept_id INTEGER NULL ,
|
||||
revenue_code_source_value VARCHAR(50) NULL,
|
||||
reveue_code_source_value VARCHAR(50) NULL,
|
||||
drg_concept_id INTEGER NULL,
|
||||
drg_source_value VARCHAR(3) NULL
|
||||
)
|
||||
|
|
|
|||
|
|
@ -2,7 +2,7 @@
|
|||
# Copyright 2014 Observational Health Data Sciences and Informatics
|
||||
#
|
||||
#
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# Licensed under the Apache License, Version 2.0 (the "License")
|
||||
# you may not use this file except in compliance with the License.
|
||||
# You may obtain a copy of the License at
|
||||
#
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
|
||||
sql server script to create foreign key constraints within OMOP common data model, version 5.3.0
|
||||
|
||||
last revised: 15-November-2017
|
||||
last revised: 14-June-2018
|
||||
|
||||
author: Patrick Ryan, Clair Blacketer
|
||||
|
||||
|
|
@ -80,12 +80,16 @@ ALTER TABLE relationship ADD CONSTRAINT fpk_relationship_reverse FOREIGN KEY (re
|
|||
|
||||
ALTER TABLE concept_synonym ADD CONSTRAINT fpk_concept_synonym_concept FOREIGN KEY (concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE concept_synonym ADD CONSTRAINT fpk_concept_synonym_language FOREIGN KEY (language_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE concept_ancestor ADD CONSTRAINT fpk_concept_ancestor_concept_1 FOREIGN KEY (ancestor_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE concept_ancestor ADD CONSTRAINT fpk_concept_ancestor_concept_2 FOREIGN KEY (descendant_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_v_1 FOREIGN KEY (source_vocabulary_id) REFERENCES vocabulary (vocabulary_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_concept_id FOREIGN KEY (source_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_v_2 FOREIGN KEY (target_vocabulary_id) REFERENCES vocabulary (vocabulary_id);
|
||||
|
||||
ALTER TABLE source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_c_1 FOREIGN KEY (target_concept_id) REFERENCES concept (concept_id);
|
||||
|
|
@ -102,6 +106,10 @@ ALTER TABLE drug_strength ADD CONSTRAINT fpk_drug_strength_unit_3 FOREIGN KEY (d
|
|||
|
||||
ALTER TABLE cohort_definition ADD CONSTRAINT fpk_cohort_definition_concept FOREIGN KEY (definition_type_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE cohort_definition ADD CONSTRAINT fpk_cohort_subject_concept FOREIGN KEY (subject_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE attribute_definition ADD CONSTRAINT fpk_attribute_type_concept FOREIGN KEY (attribute_type_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
|
||||
/**************************
|
||||
|
||||
|
|
@ -184,13 +192,13 @@ ALTER TABLE visit_occurrence ADD CONSTRAINT fpk_visit_preceding FOREIGN KEY (pre
|
|||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_person FOREIGN KEY (person_id) REFERENCES person (person_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_type_concept FOREIGN KEY (visit_type_concept_id) REFERENCES concept (concept_id);
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_type_concept FOREIGN KEY (visit_detail_type_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_provider FOREIGN KEY (provider_id) REFERENCES provider (provider_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_care_site FOREIGN KEY (care_site_id) REFERENCES care_site (care_site_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_concept_s FOREIGN KEY (visit_source_concept_id) REFERENCES concept (concept_id);
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_concept_s FOREIGN KEY (visit_detail_source_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
ALTER TABLE visit_detail ADD CONSTRAINT fpk_v_detail_admitting_s FOREIGN KEY (admitting_source_concept_id) REFERENCES concept (concept_id);
|
||||
|
||||
|
|
@ -375,7 +383,7 @@ Standardized derived elements
|
|||
************************/
|
||||
|
||||
|
||||
ALTER TABLE cohort ADD CONSTRAINT fpk_cohort_definition FOREIGN KEY (cohort_definition_id) REFERENCES cohort_definition (cohort_definition_id);
|
||||
--ALTER TABLE cohort ADD CONSTRAINT fpk_cohort_definition FOREIGN KEY (cohort_definition_id) REFERENCES cohort_definition (cohort_definition_id);
|
||||
|
||||
|
||||
ALTER TABLE cohort_attribute ADD CONSTRAINT fpk_ca_cohort_definition FOREIGN KEY (cohort_definition_id) REFERENCES cohort_definition (cohort_definition_id);
|
||||
|
|
|
|||
|
|
@ -2,7 +2,7 @@
|
|||
# Copyright 2017-11 Observational Health Data Sciences and Informatics
|
||||
#
|
||||
#
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# Licensed under the Apache License, Version 2.0 (the "License")
|
||||
# you may not use this file except in compliance with the License.
|
||||
# You may obtain a copy of the License at
|
||||
#
|
||||
|
|
@ -28,7 +28,7 @@
|
|||
|
||||
sql server script to create OMOP common data model version 5.3
|
||||
|
||||
last revised: 6-Nov-2017
|
||||
last revised: 14-June-2018
|
||||
|
||||
Authors: Patrick Ryan, Christian Reich, Clair Blacketer
|
||||
|
||||
|
|
@ -62,7 +62,7 @@ CREATE TABLE vocabulary (
|
|||
vocabulary_id VARCHAR(20) NOT NULL,
|
||||
vocabulary_name VARCHAR(255) NOT NULL,
|
||||
vocabulary_reference VARCHAR(255) NOT NULL,
|
||||
vocabulary_version VARCHAR(255) NULL,
|
||||
vocabulary_version VARCHAR(255) NOT NULL,
|
||||
vocabulary_concept_id INTEGER NOT NULL
|
||||
)
|
||||
;
|
||||
|
|
@ -324,18 +324,18 @@ CREATE TABLE visit_detail
|
|||
visit_detail_id INTEGER NOT NULL ,
|
||||
person_id INTEGER NOT NULL ,
|
||||
visit_detail_concept_id INTEGER NOT NULL ,
|
||||
visit_start_date DATE NOT NULL ,
|
||||
visit_start_datetime DATETIME2 NULL ,
|
||||
visit_end_date DATE NOT NULL ,
|
||||
visit_end_datetime DATETIME2 NULL ,
|
||||
visit_type_concept_id INTEGER NOT NULL ,
|
||||
visit_detail_start_date DATE NOT NULL ,
|
||||
visit_detail_start_datetime DATETIME2 NULL ,
|
||||
visit_detail_end_date DATE NOT NULL ,
|
||||
visit_detail_end_datetime DATETIME2 NULL ,
|
||||
visit_detail_type_concept_id INTEGER NOT NULL ,
|
||||
provider_id INTEGER NULL ,
|
||||
care_site_id INTEGER NULL ,
|
||||
admitting_source_concept_id INTEGER NULL ,
|
||||
discharge_to_concept_id INTEGER NULL ,
|
||||
preceding_visit_detail_id INTEGER NULL ,
|
||||
visit_source_value VARCHAR(50) NULL ,
|
||||
visit_source_concept_id INTEGER NULL ,
|
||||
visit_detail_source_value VARCHAR(50) NULL ,
|
||||
visit_detail_source_concept_id INTEGER NULL ,
|
||||
admitting_source_value VARCHAR(50) NULL ,
|
||||
discharge_to_source_value VARCHAR(50) NULL ,
|
||||
visit_detail_parent_id INTEGER NULL ,
|
||||
|
|
@ -650,7 +650,7 @@ CREATE TABLE cost
|
|||
payer_plan_period_id INTEGER NULL ,
|
||||
amount_allowed FLOAT NULL ,
|
||||
revenue_code_concept_id INTEGER NULL ,
|
||||
revenue_code_source_value VARCHAR(50) NULL,
|
||||
reveue_code_source_value VARCHAR(50) NULL,
|
||||
drg_concept_id INTEGER NULL,
|
||||
drg_source_value VARCHAR(3) NULL
|
||||
)
|
||||
|
|
|
|||
Loading…
Reference in New Issue