mz-health/OMOP
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OMOP
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This commit is contained in:
Maxim Moinat 2023-03-30 16:01:54 +02:00
parent f0637ad97d
commit 2bd79da969
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1 changed files with 9 additions and 9 deletions
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rmd/sqlScripts.Rmd
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@ -462,10 +462,10 @@ SELECT
'<your_source_documentation_reference>', -- e.g. link to source data dictionary
'<your_etl_reference>', -- e.g. link to ETL documentation
'<your_source_release_date>', -- when the source data was pulled
getdate(),
getdate(), -- or the date of ETL run
'v5.4',
vocabulary_version,
756265 -- OMOP CDM Version 5.4.0
756265 -- 'OMOP CDM Version 5.4.0'
FROM @cdm_schema.vocabulary
WHERE vocabulary_id = 'None';
```
@ -478,11 +478,11 @@ The query below will utilize the Visit Concept hierarcy to find the highest-leve
```{sql eval=FALSE, echo=TRUE}
SELECT concept_id, concept_name
FROM concept
LEFT JOIN concept_ancestor
ON concept_id=descendant_concept_id
AND ancestor_concept_id!=descendant_concept_id
WHERE domain_id='Visit'
AND standard_concept='S'
AND ancestor_concept_id IS NULL
FROM concept
LEFT JOIN concept_ancestor
ON concept_id=descendant_concept_id
AND ancestor_concept_id!=descendant_concept_id
WHERE domain_id='Visit'
AND standard_concept='S'
AND ancestor_concept_id IS NULL
```