From 9431a2cd30a56fd5cc4993f0c3aafb1d0e1e4d88 Mon Sep 17 00:00:00 2001 From: Clair Blacketer Date: Wed, 7 Feb 2018 08:54:35 -0500 Subject: [PATCH 1/3] Closes #150 --- BigQuery/OMOP CDM bigquery ddl.txt | 3 +- Impala/OMOP CDM impala ddl.txt | 4 +- Netezza/OMOP CDM netezza ddl.txt | 6 +-- Oracle/OMOP CDM oracle ddl.txt | 5 +-- ParallelDataWarehouse/OMOP CDM pdw ddl.txt | 43 +++++++++++----------- PostgreSQL/OMOP CDM postgresql ddl.txt | 5 +-- Redshift/OMOP CDM redshift ddl.txt | 43 +++++++++++----------- Sql Server/OMOP CDM sql server ddl.txt | 5 +-- 8 files changed, 54 insertions(+), 60 deletions(-) diff --git a/BigQuery/OMOP CDM bigquery ddl.txt b/BigQuery/OMOP CDM bigquery ddl.txt index 385c177..44438d9 100644 --- a/BigQuery/OMOP CDM bigquery ddl.txt +++ b/BigQuery/OMOP CDM bigquery ddl.txt @@ -391,7 +391,6 @@ create table measurement measurement_concept_id integer not null , measurement_date date not null , measurement_time varchar(10) null , - measurement_datetime datetime null , measurement_type_concept_id integer not null , operator_concept_id integer null , value_as_number float null , @@ -551,7 +550,7 @@ create table payer_plan_period sponsor_source_concept_id integer null , family_source_value varchar(50) null , stop_reason_concept_id integer null , - stop_reason_source_value integer null , + stop_reason_source_value varchar(50) null , stop_reason_source_concept_id integer null ) ; diff --git a/Impala/OMOP CDM impala ddl.txt b/Impala/OMOP CDM impala ddl.txt index 3be1202..ceab91b 100644 --- a/Impala/OMOP CDM impala ddl.txt +++ b/Impala/OMOP CDM impala ddl.txt @@ -816,7 +816,7 @@ CREATE TABLE measurement measurement_date TIMESTAMP, - measurement_datetime TIMESTAMP, + measurement_time VARCHAR(10), measurement_type_concept_id INTEGER, @@ -1134,7 +1134,7 @@ CREATE TABLE payer_plan_period stop_reason_concept_id INTEGER, - stop_reason_source_value INTEGER, + stop_reason_source_value VARCHAR(50), stop_reason_source_concept_id INTEGER ) diff --git a/Netezza/OMOP CDM netezza ddl.txt b/Netezza/OMOP CDM netezza ddl.txt index d140cca..87351fa 100644 --- a/Netezza/OMOP CDM netezza ddl.txt +++ b/Netezza/OMOP CDM netezza ddl.txt @@ -28,7 +28,7 @@ netezza script to create OMOP common data model version 5.3 -last revised: 6-Nov-2017 +last revised: 8-Jan-2018 Authors: Patrick Ryan, Christian Reich, Clair Blacketer @@ -479,7 +479,7 @@ CREATE TABLE measurement person_id INTEGER NOT NULL , measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , - measurement_datetime DATETIME NULL , + measurement_time VARCHAR(10) NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number REAL NULL , @@ -665,7 +665,7 @@ CREATE TABLE payer_plan_period sponsor_source_concept_id INTEGER NULL , family_source_value VARCHAR(50) NULL , stop_reason_concept_id INTEGER NULL , - stop_reason_source_value INTEGER NULL , + stop_reason_source_value VARCHAR(50) NULL , stop_reason_source_concept_id INTEGER NULL ) DISTRIBUTE ON (person_id) diff --git a/Oracle/OMOP CDM oracle ddl.txt b/Oracle/OMOP CDM oracle ddl.txt index d61bdc2..094d8ed 100644 --- a/Oracle/OMOP CDM oracle ddl.txt +++ b/Oracle/OMOP CDM oracle ddl.txt @@ -447,8 +447,7 @@ CREATE TABLE measurement person_id INTEGER NOT NULL , measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , - measurement_time VARCHAR(10) NULL , - measurement_datetime TIMESTAMP NULL , + measurement_time VARCHAR(10) NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number FLOAT NULL , @@ -623,7 +622,7 @@ CREATE TABLE payer_plan_period sponsor_source_concept_id INTEGER NULL , family_source_value VARCHAR(50) NULL , stop_reason_concept_id INTEGER NULL , - stop_reason_source_value INTEGER NULL , + stop_reason_source_value VARCHAR(50) NULL , stop_reason_source_concept_id INTEGER NULL ) ; diff --git a/ParallelDataWarehouse/OMOP CDM pdw ddl.txt b/ParallelDataWarehouse/OMOP CDM pdw ddl.txt index 1c71fac..2a63661 100644 --- a/ParallelDataWarehouse/OMOP CDM pdw ddl.txt +++ b/ParallelDataWarehouse/OMOP CDM pdw ddl.txt @@ -207,7 +207,7 @@ Standardized clinical data ************************/ ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE person (person_id INTEGER NOT NULL , gender_concept_id INTEGER NOT NULL , @@ -231,7 +231,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE person WITH (DISTRIBUTION = HASH(person_id)); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE observation_period (observation_period_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -242,7 +242,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE observation_period WITH (DISTRIBUTION = HASH(person_id)); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE specimen (specimen_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -263,7 +263,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE specimen WITH (DISTRIBUTION = HASH(person_id)); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE death (person_id INTEGER NOT NULL , death_date DATE NOT NULL , @@ -276,7 +276,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE death WITH (DISTRIBUTION = HASH(person_id)); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE visit_occurrence (visit_occurrence_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -299,7 +299,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE visit_occurrence WITH (DISTRIBUTION = HASH(person_id)); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE visit_detail (visit_detail_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -324,7 +324,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE visit_detail WITH (DISTRIBUTION = HASH(person_id)); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE procedure_occurrence (procedure_occurrence_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -344,7 +344,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE procedure_occurrence WITH (DISTRIBUTION = HASH(person_id)); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE drug_exposure (drug_exposure_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -373,7 +373,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE drug_exposure WITH (DISTRIBUTION = HASH(person_id)); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE device_exposure (device_exposure_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -394,7 +394,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE device_exposure WITH (DISTRIBUTION = HASH(person_id)); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE condition_occurrence (condition_occurrence_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -416,14 +416,13 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE condition_occurrence WITH (DISTRIBUTION = HASH(person_id)); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE measurement (measurement_id INTEGER NOT NULL , person_id INTEGER NOT NULL , measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , - measurement_time VARCHAR(10) NULL , - measurement_datetime DATETIME NULL , + measurement_time VARCHAR(10) NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number FLOAT NULL , @@ -442,7 +441,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE measurement WITH (DISTRIBUTION = HASH(person_id)); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE note (note_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -482,7 +481,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE note_nlp WITH (DISTRIBUTION = REPLICATE); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE observation (observation_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -573,7 +572,7 @@ Standardized health economics ************************/ ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE payer_plan_period (payer_plan_period_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -590,7 +589,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE payer_plan_period sponsor_source_concept_id INTEGER NULL , family_source_value VARCHAR(50) NULL , stop_reason_concept_id INTEGER NULL , - stop_reason_source_value INTEGER NULL , + stop_reason_source_value VARCHAR(50) NULL , stop_reason_source_concept_id INTEGER NULL ) WITH (DISTRIBUTION = HASH(person_id)); @@ -630,7 +629,7 @@ Standardized derived elements ************************/ ---HINT DISTRIBUTE_ON_KEY(subject_id) +--HINT DISTRIBUTE_ON_KEY(subject_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE cohort (cohort_definition_id INTEGER NOT NULL , subject_id INTEGER NOT NULL , @@ -640,7 +639,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE cohort WITH (DISTRIBUTION = HASH(subject_id)); ---HINT DISTRIBUTE_ON_KEY(subject_id) +--HINT DISTRIBUTE_ON_KEY(subject_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE cohort_attribute (cohort_definition_id INTEGER NOT NULL , subject_id INTEGER NOT NULL , @@ -653,7 +652,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE cohort_attribute WITH (DISTRIBUTION = HASH(subject_id)); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE drug_era (drug_era_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -666,7 +665,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE drug_era WITH (DISTRIBUTION = HASH(person_id)); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE dose_era (dose_era_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -679,7 +678,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE dose_era WITH (DISTRIBUTION = HASH(person_id)); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) IF XACT_STATE() = 1 COMMIT; CREATE TABLE condition_era (condition_era_id INTEGER NOT NULL , person_id INTEGER NOT NULL , diff --git a/PostgreSQL/OMOP CDM postgresql ddl.txt b/PostgreSQL/OMOP CDM postgresql ddl.txt index 4c0b3ed..7250334 100644 --- a/PostgreSQL/OMOP CDM postgresql ddl.txt +++ b/PostgreSQL/OMOP CDM postgresql ddl.txt @@ -447,8 +447,7 @@ CREATE TABLE measurement person_id INTEGER NOT NULL , measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , - measurement_time VARCHAR(10) NULL , - measurement_datetime TIMESTAMP NULL , + measurement_time VARCHAR(10) NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number NUMERIC NULL , @@ -623,7 +622,7 @@ CREATE TABLE payer_plan_period sponsor_source_concept_id INTEGER NULL , family_source_value VARCHAR(50) NULL , stop_reason_concept_id INTEGER NULL , - stop_reason_source_value INTEGER NULL , + stop_reason_source_value VARCHAR(50) NULL , stop_reason_source_concept_id INTEGER NULL ) ; diff --git a/Redshift/OMOP CDM redshift ddl.txt b/Redshift/OMOP CDM redshift ddl.txt index de4d591..b66a477 100644 --- a/Redshift/OMOP CDM redshift ddl.txt +++ b/Redshift/OMOP CDM redshift ddl.txt @@ -207,7 +207,7 @@ Standardized clinical data ************************/ ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE person (person_id INTEGER NOT NULL , gender_concept_id INTEGER NOT NULL , @@ -231,7 +231,7 @@ CREATE TABLE person DISTKEY(person_id); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE observation_period (observation_period_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -242,7 +242,7 @@ CREATE TABLE observation_period DISTKEY(person_id); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE specimen (specimen_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -263,7 +263,7 @@ CREATE TABLE specimen DISTKEY(person_id); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE death (person_id INTEGER NOT NULL , death_date DATE NOT NULL , @@ -276,7 +276,7 @@ CREATE TABLE death DISTKEY(person_id); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE visit_occurrence (visit_occurrence_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -299,7 +299,7 @@ CREATE TABLE visit_occurrence DISTKEY(person_id); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE visit_detail (visit_detail_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -324,7 +324,7 @@ CREATE TABLE visit_detail DISTKEY(person_id); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE procedure_occurrence (procedure_occurrence_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -344,7 +344,7 @@ CREATE TABLE procedure_occurrence DISTKEY(person_id); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE drug_exposure (drug_exposure_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -373,7 +373,7 @@ CREATE TABLE drug_exposure DISTKEY(person_id); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE device_exposure (device_exposure_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -394,7 +394,7 @@ CREATE TABLE device_exposure DISTKEY(person_id); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE condition_occurrence (condition_occurrence_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -416,14 +416,13 @@ CREATE TABLE condition_occurrence DISTKEY(person_id); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE measurement (measurement_id INTEGER NOT NULL , person_id INTEGER NOT NULL , measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , - measurement_time VARCHAR(10) NULL , - measurement_datetime TIMESTAMP NULL , + measurement_time VARCHAR(10) NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number FLOAT NULL , @@ -442,7 +441,7 @@ CREATE TABLE measurement DISTKEY(person_id); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE note (note_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -482,7 +481,7 @@ CREATE TABLE note_nlp DISTSTYLE ALL; ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE observation (observation_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -573,7 +572,7 @@ Standardized health economics ************************/ ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE payer_plan_period (payer_plan_period_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -590,7 +589,7 @@ CREATE TABLE payer_plan_period sponsor_source_concept_id INTEGER NULL , family_source_value VARCHAR(50) NULL , stop_reason_concept_id INTEGER NULL , - stop_reason_source_value INTEGER NULL , + stop_reason_source_value VARCHAR(50) NULL , stop_reason_source_concept_id INTEGER NULL ) DISTKEY(person_id); @@ -630,7 +629,7 @@ Standardized derived elements ************************/ ---HINT DISTRIBUTE_ON_KEY(subject_id) +--HINT DISTRIBUTE_ON_KEY(subject_id) CREATE TABLE cohort (cohort_definition_id INTEGER NOT NULL , subject_id INTEGER NOT NULL , @@ -640,7 +639,7 @@ CREATE TABLE cohort DISTKEY(subject_id); ---HINT DISTRIBUTE_ON_KEY(subject_id) +--HINT DISTRIBUTE_ON_KEY(subject_id) CREATE TABLE cohort_attribute (cohort_definition_id INTEGER NOT NULL , subject_id INTEGER NOT NULL , @@ -653,7 +652,7 @@ CREATE TABLE cohort_attribute DISTKEY(subject_id); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE drug_era (drug_era_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -666,7 +665,7 @@ CREATE TABLE drug_era DISTKEY(person_id); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE dose_era (dose_era_id INTEGER NOT NULL , person_id INTEGER NOT NULL , @@ -679,7 +678,7 @@ CREATE TABLE dose_era DISTKEY(person_id); ---HINT DISTRIBUTE_ON_KEY(person_id) +--HINT DISTRIBUTE_ON_KEY(person_id) CREATE TABLE condition_era (condition_era_id INTEGER NOT NULL , person_id INTEGER NOT NULL , diff --git a/Sql Server/OMOP CDM sql server ddl.txt b/Sql Server/OMOP CDM sql server ddl.txt index 9d635f2..c5e4bd4 100644 --- a/Sql Server/OMOP CDM sql server ddl.txt +++ b/Sql Server/OMOP CDM sql server ddl.txt @@ -447,8 +447,7 @@ CREATE TABLE measurement person_id INTEGER NOT NULL , measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , - measurement_time VARCHAR(10) NULL , - measurement_datetime DATETIME NULL , + measurement_time VARCHAR(10) NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number FLOAT NULL , @@ -623,7 +622,7 @@ CREATE TABLE payer_plan_period sponsor_source_concept_id INTEGER NULL , family_source_value VARCHAR(50) NULL , stop_reason_concept_id INTEGER NULL , - stop_reason_source_value INTEGER NULL , + stop_reason_source_value VARCHAR(50) NULL , stop_reason_source_concept_id INTEGER NULL ) ; From dab7208accfcee1ff53b8374cf8aa3a25b9c203a Mon Sep 17 00:00:00 2001 From: Clair Blacketer Date: Wed, 7 Feb 2018 13:57:58 -0500 Subject: [PATCH 2/3] Closes #150. Changed measurement_time to measurement_datetime. --- BigQuery/OMOP CDM bigquery ddl.txt | 2 +- Impala/OMOP CDM impala ddl.txt | 2 +- Netezza/OMOP CDM netezza ddl.txt | 2 +- Oracle/OMOP CDM oracle ddl.txt | 2 +- ParallelDataWarehouse/OMOP CDM pdw ddl.txt | 2 +- PostgreSQL/OMOP CDM postgresql ddl.txt | 2 +- Redshift/OMOP CDM redshift ddl.txt | 2 +- Sql Server/OMOP CDM sql server ddl.txt | 2 +- 8 files changed, 8 insertions(+), 8 deletions(-) diff --git a/BigQuery/OMOP CDM bigquery ddl.txt b/BigQuery/OMOP CDM bigquery ddl.txt index 44438d9..1ff8bec 100644 --- a/BigQuery/OMOP CDM bigquery ddl.txt +++ b/BigQuery/OMOP CDM bigquery ddl.txt @@ -390,7 +390,7 @@ create table measurement person_id integer not null , measurement_concept_id integer not null , measurement_date date not null , - measurement_time varchar(10) null , + measurement_datetime datetime null , measurement_type_concept_id integer not null , operator_concept_id integer null , value_as_number float null , diff --git a/Impala/OMOP CDM impala ddl.txt b/Impala/OMOP CDM impala ddl.txt index ceab91b..9fec86d 100644 --- a/Impala/OMOP CDM impala ddl.txt +++ b/Impala/OMOP CDM impala ddl.txt @@ -816,7 +816,7 @@ CREATE TABLE measurement measurement_date TIMESTAMP, - measurement_time VARCHAR(10), + measurement_datetime TIMESTAMP, measurement_type_concept_id INTEGER, diff --git a/Netezza/OMOP CDM netezza ddl.txt b/Netezza/OMOP CDM netezza ddl.txt index 87351fa..4bdc44e 100644 --- a/Netezza/OMOP CDM netezza ddl.txt +++ b/Netezza/OMOP CDM netezza ddl.txt @@ -479,7 +479,7 @@ CREATE TABLE measurement person_id INTEGER NOT NULL , measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , - measurement_time VARCHAR(10) NULL , + measurement_datetime DATETIME NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number REAL NULL , diff --git a/Oracle/OMOP CDM oracle ddl.txt b/Oracle/OMOP CDM oracle ddl.txt index 094d8ed..c1427c4 100644 --- a/Oracle/OMOP CDM oracle ddl.txt +++ b/Oracle/OMOP CDM oracle ddl.txt @@ -447,7 +447,7 @@ CREATE TABLE measurement person_id INTEGER NOT NULL , measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , - measurement_time VARCHAR(10) NULL , + measurement_datetime TIMESTAMP NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number FLOAT NULL , diff --git a/ParallelDataWarehouse/OMOP CDM pdw ddl.txt b/ParallelDataWarehouse/OMOP CDM pdw ddl.txt index 2a63661..cdee639 100644 --- a/ParallelDataWarehouse/OMOP CDM pdw ddl.txt +++ b/ParallelDataWarehouse/OMOP CDM pdw ddl.txt @@ -422,7 +422,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE measurement person_id INTEGER NOT NULL , measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , - measurement_time VARCHAR(10) NULL , + measurement_datetime DATETIME NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number FLOAT NULL , diff --git a/PostgreSQL/OMOP CDM postgresql ddl.txt b/PostgreSQL/OMOP CDM postgresql ddl.txt index 7250334..1edef4a 100644 --- a/PostgreSQL/OMOP CDM postgresql ddl.txt +++ b/PostgreSQL/OMOP CDM postgresql ddl.txt @@ -447,7 +447,7 @@ CREATE TABLE measurement person_id INTEGER NOT NULL , measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , - measurement_time VARCHAR(10) NULL , + measurement_datetime TIMESTAMP NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number NUMERIC NULL , diff --git a/Redshift/OMOP CDM redshift ddl.txt b/Redshift/OMOP CDM redshift ddl.txt index b66a477..eaef616 100644 --- a/Redshift/OMOP CDM redshift ddl.txt +++ b/Redshift/OMOP CDM redshift ddl.txt @@ -422,7 +422,7 @@ CREATE TABLE measurement person_id INTEGER NOT NULL , measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , - measurement_time VARCHAR(10) NULL , + measurement_datetime TIMESTAMP NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number FLOAT NULL , diff --git a/Sql Server/OMOP CDM sql server ddl.txt b/Sql Server/OMOP CDM sql server ddl.txt index c5e4bd4..f9c1552 100644 --- a/Sql Server/OMOP CDM sql server ddl.txt +++ b/Sql Server/OMOP CDM sql server ddl.txt @@ -447,7 +447,7 @@ CREATE TABLE measurement person_id INTEGER NOT NULL , measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , - measurement_time VARCHAR(10) NULL , + measurement_datetime DATETIME NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number FLOAT NULL , From 2c952dca984a7bc8156f07d8f92c0932dd533787 Mon Sep 17 00:00:00 2001 From: Clair Blacketer Date: Wed, 7 Feb 2018 14:18:39 -0500 Subject: [PATCH 3/3] Addresses #150, adding time back in to the measurement table for backwards compatibility --- BigQuery/OMOP CDM bigquery ddl.txt | 1 + .../StandardizedClinicalDataTables/MEASUREMENT.md | 1 + Impala/OMOP CDM impala ddl.txt | 2 ++ Netezza/OMOP CDM netezza ddl.txt | 1 + Oracle/OMOP CDM oracle ddl.txt | 1 + ParallelDataWarehouse/OMOP CDM pdw ddl.txt | 1 + PostgreSQL/OMOP CDM postgresql ddl.txt | 7 ++++--- Redshift/OMOP CDM redshift ddl.txt | 1 + Sql Server/OMOP CDM sql server ddl.txt | 1 + 9 files changed, 13 insertions(+), 3 deletions(-) diff --git a/BigQuery/OMOP CDM bigquery ddl.txt b/BigQuery/OMOP CDM bigquery ddl.txt index 1ff8bec..2bc4bb3 100644 --- a/BigQuery/OMOP CDM bigquery ddl.txt +++ b/BigQuery/OMOP CDM bigquery ddl.txt @@ -391,6 +391,7 @@ create table measurement measurement_concept_id integer not null , measurement_date date not null , measurement_datetime datetime null , + measurement_time varchar(10) null , measurement_type_concept_id integer not null , operator_concept_id integer null , value_as_number float null , diff --git a/Documentation/CommonDataModel_Wiki_Files/StandardizedClinicalDataTables/MEASUREMENT.md b/Documentation/CommonDataModel_Wiki_Files/StandardizedClinicalDataTables/MEASUREMENT.md index f683a82..c443a3d 100644 --- a/Documentation/CommonDataModel_Wiki_Files/StandardizedClinicalDataTables/MEASUREMENT.md +++ b/Documentation/CommonDataModel_Wiki_Files/StandardizedClinicalDataTables/MEASUREMENT.md @@ -7,6 +7,7 @@ Field|Required|Type|Description |measurement_concept_id|Yes|integer|A foreign key to the standard measurement concept identifier in the Standardized Vocabularies.| |measurement_date|Yes|date|The date of the Measurement.| |measurement_datetime|No|datetime|The date and time of the Measurement. Some database systems don't have a datatype of time. To accomodate all temporal analyses, datatype datetime can be used (combining measurement_date and measurement_time [forum discussion](http://forums.ohdsi.org/t/date-time-and-datetime-problem-and-the-world-of-hours-and-1day/314))| +|measurement_time |No|varchar(10)|The time of the Measurement. This is present for backwards compatibility and will deprecated in an upcoming version| |measurement_type_concept_id|Yes|integer|A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the provenance from where the Measurement record was recorded.| |operator_concept_id|No|integer|A foreign key identifier to the predefined Concept in the Standardized Vocabularies reflecting the mathematical operator that is applied to the value_as_number. Operators are <, <=, =, >=, >.| |value_as_number|No|float|A Measurement result where the result is expressed as a numeric value.| diff --git a/Impala/OMOP CDM impala ddl.txt b/Impala/OMOP CDM impala ddl.txt index 9fec86d..4b35d03 100644 --- a/Impala/OMOP CDM impala ddl.txt +++ b/Impala/OMOP CDM impala ddl.txt @@ -818,6 +818,8 @@ CREATE TABLE measurement measurement_datetime TIMESTAMP, + measurement_time VARCHAR(10), + measurement_type_concept_id INTEGER, operator_concept_id INTEGER, diff --git a/Netezza/OMOP CDM netezza ddl.txt b/Netezza/OMOP CDM netezza ddl.txt index 4bdc44e..268eb26 100644 --- a/Netezza/OMOP CDM netezza ddl.txt +++ b/Netezza/OMOP CDM netezza ddl.txt @@ -480,6 +480,7 @@ CREATE TABLE measurement measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , measurement_datetime DATETIME NULL , + measurement_time VARCHAR(10) NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number REAL NULL , diff --git a/Oracle/OMOP CDM oracle ddl.txt b/Oracle/OMOP CDM oracle ddl.txt index c1427c4..c8627f2 100644 --- a/Oracle/OMOP CDM oracle ddl.txt +++ b/Oracle/OMOP CDM oracle ddl.txt @@ -448,6 +448,7 @@ CREATE TABLE measurement measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , measurement_datetime TIMESTAMP NULL , + measurement_time VARCHAR(10) NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number FLOAT NULL , diff --git a/ParallelDataWarehouse/OMOP CDM pdw ddl.txt b/ParallelDataWarehouse/OMOP CDM pdw ddl.txt index cdee639..f712047 100644 --- a/ParallelDataWarehouse/OMOP CDM pdw ddl.txt +++ b/ParallelDataWarehouse/OMOP CDM pdw ddl.txt @@ -423,6 +423,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE measurement measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , measurement_datetime DATETIME NULL , + measurement_time VARCHAR(10) NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number FLOAT NULL , diff --git a/PostgreSQL/OMOP CDM postgresql ddl.txt b/PostgreSQL/OMOP CDM postgresql ddl.txt index 1edef4a..afc3c81 100644 --- a/PostgreSQL/OMOP CDM postgresql ddl.txt +++ b/PostgreSQL/OMOP CDM postgresql ddl.txt @@ -448,13 +448,14 @@ CREATE TABLE measurement measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , measurement_datetime TIMESTAMP NULL , + measurement_time VARCHAR(10) NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , - value_as_number NUMERIC NULL , + value_as_number NUMERIC NULL , value_as_concept_id INTEGER NULL , unit_concept_id INTEGER NULL , - range_low NUMERIC NULL , - range_high NUMERIC NULL , + range_low NUMERIC NULL , + range_high NUMERIC NULL , provider_id INTEGER NULL , visit_occurrence_id INTEGER NULL , visit_detail_id INTEGER NULL , diff --git a/Redshift/OMOP CDM redshift ddl.txt b/Redshift/OMOP CDM redshift ddl.txt index eaef616..9aadf2c 100644 --- a/Redshift/OMOP CDM redshift ddl.txt +++ b/Redshift/OMOP CDM redshift ddl.txt @@ -423,6 +423,7 @@ CREATE TABLE measurement measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , measurement_datetime TIMESTAMP NULL , + measurement_time VARCHAR(10) NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number FLOAT NULL , diff --git a/Sql Server/OMOP CDM sql server ddl.txt b/Sql Server/OMOP CDM sql server ddl.txt index f9c1552..f57770f 100644 --- a/Sql Server/OMOP CDM sql server ddl.txt +++ b/Sql Server/OMOP CDM sql server ddl.txt @@ -448,6 +448,7 @@ CREATE TABLE measurement measurement_concept_id INTEGER NOT NULL , measurement_date DATE NOT NULL , measurement_datetime DATETIME NULL , + measurement_time VARCHAR(10) NULL , measurement_type_concept_id INTEGER NOT NULL , operator_concept_id INTEGER NULL , value_as_number FLOAT NULL ,