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OMOP
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Extend unit tests to cover InterSystems IRIS

This commit is contained in:
Benjamin De Boe 2024-10-23 09:56:57 +02:00
parent 5cf916e3e9
commit 44bc47e5f1
1 changed files with 136 additions and 128 deletions
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18
tests/testthat/setup.R
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@ -54,6 +54,13 @@ getConnectionDetails <- function(dbms) {
password = Sys.getenv("CDMDDLBASE_ORACLE_PASSWORD"),
server = Sys.getenv("CDMDDLBASE_ORACLE_SERVER"),
pathToDriver = jdbcDriverFolder
),
"iris" = createConnectionDetails(
dbms = "iris",
user = Sys.getenv("CDMDDLBASE_IRIS_USER"),
password = Sys.getenv("CDMDDLBASE_IRIS_PASSWORD"),
connectionString = Sys.getenv("CDMDDLBASE_IRIS_URL"),
pathToDriver = jdbcDriverFolder
)
)
}
@ -64,7 +71,8 @@ getSchema <- function(dbms) {
"postgresql" = Sys.getenv("CDMDDLBASE_POSTGRESQL_SCHEMA"),
"redshift" = Sys.getenv("CDMDDLBASE_REDSHIFT_SCHEMA"),
"sql server" = Sys.getenv("CDMDDLBASE_SQL_SERVER_CDM_SCHEMA"),
"oracle" = Sys.getenv("CDMDDLBASE_ORACLE_CDM_SCHEMA")
"oracle" = Sys.getenv("CDMDDLBASE_ORACLE_CDM_SCHEMA"),
"iris" = Sys.getenv("CDMDDLBASE_IRIS_CDM_SCHEMA")
)
}
@ -74,11 +82,11 @@ listTablesInSchema <- function(connectionDetails, schema) {
class(schema) == "character",
length(schema) == 1
)
stopifnot(connectionDetails$dbms %in% c("postgresql", "redshift", "sql server", "oracle"))
stopifnot(connectionDetails$dbms %in% c("postgresql", "redshift", "sql server", "oracle", "iris"))
con <- DatabaseConnector::connect(connectionDetails)
on.exit(DatabaseConnector::disconnect(con))
dbms <- connectionDetails$dbms
if (dbms %in% c("postgresql", "redshift", "sql server")) {
if (dbms %in% c("postgresql", "redshift", "sql server", "iris")) {
tables <-
dbGetQuery(
con,
@ -106,13 +114,13 @@ dropAllTablesFromSchema <- function(connectionDetails, schema) {
class(schema) == "character",
length(schema) == 1
)
stopifnot(connectionDetails$dbms %in% c("postgresql", "redshift", "sql server", "oracle"))
stopifnot(connectionDetails$dbms %in% c("postgresql", "redshift", "sql server", "oracle", "iris"))
tableNames <- listTablesInSchema(connectionDetails, schema)
con <- DatabaseConnector::connect(connectionDetails)
on.exit(DatabaseConnector::disconnect(con))
dbms <- connectionDetails$dbms
if (dbms %in% c("redshift", "postgresql", "sql server")) {
if (dbms %in% c("redshift", "postgresql", "sql server", "iris")) {
for (tableName in tableNames) {
DBI::dbExecute(con, paste(
"DROP TABLE IF EXISTS",