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Fixes to CDM v5.4 constraints 

Removed an incorrect linkage of person.person_id as a foreign key to payer_plan_period.payer_plan_period_id
This commit is contained in:
Clair Blacketer 2022-01-21 15:32:48 -05:00
parent 8fecffb215
commit 477fb8a191
10 changed files with 1 additions and 18 deletions
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2
inst/csv/OMOP_CDMv5.4_Field_Level.csv
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@ -293,7 +293,7 @@ PROVIDER,specialty_source_value,No,varchar(50),"This is the kind of provider or
PROVIDER,specialty_source_concept_id,No,integer,This is often zero as many sites use proprietary codes to store physician speciality.,If the source data codes provider specialty in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,,,
PROVIDER,gender_source_value,No,varchar(50),This is provider's gender as it appears in the source data.,Put the provider's gender as it appears in the source data. This field is up to the discretion of the ETL-er as to whether this should be the coded value from the source or the text description of the lookup value.,No,No,,,,,
PROVIDER,gender_source_concept_id,No,integer,This is often zero as many sites use proprietary codes to store provider gender.,If the source data codes provider gender in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,,,
PAYER_PLAN_PERIOD,payer_plan_period_id,Yes,integer,"A unique identifier for each unique combination of a Person, Payer, Plan, and Period of time.",,Yes,Yes,PERSON,PERSON_ID,,,
PAYER_PLAN_PERIOD,payer_plan_period_id,Yes,integer,"A unique identifier for each unique combination of a Person, Payer, Plan, and Period of time.",,Yes,No,,,,,
PAYER_PLAN_PERIOD,person_id,Yes,integer,The Person covered by the Plan.,"A single Person can have multiple, overlapping, PAYER_PLAN_PERIOD records",No,Yes,PERSON,PERSON_ID,,,
PAYER_PLAN_PERIOD,payer_plan_period_start_date,Yes,date,Start date of Plan coverage.,,No,No,,,,,
PAYER_PLAN_PERIOD,payer_plan_period_end_date,Yes,date,End date of Plan coverage.,,No,No,,,,,

1 cdmTableName cdmFieldName isRequired cdmDatatype userGuidance etlConventions isPrimaryKey isForeignKey fkTableName fkFieldName fkDomain fkClass unique DQ identifiers
293 COST paid_by_patient No float No No
294 COST paid_patient_copay No float No No
295 COST paid_patient_coinsurance No float No No
296 COST paid_patient_deductible No float No No
297 COST paid_by_primary No float No No
298 COST paid_ingredient_cost No float No No
299 COST paid_dispensing_fee No float No No

2
inst/ddl/5.4/bigquery/OMOPCDM_bigquery_5.4_constraints.sql
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@ -240,8 +240,6 @@ alter table @cdmDatabaseSchema.provider add constraint fpk_provider_specialty_so
alter table @cdmDatabaseSchema.provider add constraint fpk_provider_gender_source_concept_id foreign key (gender_source_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.payer_plan_period add constraint fpk_payer_plan_period_payer_plan_period_id foreign key (payer_plan_period_id) references @cdmDatabaseSchema.person (person_id);
alter table @cdmDatabaseSchema.payer_plan_period add constraint fpk_payer_plan_period_person_id foreign key (person_id) references @cdmDatabaseSchema.person (person_id);
alter table @cdmDatabaseSchema.payer_plan_period add constraint fpk_payer_plan_period_payer_concept_id foreign key (payer_concept_id) references @cdmDatabaseSchema.concept (concept_id);

2
inst/ddl/5.4/impala/OMOPCDM_impala_5.4_constraints.sql
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@ -240,8 +240,6 @@ ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_specialty_so
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_plan_period_id FOREIGN KEY (payer_plan_period_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_concept_id FOREIGN KEY (payer_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);

2
inst/ddl/5.4/netezza/OMOPCDM_netezza_5.4_constraints.sql
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@ -240,8 +240,6 @@ ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_specialty_so
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_plan_period_id FOREIGN KEY (payer_plan_period_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_concept_id FOREIGN KEY (payer_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);

2
inst/ddl/5.4/oracle/OMOPCDM_oracle_5.4_constraints.sql
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@ -240,8 +240,6 @@ ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_specialty_so
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_plan_period_id FOREIGN KEY (payer_plan_period_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_concept_id FOREIGN KEY (payer_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);

2
inst/ddl/5.4/pdw/OMOPCDM_pdw_5.4_constraints.sql
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@ -240,8 +240,6 @@ ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_specialty_so
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_plan_period_id FOREIGN KEY (payer_plan_period_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_concept_id FOREIGN KEY (payer_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);

2
inst/ddl/5.4/postgresql/OMOPCDM_postgresql_5.4_constraints.sql
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@ -240,8 +240,6 @@ ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_specialty_so
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_plan_period_id FOREIGN KEY (payer_plan_period_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_concept_id FOREIGN KEY (payer_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);

2
inst/ddl/5.4/redshift/OMOPCDM_redshift_5.4_constraints.sql
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@ -240,8 +240,6 @@ ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_specialty_so
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_plan_period_id FOREIGN KEY (payer_plan_period_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_concept_id FOREIGN KEY (payer_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);

1
inst/ddl/5.4/spark/OMOPCDM_spark_5.4_constraints.sql
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@ -118,7 +118,6 @@ ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_care_site_id
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_gender_concept_id FOREIGN KEY (gender_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_specialty_source_concept_id FOREIGN KEY (specialty_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_plan_period_id FOREIGN KEY (payer_plan_period_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_concept_id FOREIGN KEY (payer_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_source_concept_id FOREIGN KEY (payer_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);

2
inst/ddl/5.4/sql_server/OMOPCDM_sql_server_5.4_constraints.sql
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@ -240,8 +240,6 @@ ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_specialty_so
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_plan_period_id FOREIGN KEY (payer_plan_period_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_concept_id FOREIGN KEY (payer_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);