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OMOP
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Merge pull request #111 from rsjaffe/feature/char1 

Changed VARCHAR(1) to CHAR(1)
This commit is contained in:
clairblacketer 2017-09-19 11:52:26 -04:00 committed by GitHub
parent 8258ab7ca3 cd9dbcc86d
commit 5515b0415c
5 changed files with 49 additions and 49 deletions
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20
Impala/OMOP_CDM_ddl_Impala.sql
View File

@ -50,11 +50,11 @@ CREATE TABLE concept (
domain_id VARCHAR(20), domain_id VARCHAR(20),
vocabulary_id VARCHAR(20), vocabulary_id VARCHAR(20),
concept_class_id VARCHAR(20), concept_class_id VARCHAR(20),
standard_concept VARCHAR(1), standard_concept CHAR(1),
concept_code VARCHAR(50), concept_code VARCHAR(50),
valid_start_date VARCHAR(8), -- DATE valid_start_date VARCHAR(8), -- DATE
valid_end_date VARCHAR(8), -- DATE valid_end_date VARCHAR(8), -- DATE
invalid_reason VARCHAR(1) invalid_reason CHAR(1)
) )
ROW FORMAT DELIMITED FIELDS TERMINATED BY '\t' ROW FORMAT DELIMITED FIELDS TERMINATED BY '\t'
TBLPROPERTIES ("skip.header.line.count"="1") TBLPROPERTIES ("skip.header.line.count"="1")
@ -106,7 +106,7 @@ CREATE TABLE concept_relationship (
relationship_id VARCHAR(20), relationship_id VARCHAR(20),
valid_start_date VARCHAR(8), -- DATE valid_start_date VARCHAR(8), -- DATE
valid_end_date VARCHAR(8), -- DATE valid_end_date VARCHAR(8), -- DATE
invalid_reason VARCHAR(1) invalid_reason CHAR(1)
) )
ROW FORMAT DELIMITED FIELDS TERMINATED BY '\t' ROW FORMAT DELIMITED FIELDS TERMINATED BY '\t'
TBLPROPERTIES ("skip.header.line.count"="1") TBLPROPERTIES ("skip.header.line.count"="1")
@ -117,8 +117,8 @@ TBLPROPERTIES ("skip.header.line.count"="1")
CREATE TABLE relationship ( CREATE TABLE relationship (
relationship_id VARCHAR(20), relationship_id VARCHAR(20),
relationship_name VARCHAR(255), relationship_name VARCHAR(255),
is_hierarchical VARCHAR(1), is_hierarchical CHAR(1),
defines_ancestry VARCHAR(1), defines_ancestry CHAR(1),
reverse_relationship_id VARCHAR(20), reverse_relationship_id VARCHAR(20),
relationship_concept_id INTEGER relationship_concept_id INTEGER
) )
@ -158,7 +158,7 @@ CREATE TABLE source_to_concept_map (
target_vocabulary_id VARCHAR(20), target_vocabulary_id VARCHAR(20),
valid_start_date VARCHAR(8), -- DATE valid_start_date VARCHAR(8), -- DATE
valid_end_date VARCHAR(8), -- DATE valid_end_date VARCHAR(8), -- DATE
invalid_reason VARCHAR(1) invalid_reason CHAR(1)
) )
ROW FORMAT DELIMITED FIELDS TERMINATED BY '\t' ROW FORMAT DELIMITED FIELDS TERMINATED BY '\t'
TBLPROPERTIES ("skip.header.line.count"="1") TBLPROPERTIES ("skip.header.line.count"="1")
@ -179,7 +179,7 @@ CREATE TABLE drug_strength (
box_size INTEGER, box_size INTEGER,
valid_start_date VARCHAR(8), -- DATE valid_start_date VARCHAR(8), -- DATE
valid_end_date VARCHAR(8), -- DATE valid_end_date VARCHAR(8), -- DATE
invalid_reason VARCHAR(1) invalid_reason CHAR(1)
) )
ROW FORMAT DELIMITED FIELDS TERMINATED BY '\t' ROW FORMAT DELIMITED FIELDS TERMINATED BY '\t'
TBLPROPERTIES ("skip.header.line.count"="1") TBLPROPERTIES ("skip.header.line.count"="1")
@ -486,7 +486,7 @@ CREATE TABLE note_nlp (
nlp_system VARCHAR(250), nlp_system VARCHAR(250),
nlp_date VARCHAR(8), nlp_date VARCHAR(8),
nlp_datetime VARCHAR(10), nlp_datetime VARCHAR(10),
term_exists VARCHAR(1), term_exists CHAR(1),
term_temporal VARCHAR(50), term_temporal VARCHAR(50),
term_modifiers VARCHAR(2000) term_modifiers VARCHAR(2000)
) )
@ -543,7 +543,7 @@ CREATE TABLE `location` (
address_1 VARCHAR(50), address_1 VARCHAR(50),
address_2 VARCHAR(50), address_2 VARCHAR(50),
city VARCHAR(50), city VARCHAR(50),
state VARCHAR(2), state CHAR(2),
zip VARCHAR(9), zip VARCHAR(9),
county VARCHAR(20), county VARCHAR(20),
location_source_value VARCHAR(50) location_source_value VARCHAR(50)
@ -631,7 +631,7 @@ CREATE TABLE cost (
revenue_code_concept_id INTEGER, revenue_code_concept_id INTEGER,
reveue_code_source_value VARCHAR(50), reveue_code_source_value VARCHAR(50),
drg_concept_id INTEGER, drg_concept_id INTEGER,
drg_source_value VARCHAR(3) drg_source_value CHAR(3)
) )
; ;

20
Oracle/OMOP CDM ddl - Oracle.sql
View File

@ -49,11 +49,11 @@ CREATE TABLE concept (
domain_id VARCHAR(20) NOT NULL, domain_id VARCHAR(20) NOT NULL,
vocabulary_id VARCHAR(20) NOT NULL, vocabulary_id VARCHAR(20) NOT NULL,
concept_class_id VARCHAR(20) NOT NULL, concept_class_id VARCHAR(20) NOT NULL,
standard_concept VARCHAR(1) NULL, standard_concept CHAR(1) NULL,
concept_code VARCHAR(50) NOT NULL, concept_code VARCHAR(50) NOT NULL,
valid_start_date DATE NOT NULL, valid_start_date DATE NOT NULL,
valid_end_date DATE NOT NULL, valid_end_date DATE NOT NULL,
invalid_reason VARCHAR(1) NULL invalid_reason CHAR(1) NULL
) )
; ;
@ -97,7 +97,7 @@ CREATE TABLE concept_relationship (
relationship_id VARCHAR(20) NOT NULL, relationship_id VARCHAR(20) NOT NULL,
valid_start_date DATE NOT NULL, valid_start_date DATE NOT NULL,
valid_end_date DATE NOT NULL, valid_end_date DATE NOT NULL,
invalid_reason VARCHAR(1) NULL) invalid_reason CHAR(1) NULL)
; ;
@ -105,8 +105,8 @@ CREATE TABLE concept_relationship (
CREATE TABLE relationship ( CREATE TABLE relationship (
relationship_id VARCHAR(20) NOT NULL, relationship_id VARCHAR(20) NOT NULL,
relationship_name VARCHAR(255) NOT NULL, relationship_name VARCHAR(255) NOT NULL,
is_hierarchical VARCHAR(1) NOT NULL, is_hierarchical CHAR(1) NOT NULL,
defines_ancestry VARCHAR(1) NOT NULL, defines_ancestry CHAR(1) NOT NULL,
reverse_relationship_id VARCHAR(20) NOT NULL, reverse_relationship_id VARCHAR(20) NOT NULL,
relationship_concept_id INTEGER NOT NULL relationship_concept_id INTEGER NOT NULL
) )
@ -140,7 +140,7 @@ CREATE TABLE source_to_concept_map (
target_vocabulary_id VARCHAR(20) NOT NULL, target_vocabulary_id VARCHAR(20) NOT NULL,
valid_start_date DATE NOT NULL, valid_start_date DATE NOT NULL,
valid_end_date DATE NOT NULL, valid_end_date DATE NOT NULL,
invalid_reason VARCHAR(1) NULL invalid_reason CHAR(1) NULL
) )
; ;
@ -159,7 +159,7 @@ CREATE TABLE drug_strength (
box_size INTEGER NULL, box_size INTEGER NULL,
valid_start_date DATE NOT NULL, valid_start_date DATE NOT NULL,
valid_end_date DATE NOT NULL, valid_end_date DATE NOT NULL,
invalid_reason VARCHAR(1) NULL invalid_reason CHAR(1) NULL
) )
; ;
@ -471,7 +471,7 @@ CREATE TABLE note_nlp
nlp_system VARCHAR(250) NULL , nlp_system VARCHAR(250) NULL ,
nlp_date DATE NOT NULL , nlp_date DATE NOT NULL ,
nlp_datetime TIMESTAMP WITH TIME ZONE NULL , nlp_datetime TIMESTAMP WITH TIME ZONE NULL ,
term_exists VARCHAR(1) NULL , term_exists CHAR(1) NULL ,
term_temporal VARCHAR(50) NULL , term_temporal VARCHAR(50) NULL ,
term_modifiers VARCHAR(2000) NULL term_modifiers VARCHAR(2000) NULL
) )
@ -528,7 +528,7 @@ CREATE TABLE location
address_1 VARCHAR(50) NULL , address_1 VARCHAR(50) NULL ,
address_2 VARCHAR(50) NULL , address_2 VARCHAR(50) NULL ,
city VARCHAR(50) NULL , city VARCHAR(50) NULL ,
state VARCHAR(2) NULL , state CHAR(2) NULL ,
zip VARCHAR(9) NULL , zip VARCHAR(9) NULL ,
county VARCHAR(20) NULL , county VARCHAR(20) NULL ,
location_source_value VARCHAR(50) NULL location_source_value VARCHAR(50) NULL
@ -615,7 +615,7 @@ CREATE TABLE cost
revenue_code_concept_id INTEGER NULL , revenue_code_concept_id INTEGER NULL ,
reveue_code_source_value VARCHAR2(50) NULL , reveue_code_source_value VARCHAR2(50) NULL ,
drg_concept_id INTEGER NULL, drg_concept_id INTEGER NULL,
drg_source_value VARCHAR(3) NULL drg_source_value CHAR(3) NULL
) )
; ;

20
PostgreSQL/OMOP CDM ddl - PostgreSQL.sql
View File

@ -49,11 +49,11 @@ CREATE TABLE concept (
domain_id VARCHAR(20) NOT NULL, domain_id VARCHAR(20) NOT NULL,
vocabulary_id VARCHAR(20) NOT NULL, vocabulary_id VARCHAR(20) NOT NULL,
concept_class_id VARCHAR(20) NOT NULL, concept_class_id VARCHAR(20) NOT NULL,
standard_concept VARCHAR(1) NULL, standard_concept CHAR(1) NULL,
concept_code VARCHAR(50) NOT NULL, concept_code VARCHAR(50) NOT NULL,
valid_start_date DATE NOT NULL, valid_start_date DATE NOT NULL,
valid_end_date DATE NOT NULL, valid_end_date DATE NOT NULL,
invalid_reason VARCHAR(1) NULL invalid_reason CHAR(1) NULL
) )
; ;
@ -97,7 +97,7 @@ CREATE TABLE concept_relationship (
relationship_id VARCHAR(20) NOT NULL, relationship_id VARCHAR(20) NOT NULL,
valid_start_date DATE NOT NULL, valid_start_date DATE NOT NULL,
valid_end_date DATE NOT NULL, valid_end_date DATE NOT NULL,
invalid_reason VARCHAR(1) NULL) invalid_reason CHAR(1) NULL)
; ;
@ -105,8 +105,8 @@ CREATE TABLE concept_relationship (
CREATE TABLE relationship ( CREATE TABLE relationship (
relationship_id VARCHAR(20) NOT NULL, relationship_id VARCHAR(20) NOT NULL,
relationship_name VARCHAR(255) NOT NULL, relationship_name VARCHAR(255) NOT NULL,
is_hierarchical VARCHAR(1) NOT NULL, is_hierarchical CHAR(1) NOT NULL,
defines_ancestry VARCHAR(1) NOT NULL, defines_ancestry CHAR(1) NOT NULL,
reverse_relationship_id VARCHAR(20) NOT NULL, reverse_relationship_id VARCHAR(20) NOT NULL,
relationship_concept_id INTEGER NOT NULL relationship_concept_id INTEGER NOT NULL
) )
@ -140,7 +140,7 @@ CREATE TABLE source_to_concept_map (
target_vocabulary_id VARCHAR(20) NOT NULL, target_vocabulary_id VARCHAR(20) NOT NULL,
valid_start_date DATE NOT NULL, valid_start_date DATE NOT NULL,
valid_end_date DATE NOT NULL, valid_end_date DATE NOT NULL,
invalid_reason VARCHAR(1) NULL invalid_reason CHAR(1) NULL
) )
; ;
@ -159,7 +159,7 @@ CREATE TABLE drug_strength (
box_size INTEGER NULL, box_size INTEGER NULL,
valid_start_date DATE NOT NULL, valid_start_date DATE NOT NULL,
valid_end_date DATE NOT NULL, valid_end_date DATE NOT NULL,
invalid_reason VARCHAR(1) NULL invalid_reason CHAR(1) NULL
) )
; ;
@ -472,7 +472,7 @@ CREATE TABLE note_nlp
nlp_system VARCHAR(250) NULL , nlp_system VARCHAR(250) NULL ,
nlp_date DATE NOT NULL , nlp_date DATE NOT NULL ,
nlp_datetime TIMESTAMP NULL , nlp_datetime TIMESTAMP NULL ,
term_exists VARCHAR(1) NULL , term_exists CHAR(1) NULL ,
term_temporal VARCHAR(50) NULL , term_temporal VARCHAR(50) NULL ,
term_modifiers VARCHAR(2000) NULL term_modifiers VARCHAR(2000) NULL
) )
@ -530,7 +530,7 @@ CREATE TABLE location
address_1 VARCHAR(50) NULL , address_1 VARCHAR(50) NULL ,
address_2 VARCHAR(50) NULL , address_2 VARCHAR(50) NULL ,
city VARCHAR(50) NULL , city VARCHAR(50) NULL ,
state VARCHAR(2) NULL , state CHAR(2) NULL ,
zip VARCHAR(9) NULL , zip VARCHAR(9) NULL ,
county VARCHAR(20) NULL , county VARCHAR(20) NULL ,
location_source_value VARCHAR(50) NULL location_source_value VARCHAR(50) NULL
@ -618,7 +618,7 @@ CREATE TABLE cost
revenue_code_concept_id INTEGER NULL , revenue_code_concept_id INTEGER NULL ,
reveue_code_source_value VARCHAR(50) NULL , reveue_code_source_value VARCHAR(50) NULL ,
drg_concept_id INTEGER NULL, drg_concept_id INTEGER NULL,
drg_source_value VARCHAR(3) NULL drg_source_value CHAR(3) NULL
) )
; ;

18
Redshift/OMOP CDM ddl - Redshift.sql
View File

@ -54,7 +54,7 @@ create table concept
concept_code varchar(50) null, concept_code varchar(50) null,
valid_start_date date not null, valid_start_date date not null,
valid_end_date date not null, valid_end_date date not null,
invalid_reason varchar(1) null invalid_reason char(1) null
) )
diststyle all; diststyle all;
@ -92,7 +92,7 @@ create table concept_relationship
relationship_id varchar(20) not null, relationship_id varchar(20) not null,
valid_start_date date not null, valid_start_date date not null,
valid_end_date date not null, valid_end_date date not null,
invalid_reason varchar(1) null invalid_reason char(1) null
) )
diststyle all; diststyle all;
@ -101,8 +101,8 @@ create table relationship
( (
relationship_id varchar(20) not null, relationship_id varchar(20) not null,
relationship_name varchar(255) not null, relationship_name varchar(255) not null,
is_hierarchical varchar(1) not null, is_hierarchical char(1) not null,
defines_ancestry varchar(1) not null, defines_ancestry char(1) not null,
reverse_relationship_id varchar(20) not null, reverse_relationship_id varchar(20) not null,
relationship_concept_id integer not null relationship_concept_id integer not null
) )
@ -137,7 +137,7 @@ create table source_to_concept_map
target_vocabulary_id varchar(20) not null, target_vocabulary_id varchar(20) not null,
valid_start_date date not null, valid_start_date date not null,
valid_end_date date not null, valid_end_date date not null,
invalid_reason varchar(1) null invalid_reason char(1) null
) )
diststyle all; diststyle all;
@ -154,7 +154,7 @@ create table drug_strength
box_size integer null, box_size integer null,
valid_start_date date not null, valid_start_date date not null,
valid_end_date date not null, valid_end_date date not null,
invalid_reason varchar(1) null invalid_reason char(1) null
) )
diststyle all; diststyle all;
@ -474,7 +474,7 @@ CREATE TABLE note_nlp
nlp_system varchar(250) null , nlp_system varchar(250) null ,
nlp_date date not null , nlp_date date not null ,
nlp_datetime timestamp null , nlp_datetime timestamp null ,
term_exists varchar(1) null , term_exists char(1) null ,
term_temporal varchar(50) null , term_temporal varchar(50) null ,
term_modifiers varchar(2000) null term_modifiers varchar(2000) null
) )
@ -534,7 +534,7 @@ create table location
address_1 varchar(50) null , address_1 varchar(50) null ,
address_2 varchar(50) null , address_2 varchar(50) null ,
city varchar(50) null , city varchar(50) null ,
state varchar(2) null , state char(2) null ,
zip varchar(9) null , zip varchar(9) null ,
county varchar(20) null , county varchar(20) null ,
location_source_value varchar(50) null location_source_value varchar(50) null
@ -705,7 +705,7 @@ create table cost
revenue_code_concept_id integer null , revenue_code_concept_id integer null ,
reveue_code_source_value varchar(50) null , reveue_code_source_value varchar(50) null ,
drg_concept_id integer null, drg_concept_id integer null,
drg_source_value varchar(3) null drg_source_value char(3) null
) )
distkey(payer_plan_period_id) distkey(payer_plan_period_id)
sortkey(payer_plan_period_id); sortkey(payer_plan_period_id);

20
Sql Server/OMOP CDM ddl - SQL Server.sql
View File

@ -49,11 +49,11 @@ CREATE TABLE concept (
domain_id VARCHAR(20) NOT NULL, domain_id VARCHAR(20) NOT NULL,
vocabulary_id VARCHAR(20) NOT NULL, vocabulary_id VARCHAR(20) NOT NULL,
concept_class_id VARCHAR(20) NOT NULL, concept_class_id VARCHAR(20) NOT NULL,
standard_concept VARCHAR(1) NULL, standard_concept CHAR(1) NULL,
concept_code VARCHAR(50) NOT NULL, concept_code VARCHAR(50) NOT NULL,
valid_start_date DATE NOT NULL, valid_start_date DATE NOT NULL,
valid_end_date DATE NOT NULL, valid_end_date DATE NOT NULL,
invalid_reason VARCHAR(1) NULL invalid_reason CHAR(1) NULL
) )
; ;
@ -97,7 +97,7 @@ CREATE TABLE concept_relationship (
relationship_id VARCHAR(20) NOT NULL, relationship_id VARCHAR(20) NOT NULL,
valid_start_date DATE NOT NULL, valid_start_date DATE NOT NULL,
valid_end_date DATE NOT NULL, valid_end_date DATE NOT NULL,
invalid_reason VARCHAR(1) NULL) invalid_reason CHAR(1) NULL)
; ;
@ -105,8 +105,8 @@ CREATE TABLE concept_relationship (
CREATE TABLE relationship ( CREATE TABLE relationship (
relationship_id VARCHAR(20) NOT NULL, relationship_id VARCHAR(20) NOT NULL,
relationship_name VARCHAR(255) NOT NULL, relationship_name VARCHAR(255) NOT NULL,
is_hierarchical VARCHAR(1) NOT NULL, is_hierarchical CHAR(1) NOT NULL,
defines_ancestry VARCHAR(1) NOT NULL, defines_ancestry CHAR(1) NOT NULL,
reverse_relationship_id VARCHAR(20) NOT NULL, reverse_relationship_id VARCHAR(20) NOT NULL,
relationship_concept_id INTEGER NOT NULL relationship_concept_id INTEGER NOT NULL
) )
@ -140,7 +140,7 @@ CREATE TABLE source_to_concept_map (
target_vocabulary_id VARCHAR(20) NOT NULL, target_vocabulary_id VARCHAR(20) NOT NULL,
valid_start_date DATE NOT NULL, valid_start_date DATE NOT NULL,
valid_end_date DATE NOT NULL, valid_end_date DATE NOT NULL,
invalid_reason VARCHAR(1) NULL invalid_reason CHAR(1) NULL
) )
; ;
@ -159,7 +159,7 @@ CREATE TABLE drug_strength (
box_size INTEGER NULL, box_size INTEGER NULL,
valid_start_date DATE NOT NULL, valid_start_date DATE NOT NULL,
valid_end_date DATE NOT NULL, valid_end_date DATE NOT NULL,
invalid_reason VARCHAR(1) NULL invalid_reason CHAR(1) NULL
) )
; ;
@ -471,7 +471,7 @@ CREATE TABLE note_nlp
nlp_system VARCHAR(250) NULL , nlp_system VARCHAR(250) NULL ,
nlp_date DATE NOT NULL , nlp_date DATE NOT NULL ,
nlp_datetime DATETIME2 NULL , nlp_datetime DATETIME2 NULL ,
term_exists VARCHAR(1) NULL , term_exists CHAR(1) NULL ,
term_temporal VARCHAR(50) NULL , term_temporal VARCHAR(50) NULL ,
term_modifiers VARCHAR(2000) NULL term_modifiers VARCHAR(2000) NULL
) )
@ -529,7 +529,7 @@ CREATE TABLE location
address_1 VARCHAR(50) NULL , address_1 VARCHAR(50) NULL ,
address_2 VARCHAR(50) NULL , address_2 VARCHAR(50) NULL ,
city VARCHAR(50) NULL , city VARCHAR(50) NULL ,
state VARCHAR(2) NULL , state CHAR(2) NULL ,
zip VARCHAR(9) NULL , zip VARCHAR(9) NULL ,
county VARCHAR(20) NULL , county VARCHAR(20) NULL ,
location_source_value VARCHAR(50) NULL location_source_value VARCHAR(50) NULL
@ -615,7 +615,7 @@ CREATE TABLE cost
revenue_code_concept_id INTEGER NULL , revenue_code_concept_id INTEGER NULL ,
reveue_code_source_value VARCHAR(50) NULL, reveue_code_source_value VARCHAR(50) NULL,
drg_concept_id INTEGER NULL, drg_concept_id INTEGER NULL,
drg_source_value VARCHAR(3) NULL drg_source_value CHAR(3) NULL
) )
; ;