Fixes to tooling support
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title: "**OMOP CDM v5.4 Detailed Tooling Support**"
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output:
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html_document:
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toc: TRUE
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toc_float: TRUE
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---
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# Introduction
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This tables below contain an overview of which standard OHDSI tools make use of which OMOP CDM fields.
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The goal is to inform ETL developers, tooling developers and CDM extensions.
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- For ETL developers it helps to have guidance on which fieds to prioritise in the mapping. Most value will be gained from populating fields support across the OHDSI tooling.
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- For OHDSI tooling developers, this page provides insight in the gaps of support and can drive future development efforts.
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- For CDM extenstions, it helps to known what it means for an OMOP CDM table/field to be part of the standard. In other words: what OHDSI tooling do we at least expect to support the new extensions?
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Currently four OHDSI tools have been evaluated: DataQualityDashboard, Achilles, Atlas (Data Sources and Cohort creation) and Feature Extraction.
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## Criteria
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Tool | Supports CDM Field if | Link to resource used
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--- | --- | ---
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DataQualityDashboard | Part of Field Level checks | https://github.com/OHDSI/DataQualityDashboard/blob/main/inst/csv/OMOP_CDMv5.4_Field_Level.csv
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Achilles | Covered by at least one Achilles analysis | https://github.com/OHDSI/Achilles/blob/main/inst/csv/achilles/achilles_analysis_details.csv
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Atlas Data Sources | A statistic based on the field is shown in a 'Data Sources' visualisation | https://atlas-demo.ohdsi.org/
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Atlas Cohort | Used in te Atlas User Interface for cohort definition criteria (directly, or via 'Add attribute') | https://atlas-demo.ohdsi.org/
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Feature Extraction | Used in one of the Feature Extraction analyses | https://github.com/OHDSI/FeatureExtraction/blob/main/inst/csv/
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General criteria:
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- `r emoji::emoji("heavy_check_mark")` if the field essential for OMOP CDM definition (Primary Key, Foreign Key) e.g. person_id not explicitly used, but essential. (if the PK is marked as False, it typically means the whole table is not used in the tool e.g. `_source_value` fields that are used for traceability in ETL)
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- `r emoji::emoji("exclamation")` if field is used by the tool, but not in a meaningful way. e.g. `provider_id` in Achilles only checked for a valid foreign key to the provider table.
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# Tooling Support for OMOP fields
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**Abbrevations** |
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--- | ---
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**PK** | Primary Key
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**SV** | Source Value (for data quality / etl validation)
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**BC** | Backwards Compatibility, to support CDM <v5.4
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**FC** | Forwards Compatibility, to easy support for CDM v6 in the future.
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## Person
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cdmTableName | cdmFieldName | Special Fields | DQD (v1.0) | Achilles (v1.7) | Atlas Cohort (v2.10) | Atlas Cohort (v2.12) | Atlas Data Sources (v2.12) | Feature Extraction (v3.2) | Comment
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--- | --- | :---: | :---: | :---: | :---: | :---: | :---: | :---: | ---
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PERSON | person_id | PK | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` |
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PERSON | gender_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` |
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PERSON | year_of_birth | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` |
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PERSON | month_of_birth | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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PERSON | day_of_birth | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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PERSON | birth_datetime | FC | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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PERSON | race_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` |
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PERSON | ethnicity_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` |
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PERSON | location_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | Achilles only does FK check
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PERSON | provider_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | Achilles only does FK check
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PERSON | care_site_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | Achilles only does FK check
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PERSON | person_source_value | SV | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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PERSON | gender_source_value | SV | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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PERSON | gender_source_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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PERSON | race_source_value | SV | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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PERSON | race_source_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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PERSON | ethnicity_source_value | SV | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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PERSON | ethnicity_source_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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## Observation Period
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cdmTableName | cdmFieldName | Special Fields | DQD (v1.0) | Achilles (v1.7) | Atlas Cohort (v2.10) | Atlas Cohort (v2.12) | Atlas Data Sources (v2.12) | Feature Extraction (v3.2) | Comment
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--- | --- | :---: | :---: | :---: | :---: | :---: | :---: | :---: | ---
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OBSERVATION_PERIOD | observation_period_id | PK | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` |
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OBSERVATION_PERIOD | person_id | Pid | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` |
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OBSERVATION_PERIOD | observation_period_start_date | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` |
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OBSERVATION_PERIOD | observation_period_end_date | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` |
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OBSERVATION_PERIOD | period_type_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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## Visit Occurrence
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cdmTableName | cdmFieldName | Special Fields | DQD (v1.0) | Achilles (v1.7) | Atlas Cohort (v2.10) | Atlas Cohort (v2.12) | Atlas Data Sources (v2.12) | Feature Extraction (v3.2) | Comment
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--- | --- | :---: | :---: | :---: | :---: | :---: | :---: | :---: | ---
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VISIT_OCCURRENCE | visit_occurrence_id | PK | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` |
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VISIT_OCCURRENCE | person_id | Pid | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` |
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VISIT_OCCURRENCE | visit_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` |
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VISIT_OCCURRENCE | visit_source_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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VISIT_OCCURRENCE | visit_source_value | SV | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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VISIT_OCCURRENCE | visit_start_date | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | Achilles check 1900
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VISIT_OCCURRENCE | visit_start_datetime | FC | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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VISIT_OCCURRENCE | visit_end_date | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("heavy_check_mark")` |
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VISIT_OCCURRENCE | visit_end_datetime | FC | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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VISIT_OCCURRENCE | visit_type_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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VISIT_OCCURRENCE | provider_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | Atlas uses provider.specialty_concept_id
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VISIT_OCCURRENCE | care_site_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | Achilles only does FK check, Atlas uses care_site.place_of_service_concept_id
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VISIT_OCCURRENCE | admitted_from_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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VISIT_OCCURRENCE | admitted_from_source_value | SV | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | Achilles check 1900
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VISIT_OCCURRENCE | discharged_to_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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VISIT_OCCURRENCE | discharged_to_source_value | SV | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | Achilles check 1900
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VISIT_OCCURRENCE | preceding_visit_occurrence_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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## Episode
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cdmTableName | cdmFieldName | Special Fields | DQD (v1.0) | Achilles (v1.7) | Atlas Cohort (v2.10) | Atlas Cohort (v2.12) | Atlas Data Sources (v2.12) | Feature Extraction (v3.2) | Comment
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--- | --- | :---: | :---: | :---: | :---: | :---: | :---: | :---: | ---
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EPISODE | episode_id | PK | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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EPISODE | person_id | Pid | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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EPISODE | episode_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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EPISODE | episode_start_date | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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EPISODE | episode_start_datetime | FC | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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EPISODE | episode_end_date | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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EPISODE | episode_end_datetime | FC | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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EPISODE | episode_parent_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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EPISODE | episode_number | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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EPISODE | episode_object_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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EPISODE | episode_type_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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EPISODE | episode_source_value | SV | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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EPISODE | episode_source_concept_id | | `r emoji::emoji("heavy_check_mark")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` | `r emoji::emoji("exclamation")` |
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|
||||||
This was an effort by the CDM Working Group in 2022.
|
|
||||||
*Credits: Clair Blacketer, Maxim Moinat, Nitin Park
|
|
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|
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|
||||||
cdmTableName | cdmFieldName | Special Fields | DQD (v1.0) | Achilles (v1.7) | Atlas Cohort (v2.10) | Atlas Cohort (v2.12) | Atlas Data Sources (v2.12) | Feature Extraction (v3.2) | Comment
|
|
||||||
--- | --- | --- | --- | --- | --- | --- | --- | --- | ---
|
|
||||||
PERSON | person_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
PERSON | gender_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
PERSON | year_of_birth | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
PERSON | month_of_birth | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PERSON | day_of_birth | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PERSON | birth_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PERSON | race_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
PERSON | ethnicity_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
PERSON | location_id | | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles only does FK check
|
|
||||||
PERSON | provider_id | | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles only does FK check
|
|
||||||
PERSON | care_site_id | | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles only does FK check
|
|
||||||
PERSON | person_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PERSON | gender_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PERSON | gender_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PERSON | race_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PERSON | race_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PERSON | ethnicity_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PERSON | ethnicity_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
OBSERVATION_PERIOD | observation_period_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
OBSERVATION_PERIOD | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
OBSERVATION_PERIOD | observation_period_start_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
OBSERVATION_PERIOD | observation_period_end_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
OBSERVATION_PERIOD | period_type_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
VISIT_OCCURRENCE | visit_occurrence_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
VISIT_OCCURRENCE | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
VISIT_OCCURRENCE | visit_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
VISIT_OCCURRENCE | visit_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
VISIT_OCCURRENCE | visit_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
VISIT_OCCURRENCE | visit_start_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE | Achilles check 1900
|
|
||||||
VISIT_OCCURRENCE | visit_start_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
VISIT_OCCURRENCE | visit_end_date | | TRUE | TRUE | TRUE | TRUE | FALSE | TRUE |
|
|
||||||
VISIT_OCCURRENCE | visit_end_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
VISIT_OCCURRENCE | visit_type_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
VISIT_OCCURRENCE | provider_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE | Atlas uses provider.specialty_concept_id
|
|
||||||
VISIT_OCCURRENCE | care_site_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles only does FK check, Atlas uses care_site.place_of_service_concept_id
|
|
||||||
VISIT_OCCURRENCE | admitted_from_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
VISIT_OCCURRENCE | admitted_from_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
VISIT_OCCURRENCE | discharged_to_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
VISIT_OCCURRENCE | discharged_to_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
VISIT_OCCURRENCE | preceding_visit_occurrence_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CONDITION_OCCURRENCE | condition_occurrence_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
CONDITION_OCCURRENCE | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
CONDITION_OCCURRENCE | condition_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
CONDITION_OCCURRENCE | condition_start_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
CONDITION_OCCURRENCE | condition_start_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CONDITION_OCCURRENCE | condition_end_date | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles only checks end_date < start_date
|
|
||||||
CONDITION_OCCURRENCE | condition_end_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CONDITION_OCCURRENCE | condition_type_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
|
||||||
CONDITION_OCCURRENCE | condition_status_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
CONDITION_OCCURRENCE | stop_reason | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE | Atlas has a 'contains' free-text filter on stop_reason
|
|
||||||
CONDITION_OCCURRENCE | provider_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles only does FK check
|
|
||||||
CONDITION_OCCURRENCE | visit_occurrence_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | TRUE | Achilles only does FK check, FeatureExtraction for HDPS
|
|
||||||
CONDITION_OCCURRENCE | visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CONDITION_OCCURRENCE | condition_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
CONDITION_OCCURRENCE | condition_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
CONDITION_OCCURRENCE | condition_status_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
PROCEDURE_OCCURRENCE | procedure_occurrence_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
PROCEDURE_OCCURRENCE | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
PROCEDURE_OCCURRENCE | procedure_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
PROCEDURE_OCCURRENCE | procedure_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
PROCEDURE_OCCURRENCE | procedure_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PROCEDURE_OCCURRENCE | procedure_end_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PROCEDURE_OCCURRENCE | procedure_end_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PROCEDURE_OCCURRENCE | procedure_type_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
|
||||||
PROCEDURE_OCCURRENCE | modifier_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
PROCEDURE_OCCURRENCE | quantity | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
PROCEDURE_OCCURRENCE | provider_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles only does FK check
|
|
||||||
PROCEDURE_OCCURRENCE | visit_occurrence_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | TRUE | Achilles only does FK check, FeatureExtraction for HDPS
|
|
||||||
PROCEDURE_OCCURRENCE | visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PROCEDURE_OCCURRENCE | procedure_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
PROCEDURE_OCCURRENCE | procedure_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
PROCEDURE_OCCURRENCE | modifier_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
FACT_RELATIONSHIP | domain_concept_id_1 | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
FACT_RELATIONSHIP | fact_id_1 | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
FACT_RELATIONSHIP | domain_concept_id_2 | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
FACT_RELATIONSHIP | fact_id_2 | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
FACT_RELATIONSHIP | relationship_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PROVIDER | provider_id | PK | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
PROVIDER | provider_name | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PROVIDER | npi | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PROVIDER | dea | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PROVIDER | specialty_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE | Atlas: via visit occurrence
|
|
||||||
PROVIDER | care_site_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PROVIDER | year_of_birth | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PROVIDER | gender_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PROVIDER | provider_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PROVIDER | specialty_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
PROVIDER | specialty_source_concept_id | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PROVIDER | gender_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
PROVIDER | gender_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DRUG_EXPOSURE | drug_exposure_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
DRUG_EXPOSURE | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
DRUG_EXPOSURE | drug_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
DRUG_EXPOSURE | drug_exposure_start_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
DRUG_EXPOSURE | drug_exposure_start_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DRUG_EXPOSURE | drug_exposure_end_date | | TRUE | TRUE* | TRUE | TRUE | FALSE | TRUE | Achilles only checks end_date < start_date
|
|
||||||
DRUG_EXPOSURE | drug_exposure_end_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DRUG_EXPOSURE | verbatim_end_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DRUG_EXPOSURE | drug_type_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
|
||||||
DRUG_EXPOSURE | stop_reason | BC | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DRUG_EXPOSURE | refills | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DRUG_EXPOSURE | quantity | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DRUG_EXPOSURE | days_supply | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE | Needed for drug era derivation
|
|
||||||
DRUG_EXPOSURE | sig | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DRUG_EXPOSURE | route_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DRUG_EXPOSURE | lot_number | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DRUG_EXPOSURE | provider_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles only does FK check
|
|
||||||
DRUG_EXPOSURE | visit_occurrence_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles only does FK check
|
|
||||||
DRUG_EXPOSURE | visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DRUG_EXPOSURE | drug_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
DRUG_EXPOSURE | drug_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DRUG_EXPOSURE | route_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
DRUG_EXPOSURE | dose_unit_source_value | BC | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DEVICE_EXPOSURE | device_exposure_id | PK | TRUE | TRUE | TRUE | TRUE | FALSE | TRUE |
|
|
||||||
DEVICE_EXPOSURE | person_id | Pid | TRUE | TRUE | TRUE | TRUE | FALSE | TRUE |
|
|
||||||
DEVICE_EXPOSURE | device_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | TRUE |
|
|
||||||
DEVICE_EXPOSURE | device_exposure_start_date | | TRUE | TRUE | TRUE | TRUE | FALSE | TRUE |
|
|
||||||
DEVICE_EXPOSURE | device_exposure_start_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DEVICE_EXPOSURE | device_exposure_end_date | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DEVICE_EXPOSURE | device_exposure_end_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DEVICE_EXPOSURE | device_type_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DEVICE_EXPOSURE | unique_device_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DEVICE_EXPOSURE | production_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DEVICE_EXPOSURE | quantity | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DEVICE_EXPOSURE | provider_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DEVICE_EXPOSURE | visit_occurrence_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DEVICE_EXPOSURE | visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DEVICE_EXPOSURE | device_source_value | | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
DEVICE_EXPOSURE | device_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DEVICE_EXPOSURE | unit_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DEVICE_EXPOSURE | unit_source_value | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DEVICE_EXPOSURE | unit_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
MEASUREMENT | measurement_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
MEASUREMENT | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
MEASUREMENT | measurement_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
MEASUREMENT | measurement_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
MEASUREMENT | measurement_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
MEASUREMENT | measurement_time | BC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
MEASUREMENT | measurement_type_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
|
||||||
MEASUREMENT | operator_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
|
||||||
MEASUREMENT | value_as_number | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
MEASUREMENT | value_as_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
|
||||||
MEASUREMENT | unit_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
MEASUREMENT | range_low | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
MEASUREMENT | range_high | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
MEASUREMENT | provider_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
MEASUREMENT | visit_occurrence_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
MEASUREMENT | visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
MEASUREMENT | measurement_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
MEASUREMENT | measurement_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
MEASUREMENT | unit_source_value | SV | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles check 1900
|
|
||||||
MEASUREMENT | unit_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
MEASUREMENT | value_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
MEASUREMENT | measurement_event_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
MEASUREMENT | meas_event_field_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
OBSERVATION | observation_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
OBSERVATION | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
OBSERVATION | observation_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
OBSERVATION | observation_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
OBSERVATION | observation_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
OBSERVATION | observation_type_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
|
||||||
OBSERVATION | value_as_number | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
OBSERVATION | value_as_string | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
OBSERVATION | value_as_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
|
||||||
OBSERVATION | qualifier_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
|
||||||
OBSERVATION | unit_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
OBSERVATION | provider_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
OBSERVATION | visit_occurrence_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
OBSERVATION | visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
OBSERVATION | observation_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
OBSERVATION | observation_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
OBSERVATION | unit_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
OBSERVATION | qualifier_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
OBSERVATION | value_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
OBSERVATION | observation_event_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
OBSERVATION | obs_event_field_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DEATH | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
|
||||||
DEATH | death_date | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
|
||||||
DEATH | death_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DEATH | death_type_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | FALSE |
|
|
||||||
DEATH | cause_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DEATH | cause_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
DEATH | cause_source_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
NOTE | note_id | PK | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE | person_id | Pid | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE | note_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE | note_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE | note_type_concept_id | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE | note_class_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE | note_title | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE | note_text | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE | encoding_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE | language_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE | provider_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE | visit_occurrence_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE | visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE | note_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE | note_event_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE | note_event_field_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE_NLP | note_nlp_id | PK | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE_NLP | note_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE_NLP | section_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE_NLP | snippet | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE_NLP | offset | | FALSE | FALSE | FALSE | FALSE | FALSE | FALSE | Offset is a SQL-keyword, causing syntax errors
|
|
||||||
NOTE_NLP | lexical_variant | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE_NLP | note_nlp_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE_NLP | note_nlp_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE_NLP | nlp_system | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE_NLP | nlp_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE_NLP | nlp_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE_NLP | term_exists | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE_NLP | term_temporal | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
NOTE_NLP | term_modifiers | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
SPECIMEN | specimen_id | PK | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
SPECIMEN | person_id | Pid | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
SPECIMEN | specimen_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
SPECIMEN | specimen_type_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
SPECIMEN | specimen_date | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
SPECIMEN | specimen_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
SPECIMEN | quantity | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
SPECIMEN | unit_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
SPECIMEN | anatomic_site_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
SPECIMEN | disease_status_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
SPECIMEN | specimen_source_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
SPECIMEN | specimen_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
SPECIMEN | unit_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
SPECIMEN | anatomic_site_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
SPECIMEN | disease_status_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
VISIT_DETAIL | visit_detail_id | PK | TRUE | TRUE | FALSE | TRUE | FALSE | FALSE |
|
|
||||||
VISIT_DETAIL | person_id | Pid | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
VISIT_DETAIL | visit_detail_concept_id | | TRUE | TRUE | FALSE | TRUE | FALSE | FALSE |
|
|
||||||
VISIT_DETAIL | visit_detail_start_date | | TRUE | TRUE | FALSE | TRUE | FALSE | FALSE |
|
|
||||||
VISIT_DETAIL | visit_detail_start_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
VISIT_DETAIL | visit_detail_end_date | | TRUE | TRUE | FALSE | TRUE | FALSE | FALSE |
|
|
||||||
VISIT_DETAIL | visit_detail_end_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
VISIT_DETAIL | visit_detail_type_concept_id | | TRUE | FALSE | FALSE | TRUE | FALSE | FALSE |
|
|
||||||
VISIT_DETAIL | provider_id | | TRUE | FALSE | FALSE | TRUE | FALSE | FALSE |
|
|
||||||
VISIT_DETAIL | care_site_id | | TRUE | TRUE* | FALSE | TRUE | FALSE | FALSE | Achilles only does FK check
|
|
||||||
VISIT_DETAIL | visit_detail_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
VISIT_DETAIL | visit_detail_source_concept_id | | TRUE | TRUE | FALSE | TRUE | FALSE | FALSE |
|
|
||||||
VISIT_DETAIL | admitted_from_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
VISIT_DETAIL | admitted_from_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
VISIT_DETAIL | discharged_to_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
VISIT_DETAIL | discharged_to_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
VISIT_DETAIL | preceding_visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
VISIT_DETAIL | parent_visit_detail_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
VISIT_DETAIL | visit_occurrence_id | | TRUE | FALSE | FALSE | TRUE | FALSE | FALSE |
|
|
||||||
LOCATION | location_id | PK | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
LOCATION | address_1 | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
LOCATION | address_2 | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
LOCATION | city | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
LOCATION | state | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
LOCATION | zip | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
LOCATION | county | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
LOCATION | location_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
LOCATION | country_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
LOCATION | country_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
LOCATION | latitude | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
LOCATION | longitude | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CARE_SITE | care_site_id | PK | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
CARE_SITE | care_site_name | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CARE_SITE | place_of_service_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE | Atlas: via visit occurrence
|
|
||||||
CARE_SITE | location_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
CARE_SITE | care_site_source_value | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CARE_SITE | place_of_service_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PAYER_PLAN_PERIOD | payer_plan_period_id | PK | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
PAYER_PLAN_PERIOD | person_id | Pid | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
PAYER_PLAN_PERIOD | payer_plan_period_start_date | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
PAYER_PLAN_PERIOD | payer_plan_period_end_date | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
PAYER_PLAN_PERIOD | payer_concept_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles check 1900
|
|
||||||
PAYER_PLAN_PERIOD | payer_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
PAYER_PLAN_PERIOD | payer_source_concept_id | | TRUE | TRUE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
PAYER_PLAN_PERIOD | plan_concept_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles check 1900
|
|
||||||
PAYER_PLAN_PERIOD | plan_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
PAYER_PLAN_PERIOD | plan_source_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
PAYER_PLAN_PERIOD | sponsor_concept_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles check 1900
|
|
||||||
PAYER_PLAN_PERIOD | sponsor_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
PAYER_PLAN_PERIOD | sponsor_source_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
PAYER_PLAN_PERIOD | family_source_value | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
PAYER_PLAN_PERIOD | stop_reason_concept_id | | TRUE | TRUE* | TRUE | TRUE | FALSE | FALSE | Achilles check 1900
|
|
||||||
PAYER_PLAN_PERIOD | stop_reason_source_value | SV | TRUE | TRUE* | FALSE | FALSE | FALSE | FALSE | Achilles check 1900
|
|
||||||
PAYER_PLAN_PERIOD | stop_reason_source_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
COST | cost_id | PK | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | cost_event_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | cost_domain_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | cost_type_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | currency_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | total_charge | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | total_cost | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | total_paid | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | paid_by_payer | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | paid_by_patient | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | paid_patient_copay | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | paid_patient_coinsurance | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | paid_patient_deductible | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | paid_by_primary | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | paid_ingredient_cost | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | paid_dispensing_fee | | TRUE | TRUE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | payer_plan_period_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | amount_allowed | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | revenue_code_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | revenue_code_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | drg_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
COST | drg_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
DRUG_ERA | drug_era_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
DRUG_ERA | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
DRUG_ERA | drug_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
DRUG_ERA | drug_era_start_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
DRUG_ERA | drug_era_end_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
DRUG_ERA | drug_exposure_count | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DRUG_ERA | gap_days | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DOSE_ERA | dose_era_id | PK | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DOSE_ERA | person_id | Pid | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DOSE_ERA | drug_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DOSE_ERA | unit_concept_id | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DOSE_ERA | dose_value | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DOSE_ERA | dose_era_start_date | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
DOSE_ERA | dose_era_end_date | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
CONDITION_ERA | condition_era_id | PK | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
CONDITION_ERA | person_id | Pid | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
CONDITION_ERA | condition_concept_id | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
CONDITION_ERA | condition_era_start_date | | TRUE | TRUE | TRUE | TRUE | TRUE | TRUE |
|
|
||||||
CONDITION_ERA | condition_era_end_date | | TRUE | TRUE | TRUE | TRUE | FALSE | TRUE |
|
|
||||||
CONDITION_ERA | condition_occurrence_count | | TRUE | FALSE | TRUE | TRUE | FALSE | FALSE |
|
|
||||||
EPISODE | episode_id | PK | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
EPISODE | person_id | Pid | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
EPISODE | episode_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
EPISODE | episode_start_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
EPISODE | episode_start_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
EPISODE | episode_end_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
EPISODE | episode_end_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
EPISODE | episode_parent_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
EPISODE | episode_number | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
EPISODE | episode_object_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
EPISODE | episode_type_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
EPISODE | episode_source_value | SV | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
EPISODE | episode_source_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
EPISODE_EVENT | episode_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
EPISODE_EVENT | event_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
EPISODE_EVENT | episode_event_field_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
METADATA | metadata_id | PK | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
METADATA | metadata_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
METADATA | metadata_type_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
METADATA | name | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
METADATA | value_as_string | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
METADATA | value_as_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
METADATA | value_as_number | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
METADATA | metadata_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
METADATA | metadata_datetime | FC | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CDM_SOURCE | cdm_source_name | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CDM_SOURCE | cdm_source_abbreviation | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CDM_SOURCE | cdm_holder | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CDM_SOURCE | source_description | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CDM_SOURCE | source_documentation_reference | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CDM_SOURCE | cdm_etl_reference | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CDM_SOURCE | source_release_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CDM_SOURCE | cdm_release_date | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CDM_SOURCE | cdm_version | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CDM_SOURCE | cdm_version_concept_id | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
||||||
CDM_SOURCE | vocabulary_version | | TRUE | FALSE | FALSE | FALSE | FALSE | FALSE |
|
|
Loading…
Reference in New Issue