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OMOP
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closes #671

This commit is contained in:
Clair Blacketer 2024-04-29 09:21:59 -04:00
parent c721007114
commit 6eaeab4e6a
2 changed files with 2 additions and 2 deletions
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2
inst/csv/OMOP_CDMv5.3_Field_Level.csv
View File

@ -285,7 +285,7 @@ payer_plan_period,payer_source_concept_id,No,integer,NA,If the source data codes
payer_plan_period,plan_concept_id,No,integer,This field represents the specific health benefit Plan the Person is enrolled in.,"Map the Plan directly to a standard CONCEPT_ID in the 'Plan' vocabulary ([Accepted Concepts](http://athena.ohdsi.org/search-terms/terms?domain=Plan&standardConcept=Standard&page=1&pageSize=15&query=)). This vocabulary is not exhaustive so if there is a value missing, please see the [custom concepts](https://ohdsi.github.io/CommonDataModel/customConcepts.html) page.",No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,plan_concept_id,No,integer,This field represents the specific health benefit Plan the Person is enrolled in.,"Map the Plan directly to a standard CONCEPT_ID in the 'Plan' vocabulary ([Accepted Concepts](http://athena.ohdsi.org/search-terms/terms?domain=Plan&standardConcept=Standard&page=1&pageSize=15&query=)). This vocabulary is not exhaustive so if there is a value missing, please see the [custom concepts](https://ohdsi.github.io/CommonDataModel/customConcepts.html) page.",No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA
payer_plan_period,plan_source_value,No,varchar(50),This is the health benefit Plan of the Person as it appears in the source data.,NA,No,No,NA,NA,NA,NA,NA payer_plan_period,plan_source_value,No,varchar(50),This is the health benefit Plan of the Person as it appears in the source data.,NA,No,No,NA,NA,NA,NA,NA
payer_plan_period,plan_source_concept_id,No,integer,NA,If the source data codes the Plan in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,plan_source_concept_id,No,integer,NA,If the source data codes the Plan in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA
payer_plan_period,sponsor_concept_id,No,integer,"This field represents the sponsor of the Plan who finances the Plan. This includes self-insured, small group health plan and large group health plan.",Map the sponsor directly to a standard CONCEPT_ID. If one does not exists please contact the vocabulary team. There is no global controlled vocabulary available for this information. The point is to stratify on this information and identify if Persons have the same sponsor though the name of the sponsor is not necessary. [Accepted Concepts](http://athena.ohdsi.org/search-terms/terms?domain=Sponsor&standardConcept=Standard&page=1&pageSize=15&query=).,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,sponsor_concept_id,No,integer,"This field represents the sponsor of the Plan who finances the Plan. This includes self-insured, small group health plan and large group health plan.","Map the sponsor directly to a standard CONCEPT_ID with the domain_id of 'Sponsor' ([Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Sponsor&standardConcept=Standard&page=1&pageSize=15&query=)). This vocabulary is not exhaustive so if there is a value missing, please see the [custom concepts](https://ohdsi.github.io/CommonDataModel/customConcepts.html) page.",No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA
payer_plan_period,sponsor_source_value,No,varchar(50),The Plan sponsor as it appears in the source data.,NA,No,No,NA,NA,NA,NA,NA payer_plan_period,sponsor_source_value,No,varchar(50),The Plan sponsor as it appears in the source data.,NA,No,No,NA,NA,NA,NA,NA
payer_plan_period,sponsor_source_concept_id,No,integer,NA,If the source data codes the sponsor in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,sponsor_source_concept_id,No,integer,NA,If the source data codes the sponsor in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA
payer_plan_period,family_source_value,No,varchar(50),The common identifier for all people (often a family) that covered by the same policy.,Often these are the common digits of the enrollment id of the policy members.,No,No,NA,NA,NA,NA,NA payer_plan_period,family_source_value,No,varchar(50),The common identifier for all people (often a family) that covered by the same policy.,Often these are the common digits of the enrollment id of the policy members.,No,No,NA,NA,NA,NA,NA

1 cdmTableName cdmFieldName isRequired cdmDatatype userGuidance etlConventions isPrimaryKey isForeignKey fkTableName fkFieldName fkDomain fkClass unique DQ identifiers
285 cost revenue_code_source_value No varchar(50) Revenue codes are a method to charge for a class of procedures and conditions in the U.S. hospital system. NA No No NA NA NA NA NA
286 cost drg_concept_id No integer NA NA No Yes CONCEPT CONCEPT_ID NA NA NA
287 cost drg_source_value No varchar(3) Diagnosis Related Groups are US codes used to classify hospital cases into one of approximately 500 groups. NA No No NA NA NA NA NA
288 drug_era drug_era_id Yes integer NA NA Yes No NA NA NA NA NA
289 drug_era person_id Yes integer NA NA No Yes PERSON PERSON_ID NA NA NA
290 drug_era drug_concept_id Yes integer The drug_concept_id should conform to the concept class 'ingredient' as the drug_era is an era of time where a person is exposed to a particular drug ingredient. NA No Yes CONCEPT CONCEPT_ID Drug Ingredient NA
291 drug_era drug_era_start_date Yes date NA The Drug Era Start Date is the start date of the first Drug Exposure for a given ingredient, with at least 31 days since the previous exposure. No No NA NA NA NA NA

2
inst/csv/OMOP_CDMv5.4_Field_Level.csv
View File

@ -303,7 +303,7 @@ payer_plan_period,payer_source_concept_id,No,integer,NA,If the source data codes
payer_plan_period,plan_concept_id,No,integer,This field represents the specific health benefit Plan the Person is enrolled in.,"Map the Plan directly to a standard CONCEPT_ID in the 'Plan' vocabulary ([Accepted Concepts](http://athena.ohdsi.org/search-terms/terms?domain=Plan&standardConcept=Standard&page=1&pageSize=15&query=)). This vocabulary is not exhaustive so if there is a value missing, please see the [custom concepts](https://ohdsi.github.io/CommonDataModel/customConcepts.html) page.",No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,plan_concept_id,No,integer,This field represents the specific health benefit Plan the Person is enrolled in.,"Map the Plan directly to a standard CONCEPT_ID in the 'Plan' vocabulary ([Accepted Concepts](http://athena.ohdsi.org/search-terms/terms?domain=Plan&standardConcept=Standard&page=1&pageSize=15&query=)). This vocabulary is not exhaustive so if there is a value missing, please see the [custom concepts](https://ohdsi.github.io/CommonDataModel/customConcepts.html) page.",No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA
payer_plan_period,plan_source_value,No,varchar(50),This is the health benefit Plan of the Person as it appears in the source data.,NA,No,No,NA,NA,NA,NA,NA payer_plan_period,plan_source_value,No,varchar(50),This is the health benefit Plan of the Person as it appears in the source data.,NA,No,No,NA,NA,NA,NA,NA
payer_plan_period,plan_source_concept_id,No,integer,NA,If the source data codes the Plan in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,plan_source_concept_id,No,integer,NA,If the source data codes the Plan in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA
payer_plan_period,sponsor_concept_id,No,integer,"This field represents the sponsor of the Plan who finances the Plan. This includes self-insured, small group health plan and large group health plan.",Map the sponsor directly to a standard CONCEPT_ID. If one does not exists please contact the vocabulary team. There is no global controlled vocabulary available for this information. The point is to stratify on this information and identify if Persons have the same sponsor though the name of the sponsor is not necessary. [Accepted Concepts](http://athena.ohdsi.org/search-terms/terms?domain=Sponsor&standardConcept=Standard&page=1&pageSize=15&query=).,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,sponsor_concept_id,No,integer,"This field represents the sponsor of the Plan who finances the Plan. This includes self-insured, small group health plan and large group health plan.","Map the sponsor directly to a standard CONCEPT_ID with the domain_id of 'Sponsor' ([Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Sponsor&standardConcept=Standard&page=1&pageSize=15&query=)). This vocabulary is not exhaustive so if there is a value missing, please see the [custom concepts](https://ohdsi.github.io/CommonDataModel/customConcepts.html) page.",No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA
payer_plan_period,sponsor_source_value,No,varchar(50),The Plan sponsor as it appears in the source data.,NA,No,No,NA,NA,NA,NA,NA payer_plan_period,sponsor_source_value,No,varchar(50),The Plan sponsor as it appears in the source data.,NA,No,No,NA,NA,NA,NA,NA
payer_plan_period,sponsor_source_concept_id,No,integer,NA,If the source data codes the sponsor in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,sponsor_source_concept_id,No,integer,NA,If the source data codes the sponsor in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA
payer_plan_period,family_source_value,No,varchar(50),The common identifier for all people (often a family) that covered by the same policy.,Often these are the common digits of the enrollment id of the policy members.,No,No,NA,NA,NA,NA,NA payer_plan_period,family_source_value,No,varchar(50),The common identifier for all people (often a family) that covered by the same policy.,Often these are the common digits of the enrollment id of the policy members.,No,No,NA,NA,NA,NA,NA

1 cdmTableName cdmFieldName isRequired cdmDatatype userGuidance etlConventions isPrimaryKey isForeignKey fkTableName fkFieldName fkDomain fkClass unique DQ identifiers
303 cost revenue_code_source_value No varchar(50) Revenue codes are a method to charge for a class of procedures and conditions in the U.S. hospital system. NA No No NA NA NA NA NA
304 cost drg_concept_id No integer NA NA No Yes CONCEPT CONCEPT_ID NA NA NA
305 cost drg_source_value No varchar(3) Diagnosis Related Groups are US codes used to classify hospital cases into one of approximately 500 groups. NA No No NA NA NA NA NA
306 drug_era drug_era_id Yes integer NA NA Yes No NA NA NA NA NA
307 drug_era person_id Yes integer NA NA No Yes PERSON PERSON_ID NA NA NA
308 drug_era drug_concept_id Yes integer The drug_concept_id should conform to the concept class 'ingredient' as the drug_era is an era of time where a person is exposed to a particular drug ingredient. NA No Yes CONCEPT CONCEPT_ID Drug Ingredient NA
309 drug_era drug_era_start_date Yes date NA The Drug Era Start Date is the start date of the first Drug Exposure for a given ingredient, with at least 31 days since the previous exposure. No No NA NA NA NA NA