Fixed .Rmd parameterization

DDLGeneratr/R/writePDF.R

@@ -1,36 +0,0 @@
-# Copyright 2017 Observational Health Data Sciences and Informatics
-#
-# This file is part of DDLGeneratr
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-
-#' Write PDF of CDM documentation
-#'
-#' @param mdFilesLocation  The dialect of the target database. Choices are "oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server"
-#'
-#' @param cdmVersion The version of the OMOP Common Data Model for which the pdf document is being written. It should be written without a decimal so v5.3 becomes v5_3
-#'
-#' @export
-writePDF <- function(mdFilesLocation, cdmVersion) {
-
-sql <- SqlRender::loadRenderTranslateSql(sqlFilename = "OMOP_CDM_PDF.sql",
-                                         packageName = "DDLGeneratr",
-                                         dbms = "sql server",
-                                         mdFilesLocation = mdFilesLocation)
-
-SqlRender::writeSql(sql = sql,
-                    targetFile = "reports/OMOP_CDM_PDF_rendered.Rmd")
-
-rmarkdown::render(input = "reports/OMOP_CDM_PDF_rendered.Rmd", output_format = "pdf_document", output_file = paste0("OMOP_CDM_",cdmVersion,".pdf"))
-
-}

DDLGeneratr/codeToRun.R

@@ -1,7 +1,13 @@
 #This script is meant to create the OMOP Common Data Model DDLs for each dialect as well as the pdf of the documentation.
 
 
-# Step 1: Update the file inst/sql/sql_server/OMOP CDM ddl.sql with the changes for the new version
+# Step 1: Update the file inst/sql/sql_server/OMOP CDM ddl.sql with the changes for the new version and set the below variables
+
+  # Step 1.1: The version of the CDM you are writing. This will be used for the name of the pdf so, for example, write v5.3 as v5_3
+  cdmVersion <- "v5_3"
+
+  # Step 1.2: The location of the wiki markdown files. The default is "../../Documentation/CommonDataModel_Wiki_Files"
+  mdFilesLocation <- "../../Documentation/CommonDataModel_Wiki_Files"
 
 # Step 2: Run the following code to create the DDLs for each dialect:
 
@@ -30,4 +36,7 @@ writeConstraints("sql server")
 
 # step 5: Run the following code to create the pdf documentation. It will be written to the reports folder.
 
-writePDF(mdFilesLocation = "../../Documentation/CommonDataModel_Wiki_Files", cdmVersion = "v5_3")
+rmarkdown::render("reports/OMOP_CDM_PDF.Rmd",
+                  output_format = "pdf_document",
+                  output_file = paste0("OMOP_CDM_",cdmVersion,".pdf"),
+                  params = list(mdFilesLocation = mdFilesLocation))

DDLGeneratr/reports/OMOP_CDM_PDF.Rmd

@@ -3,7 +3,7 @@ title: "OMOP Common Data Model Specifications"
 author: "Christian Reich, Patrick Ryan, Rimma Belenkaya, Karthik Natarajan and Clair Blacketer"
 date: "`r Sys.Date()`"
 params:
-  mdFilesLocation:"../../Documentation/CommonDataModel_Wiki_Files"
+  mdFilesLocation: "../../Documentation/CommonDataModel_Wiki_Files"
 output:
   pdf_document:
     number_sections: yes
@@ -11,198 +11,202 @@ output:
 linkcolor: blue
 ---
 
+```{r, echo=FALSE}
+mdFilesLocation <- params$mdFilesLocation
+```
+
 # License
-```{r child = paste0(params$mdFilesLocation,'/License.md')}
+```{r child = paste0(mdFilesLocation,'/License.md')}
 ```
 
 # Background
-```{r child = '@mdFilesLocation/Background/Background.md'}
+```{r child = paste0(mdFilesLocation,'/Background/Background.md')}
 ```
 
 ## The Role of the Common Data Model
-```{r child = '@mdFilesLocation/Background/The-Role-of-the-Common-Data-Model.md'}
+```{r child = paste0(mdFilesLocation,'/Background/The-Role-of-the-Common-Data-Model.md')}
 ```
 
 ## Design Principles
-```{r child = '@mdFilesLocation/Background/Design-Principles.md'}
+```{r child = paste0(mdFilesLocation,'/Background/Design-Principles.md')}
 ```
 
 ## Data Model Conventions
-```{r child = '@mdFilesLocation/Background/Data-Model-Conventions.md'}
+```{r child = paste0(mdFilesLocation,'/Background/Data-Model-Conventions.md')}
 ```
 
 # Glossary of Terms
-```{r child = '@mdFilesLocation/Glossary-of-Terms.md'}
+```{r child = paste0(mdFilesLocation,'/Glossary-of-Terms.md')}
 ```
 
 # Standardized Vocabularies
-```{r child = '@mdFilesLocation/StandardizedVocabularies/Standardized-Vocabularies.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedVocabularies/Standardized-Vocabularies.md')}
 ```
 
 ## CONCEPT
-```{r child = '@mdFilesLocation/StandardizedVocabularies/CONCEPT.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedVocabularies/CONCEPT.md')}
 ```
 
 ## VOCABULARY
-```{r child = '@mdFilesLocation/StandardizedVocabularies/VOCABULARY.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedVocabularies/VOCABULARY.md')}
 ```
 
 ## DOMAIN
-```{r child = '@mdFilesLocation/StandardizedVocabularies/DOMAIN.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedVocabularies/DOMAIN.md')}
 ```
 
 ## CONCEPT_CLASS
-```{r child = '@mdFilesLocation/StandardizedVocabularies/CONCEPT_CLASS.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedVocabularies/CONCEPT_CLASS.md')}
 ```
 
 ## CONCEPT_RELATIONSHIP
-```{r child = '@mdFilesLocation/StandardizedVocabularies/CONCEPT_RELATIONSHIP.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedVocabularies/CONCEPT_RELATIONSHIP.md')}
 ```
 
 ## RELATIONSHIP
-```{r child = '@mdFilesLocation/StandardizedVocabularies/RELATIONSHIP.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedVocabularies/RELATIONSHIP.md')}
 ```
 
 ## CONCEPT_SYNONYM
-```{r child = '@mdFilesLocation/StandardizedVocabularies/CONCEPT_SYNONYM.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedVocabularies/CONCEPT_SYNONYM.md')}
 ```
 
 ## CONCEPT_ANCESTOR
-```{r child = '@mdFilesLocation/StandardizedVocabularies/CONCEPT_ANCESTOR.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedVocabularies/CONCEPT_ANCESTOR.md')}
 ```
 
 ## SOURCE_TO_CONCEPT_MAP
-```{r child = '@mdFilesLocation/StandardizedVocabularies/SOURCE_TO_CONCEPT_MAP.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedVocabularies/SOURCE_TO_CONCEPT_MAP.md')}
 ```
 
 ## DRUG_STRENGTH
-```{r child = '@mdFilesLocation/StandardizedVocabularies/DRUG_STRENGTH.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedVocabularies/DRUG_STRENGTH.md')}
 ```
 
 ## COHORT_DEFINITION
-```{r child = '@mdFilesLocation/StandardizedVocabularies/COHORT_DEFINITION.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedVocabularies/COHORT_DEFINITION.md')}
 ```
 
 ## ATTRIBUTE_DEFINITION
-```{r child = '@mdFilesLocation/StandardizedVocabularies/ATTRIBUTE_DEFINITION.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedVocabularies/ATTRIBUTE_DEFINITION.md')}
 ```
 
 # Standardized Metadata
-```{r child = '@mdFilesLocation/StandardizedMetadata/Standardized-Metadata.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedMetadata/Standardized-Metadata.md')}
 ```
 
 ## CDM_SOURCE
-```{r child = '@mdFilesLocation/StandardizedMetadata/CDM_SOURCE.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedMetadata/CDM_SOURCE.md')}
 ```
 
 # Standardized Clinical Data Tables
-```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/Standardized-clinical-Data-Tables.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedclinicalDataTables/Standardized-clinical-Data-Tables.md')}
 ```
 
 ## PERSON
-```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/PERSON.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedclinicalDataTables/PERSON.md')}
 ```
 
 ## OBSERVATION_PERIOD
-```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/OBSERVATION_PERIOD.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedclinicalDataTables/OBSERVATION_PERIOD.md')}
 ```
 
 ## SPECIMEN
-```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/SPECIMEN.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedclinicalDataTables/SPECIMEN.md')}
 ```
 
 ## DEATH
-```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/DEATH.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedclinicalDataTables/DEATH.md')}
 ```
 
 ## VISIT_OCCURRENCE
-```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/VISIT_OCCURRENCE.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedclinicalDataTables/VISIT_OCCURRENCE.md')}
 ```
 
 ## PROCEDURE_OCCURRENCE
-```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/PROCEDURE_OCCURRENCE.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedclinicalDataTables/PROCEDURE_OCCURRENCE.md')}
 ```
 
 ## DRUG_EXPOSURE
-```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/DRUG_EXPOSURE.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedclinicalDataTables/DRUG_EXPOSURE.md')}
 ```
 
 ## DEVICE_EXPOSURE
-```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/DEVICE_EXPOSURE.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedclinicalDataTables/DEVICE_EXPOSURE.md')}
 ```
 
 ## CONDITION_OCCURRENCE
-```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/CONDITION_OCCURRENCE.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedclinicalDataTables/CONDITION_OCCURRENCE.md')}
 ```
 
 ## MEASUREMENT
-```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/MEASUREMENT.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedclinicalDataTables/MEASUREMENT.md')}
 ```
 
 ## NOTE
-```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/NOTE.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedclinicalDataTables/NOTE.md')}
 ```
 
 ## NOTE_NLP
-```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/NOTE_NLP.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedclinicalDataTables/NOTE_NLP.md')}
 ```
 
 ## OBSERVATION
-```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/OBSERVATION.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedclinicalDataTables/OBSERVATION.md')}
 ```
 
 ## FACT_RELATIONSHIP
-```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/FACT_RELATIONSHIP.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedclinicalDataTables/FACT_RELATIONSHIP.md')}
 ```
 
 # Standardized Health System Data Tables
-```{r child = '@mdFilesLocation/StandardizedHealthSystemDataTables/Standardized-Health-System-Data-Tables.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedHealthSystemDataTables/Standardized-Health-System-Data-Tables.md')}
 ```
 
 ## LOCATION
-```{r child = '@mdFilesLocation/StandardizedHealthSystemDataTables/LOCATION.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedHealthSystemDataTables/LOCATION.md')}
 ```
 
 ## CARE_SITE
-```{r child = '@mdFilesLocation/StandardizedHealthSystemDataTables/CARE_SITE.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedHealthSystemDataTables/CARE_SITE.md')}
 ```
 
 ## PROVIDER
-```{r child = '@mdFilesLocation/StandardizedHealthSystemDataTables/PROVIDER.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedHealthSystemDataTables/PROVIDER.md')}
 ```
 
 # Standardized Health Economics Data Tables
-```{r child = '@mdFilesLocation/StandardizedHealthEconomicsDataTables/Standardized-Health-Economics-Data-Tables.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedHealthEconomicsDataTables/Standardized-Health-Economics-Data-Tables.md')}
 ```
 
 ## PAYER_PLAN_PERIOD
-```{r child = '@mdFilesLocation/StandardizedHealthEconomicsDataTables/PAYER_PLAN_PERIOD.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedHealthEconomicsDataTables/PAYER_PLAN_PERIOD.md')}
 ```
 
 ## COST
-```{r child = '@mdFilesLocation/StandardizedHealthEconomicsDataTables/COST.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedHealthEconomicsDataTables/COST.md')}
 ```
 
 # Standardized Derived Elements
-```{r child = '@mdFilesLocation/StandardizedDerivedElements/Standardized-Derived-Elements.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedDerivedElements/Standardized-Derived-Elements.md')}
 ```
 
 ## COHORT
-```{r child = '@mdFilesLocation/StandardizedDerivedElements/COHORT.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedDerivedElements/COHORT.md')}
 ```
 
 ## COHORT_ATTRIBUTE
-```{r child = '@mdFilesLocation/StandardizedDerivedElements/COHORT_ATTRIBUTE.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedDerivedElements/COHORT_ATTRIBUTE.md')}
 ```
 
 ## DRUG_ERA
-```{r child = '@mdFilesLocation/StandardizedDerivedElements/DRUG_ERA.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedDerivedElements/DRUG_ERA.md')}
 ```
 
 ## DOSE_ERA
-```{r child = '@mdFilesLocation/StandardizedDerivedElements/DOSE_ERA.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedDerivedElements/DOSE_ERA.md')}
 ```
 
 ## CONDITION_ERA
-```{r child = '@mdFilesLocation/StandardizedDerivedElements/CONDITION_ERA.md'}
+```{r child = paste0(mdFilesLocation,'/StandardizedDerivedElements/CONDITION_ERA.md')}
 ```

DDLGeneratr/reports/OMOP_CDM_PDF_rendered.Rmd

@@ -1,207 +0,0 @@
----
-title: "OMOP Common Data Model Specifications"
-author: "Christian Reich, Patrick Ryan, Rimma Belenkaya, Karthik Natarajan and Clair Blacketer"
-date: "`r Sys.Date()`"
-output:
-  pdf_document:
-    number_sections: yes
-    toc: yes
-linkcolor: blue
----
-
-# License
-
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/License.md'}
-```
-
-# Background
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/Background/Background.md'}
-```
-
-## The Role of the Common Data Model
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/Background/The-Role-of-the-Common-Data-Model.md'}
-```
-
-## Design Principles
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/Background/Design-Principles.md'}
-```
-
-## Data Model Conventions
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/Background/Data-Model-Conventions.md'}
-```
-
-# Glossary of Terms
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/Glossary-of-Terms.md'}
-```
-
-# Standardized Vocabularies
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/Standardized-Vocabularies.md'}
-```
-
-## CONCEPT
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/CONCEPT.md'}
-```
-
-## VOCABULARY
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/VOCABULARY.md'}
-```
-
-## DOMAIN
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/DOMAIN.md'}
-```
-
-## CONCEPT_CLASS
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/CONCEPT_CLASS.md'}
-```
-
-## CONCEPT_RELATIONSHIP
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/CONCEPT_RELATIONSHIP.md'}
-```
-
-## RELATIONSHIP
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/RELATIONSHIP.md'}
-```
-
-## CONCEPT_SYNONYM
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/CONCEPT_SYNONYM.md'}
-```
-
-## CONCEPT_ANCESTOR
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/CONCEPT_ANCESTOR.md'}
-```
-
-## SOURCE_TO_CONCEPT_MAP
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/SOURCE_TO_CONCEPT_MAP.md'}
-```
-
-## DRUG_STRENGTH
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/DRUG_STRENGTH.md'}
-```
-
-## COHORT_DEFINITION
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/COHORT_DEFINITION.md'}
-```
-
-## ATTRIBUTE_DEFINITION
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/ATTRIBUTE_DEFINITION.md'}
-```
-
-# Standardized Metadata
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedMetadata/Standardized-Metadata.md'}
-```
-
-## CDM_SOURCE
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedMetadata/CDM_SOURCE.md'}
-```
-
-# Standardized Clinical Data Tables
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/Standardized-clinical-Data-Tables.md'}
-```
-
-## PERSON
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/PERSON.md'}
-```
-
-## OBSERVATION_PERIOD
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/OBSERVATION_PERIOD.md'}
-```
-
-## SPECIMEN
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/SPECIMEN.md'}
-```
-
-## DEATH
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/DEATH.md'}
-```
-
-## VISIT_OCCURRENCE
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/VISIT_OCCURRENCE.md'}
-```
-
-## PROCEDURE_OCCURRENCE
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/PROCEDURE_OCCURRENCE.md'}
-```
-
-## DRUG_EXPOSURE
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/DRUG_EXPOSURE.md'}
-```
-
-## DEVICE_EXPOSURE
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/DEVICE_EXPOSURE.md'}
-```
-
-## CONDITION_OCCURRENCE
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/CONDITION_OCCURRENCE.md'}
-```
-
-## MEASUREMENT
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/MEASUREMENT.md'}
-```
-
-## NOTE
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/NOTE.md'}
-```
-
-## NOTE_NLP
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/NOTE_NLP.md'}
-```
-
-## OBSERVATION
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/OBSERVATION.md'}
-```
-
-## FACT_RELATIONSHIP
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/FACT_RELATIONSHIP.md'}
-```
-
-# Standardized Health System Data Tables
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedHealthSystemDataTables/Standardized-Health-System-Data-Tables.md'}
-```
-
-## LOCATION
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedHealthSystemDataTables/LOCATION.md'}
-```
-
-## CARE_SITE
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedHealthSystemDataTables/CARE_SITE.md'}
-```
-
-## PROVIDER
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedHealthSystemDataTables/PROVIDER.md'}
-```
-
-# Standardized Health Economics Data Tables
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedHealthEconomicsDataTables/Standardized-Health-Economics-Data-Tables.md'}
-```
-
-## PAYER_PLAN_PERIOD
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedHealthEconomicsDataTables/PAYER_PLAN_PERIOD.md'}
-```
-
-## COST
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedHealthEconomicsDataTables/COST.md'}
-```
-
-# Standardized Derived Elements
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedDerivedElements/Standardized-Derived-Elements.md'}
-```
-
-## COHORT
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedDerivedElements/COHORT.md'}
-```
-
-## COHORT_ATTRIBUTE
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedDerivedElements/COHORT_ATTRIBUTE.md'}
-```
-
-## DRUG_ERA
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedDerivedElements/DRUG_ERA.md'}
-```
-
-## DOSE_ERA
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedDerivedElements/DOSE_ERA.md'}
-```
-
-## CONDITION_ERA
-```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedDerivedElements/CONDITION_ERA.md'}
-```

DDLGeneratr/reports/OMOP_CDM_v5_3.pdf

@@ -304,12 +304,11 @@ endobj
 >>
 stream
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-6dÅ„™œ0†ÈÔÒ‘Y¬ÑÔ5år<C3A5>RĦ¦K<CŠE
+6dÅ„™œ0†ÈÔÒ1*Öhjˆ„r¹F©aBSÓ‰%ž!Å"Š<04>U"9:•YD–&à$â’èÚ°‘%E]
NÒI2[&kjbL›X4äÌÖïêåíµþ°ìï žt×—‹ù<0F>ƒz·Âƒø½ÙꔚÉ<>šºxÄÓFc]%YB@0ŸægÌ/ä•Uy«r3q³p3q5w3+w³µÙ}ÕMÆ€ÑÑ„O:PÛ~Îã/w¨-q
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