diff --git a/docs/cdm54.html b/docs/cdm54.html index dabc50d..7d1b8a4 100644 --- a/docs/cdm54.html +++ b/docs/cdm54.html @@ -485,7 +485,7 @@ div.tocify {

This is the specification document for the OMOP Common Data Model, v5.4. This is the latest version of the OMOP CDM. Each table is represented with a high-level description and ETL conventions that should be followed. This is continued with a discussion of each field in each table, any conventions related to the field, and constraints that should be followed (like primary key, foreign key, etc). Should you have questions please feel free to visit the forums or the github issue page.

Current Support for CDM v5.4

-

The table below details which OHDSI tools support CDM v5.4. There are two levels of support: legacy support means that the tool supports all tables and fields that were present in CDM v5.3 and feature support indicates that the tool supports any new tables and fields in CDM v5.4 that were not present in CDM v5.3. A green heart 💚 indicates that the support level for the listed tool is in place, has been tested, and released. A yellow heart 💛 indicates that the support level for the listed tool has been initiated but has not yet been tested and released.

+

The table below details which OHDSI tools support CDM v5.4. There are two levels of support: legacy support means that the tool supports all tables and fields that were present in CDM v5.3 and feature support indicates that the tool supports any new tables and fields in CDM v5.4 that were not present in CDM v5.3. A green check ✅ indicates that the support level for the listed tool is in place, has been tested, and released. A warning sign ⚠️ indicates that the support level for the listed tool has been initiated but has not yet been tested and released.

@@ -505,50 +505,50 @@ div.tocify { - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + +
CDM R package This package can be downloaded from https://github.com/OHDSI/CommonDataModel/. It functions to dynamically create the OMOP CDM documentation and DDL scripts to instantiate the CDM tables.💚💚✅✅
Data Quality Dashboard This package can be downloaded from https://github.com/OHDSI/DataQualityDashboard. It runs a set of > 3500 data quality checks against an OMOP CDM instance and is required to be run on all databases prior to participating in an OHDSI network research study.💚💛✅⚠️
Achilles This package can be downloaded from https://github.com/OHDSI/Achilles, performing a set of broad database characterizations agains an OMOP CDM instance.💚💛✅⚠️
ARES This package can be downloaded from https://github.com/OHDSI/Ares and is designed to display the results from both the ACHILLES and DataQualityDashboard packages to support data quality and characterization research.💚💛✅⚠️
ATLAS ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data. Demo💚💛✅⚠️
Rabbit-In-A-Hat This package can be downloaded from https://github.com/OHDSI/WhiteRabbit and is an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.💚💚✅✅
Feature Extraction This package can be downloaded from https://github.com/OHDSI/FeatureExtraction. It is designed to generate features (covariates) for a cohort generated using the OMOP CDM.💚💚*✅✅*
Cohort Diagnostics This package can be downloaded from https://github.com/OHDSI/CohortDiagnostics and is used to critically evaluate cohort phenotypes.💚💛✅⚠️
diff --git a/docs/index.html b/docs/index.html index ea252e2..09ea47e 100644 --- a/docs/index.html +++ b/docs/index.html @@ -420,7 +420,7 @@ $(document).ready(function () {


Current Support for CDM v5.4

-

The table below details which OHDSI tools support CDM v5.4. There are two levels of support: legacy support means that the tool supports all tables and fields that were present in CDM v5.3 and feature support indicates that the tool supports any new tables and fields in CDM v5.4 that were not present in CDM v5.3. A green heart 💚 indicates that the support level for the listed tool is in place, has been tested, and released. A yellow heart 💛 indicates that the support level for the listed tool has been initiated but has not yet been tested and released.

+

The table below details which OHDSI tools support CDM v5.4. There are two levels of support: legacy support means that the tool supports all tables and fields that were present in CDM v5.3 and feature support indicates that the tool supports any new tables and fields in CDM v5.4 that were not present in CDM v5.3. A green check ✅ indicates that the support level for the listed tool is in place, has been tested, and released. A warning sign ⚠️ indicates that the support level for the listed tool has been initiated but has not yet been tested and released.

@@ -440,50 +440,50 @@ $(document).ready(function () { - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + +
CDM R package This package can be downloaded from https://github.com/OHDSI/CommonDataModel/. It functions to dynamically create the OMOP CDM documentation and DDL scripts to instantiate the CDM tables.💚💚✅✅
Data Quality Dashboard This package can be downloaded from https://github.com/OHDSI/DataQualityDashboard. It runs a set of > 3500 data quality checks against an OMOP CDM instance and is required to be run on all databases prior to participating in an OHDSI network research study.💚💛✅⚠️
Achilles This package can be downloaded from https://github.com/OHDSI/Achilles, performing a set of broad database characterizations agains an OMOP CDM instance.💚💛✅⚠️
ARES This package can be downloaded from https://github.com/OHDSI/Ares and is designed to display the results from both the ACHILLES and DataQualityDashboard packages to support data quality and characterization research.💚💛✅⚠️
ATLAS ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data. Demo💚💛✅⚠️
Rabbit-In-A-Hat This package can be downloaded from https://github.com/OHDSI/WhiteRabbit and is an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.💚💚✅✅
Feature Extraction This package can be downloaded from https://github.com/OHDSI/FeatureExtraction. It is designed to generate features (covariates) for a cohort generated using the OMOP CDM.💚💚*✅✅*
Cohort Diagnostics This package can be downloaded from https://github.com/OHDSI/CohortDiagnostics and is used to critically evaluate cohort phenotypes.💚💛✅⚠️
diff --git a/rmd/cdm54.Rmd b/rmd/cdm54.Rmd index d112ac0..5b9cc0f 100644 --- a/rmd/cdm54.Rmd +++ b/rmd/cdm54.Rmd @@ -23,20 +23,20 @@ This is the specification document for the OMOP Common Data Model, v5.4. **This ### Current Support for CDM v5.4 -The table below details which OHDSI tools support CDM v5.4. There are two levels of support: legacy support means that the tool supports all tables and fields that were present in CDM v5.3 and feature support indicates that the tool supports any new tables and fields in CDM v5.4 that were not present in CDM v5.3. A green heart `r emo::ji("green heart")` indicates that the support level for the listed tool is in place, has been tested, and released. A yellow heart `r emo::ji("yellow heart")` indicates that the support level for the listed tool has been initiated but has not yet been tested and released. +The table below details which OHDSI tools support CDM v5.4. There are two levels of support: legacy support means that the tool supports all tables and fields that were present in CDM v5.3 and feature support indicates that the tool supports any new tables and fields in CDM v5.4 that were not present in CDM v5.3. A green check `r emo::ji("white heavy check mark")` indicates that the support level for the listed tool is in place, has been tested, and released. A warning sign `r emo::ji("warning")` indicates that the support level for the listed tool has been initiated but has not yet been tested and released.
|**Tool**|**Description**|**Legacy Support**|**Feature Support**| |--|--|--|--| -|**CDM R package**|This package can be downloaded from [https://github.com/OHDSI/CommonDataModel/](https://github.com/OHDSI/CommonDataModel/). It functions to dynamically create the OMOP CDM documentation and DDL scripts to instantiate the CDM tables. |`r emo::ji("green heart")`|`r emo::ji("green heart")` -|**Data Quality Dashboard**|This package can be downloaded from [https://github.com/OHDSI/DataQualityDashboard](https://github.com/OHDSI/DataQualityDashboard). It runs a set of > 3500 data quality checks against an OMOP CDM instance and is required to be run on all databases prior to participating in an OHDSI network research study.|`r emo::ji("green heart")`| `r emo::ji("yellow heart")` -|**Achilles**|This package can be downloaded from [https://github.com/OHDSI/Achilles](https://github.com/OHDSI/Achilles), performing a set of broad database characterizations agains an OMOP CDM instance. |`r emo::ji("green heart")`|`r emo::ji("yellow heart")` -|**ARES**|This package can be downloaded from [https://github.com/OHDSI/Ares](https://github.com/OHDSI/Ares) and is designed to display the results from both the ACHILLES and DataQualityDashboard packages to support data quality and characterization research.|`r emo::ji("green heart")`|`r emo::ji("yellow heart")` -|**ATLAS**|ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data. [Demo](http://atlas-demo.ohdsi.org/) |`r emo::ji("green heart")`|`r emo::ji("yellow heart")` -|**Rabbit-In-A-Hat**|This package can be downloaded from [https://github.com/OHDSI/WhiteRabbit](https://github.com/OHDSI/WhiteRabbit) and is an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.|`r emo::ji("green heart")`|`r emo::ji("green heart")` -|**Feature Extraction**|This package can be downloaded from [https://github.com/OHDSI/FeatureExtraction](https://github.com/OHDSI/FeatureExtraction). It is designed to generate features (covariates) for a cohort generated using the OMOP CDM. |`r emo::ji("green heart")`|`r emo::ji("green heart")`* -|**Cohort Diagnostics**|This package can be downloaded from [https://github.com/OHDSI/CohortDiagnostics](https://github.com/OHDSI/CohortDiagnostics) and is used to critically evaluate cohort phenotypes. |`r emo::ji("green heart")`|`r emo::ji("yellow heart")` +|**CDM R package**|This package can be downloaded from [https://github.com/OHDSI/CommonDataModel/](https://github.com/OHDSI/CommonDataModel/). It functions to dynamically create the OMOP CDM documentation and DDL scripts to instantiate the CDM tables. |`r emo::ji("white heavy check mark")`|`r emo::ji("white heavy check mark")` +|**Data Quality Dashboard**|This package can be downloaded from [https://github.com/OHDSI/DataQualityDashboard](https://github.com/OHDSI/DataQualityDashboard). It runs a set of > 3500 data quality checks against an OMOP CDM instance and is required to be run on all databases prior to participating in an OHDSI network research study.|`r emo::ji("white heavy check mark")`| `r emo::ji("warning")` +|**Achilles**|This package can be downloaded from [https://github.com/OHDSI/Achilles](https://github.com/OHDSI/Achilles), performing a set of broad database characterizations agains an OMOP CDM instance. |`r emo::ji("white heavy check mark")`|`r emo::ji("warning")` +|**ARES**|This package can be downloaded from [https://github.com/OHDSI/Ares](https://github.com/OHDSI/Ares) and is designed to display the results from both the ACHILLES and DataQualityDashboard packages to support data quality and characterization research.|`r emo::ji("white heavy check mark")`|`r emo::ji("warning")` +|**ATLAS**|ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data. [Demo](http://atlas-demo.ohdsi.org/) |`r emo::ji("white heavy check mark")`|`r emo::ji("warning")` +|**Rabbit-In-A-Hat**|This package can be downloaded from [https://github.com/OHDSI/WhiteRabbit](https://github.com/OHDSI/WhiteRabbit) and is an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.|`r emo::ji("white heavy check mark")`|`r emo::ji("white heavy check mark")` +|**Feature Extraction**|This package can be downloaded from [https://github.com/OHDSI/FeatureExtraction](https://github.com/OHDSI/FeatureExtraction). It is designed to generate features (covariates) for a cohort generated using the OMOP CDM. |`r emo::ji("white heavy check mark")`|`r emo::ji("white heavy check mark")`* +|**Cohort Diagnostics**|This package can be downloaded from [https://github.com/OHDSI/CohortDiagnostics](https://github.com/OHDSI/CohortDiagnostics) and is used to critically evaluate cohort phenotypes. |`r emo::ji("white heavy check mark")`|`r emo::ji("warning")`
\* The **Feature Extraction** package supports all relevant new features in CDM v5.4. For example, it was decided that, from a methodological perspective, the EPISODE and EPISODE_EVENT tables should not be included to define cohort covariates because the events that make up episodes are already pulled in as potential covariates. diff --git a/rmd/index.Rmd b/rmd/index.Rmd index 030be16..c2d1059 100644 --- a/rmd/index.Rmd +++ b/rmd/index.Rmd @@ -19,20 +19,20 @@ The current CDM version is [CDM v5.4](http://ohdsi.github.io/CommonDataModel/cdm ### Current Support for CDM v5.4 -The table below details which OHDSI tools support CDM v5.4. There are two levels of support: legacy support means that the tool supports all tables and fields that were present in CDM v5.3 and feature support indicates that the tool supports any new tables and fields in CDM v5.4 that were not present in CDM v5.3. A green heart `r emo::ji("green heart")` indicates that the support level for the listed tool is in place, has been tested, and released. A yellow heart `r emo::ji("yellow heart")` indicates that the support level for the listed tool has been initiated but has not yet been tested and released. +The table below details which OHDSI tools support CDM v5.4. There are two levels of support: legacy support means that the tool supports all tables and fields that were present in CDM v5.3 and feature support indicates that the tool supports any new tables and fields in CDM v5.4 that were not present in CDM v5.3. A green check `r emo::ji("white heavy check mark")` indicates that the support level for the listed tool is in place, has been tested, and released. A warning sign `r emo::ji("warning")` indicates that the support level for the listed tool has been initiated but has not yet been tested and released.
|**Tool**|**Description**|**Legacy Support**|**Feature Support**| |--|--|--|--| -|**CDM R package**|This package can be downloaded from [https://github.com/OHDSI/CommonDataModel/](https://github.com/OHDSI/CommonDataModel/). It functions to dynamically create the OMOP CDM documentation and DDL scripts to instantiate the CDM tables. |`r emo::ji("green heart")`|`r emo::ji("green heart")` -|**Data Quality Dashboard**|This package can be downloaded from [https://github.com/OHDSI/DataQualityDashboard](https://github.com/OHDSI/DataQualityDashboard). It runs a set of > 3500 data quality checks against an OMOP CDM instance and is required to be run on all databases prior to participating in an OHDSI network research study.|`r emo::ji("green heart")`| `r emo::ji("yellow heart")` -|**Achilles**|This package can be downloaded from [https://github.com/OHDSI/Achilles](https://github.com/OHDSI/Achilles), performing a set of broad database characterizations agains an OMOP CDM instance. |`r emo::ji("green heart")`|`r emo::ji("yellow heart")` -|**ARES**|This package can be downloaded from [https://github.com/OHDSI/Ares](https://github.com/OHDSI/Ares) and is designed to display the results from both the ACHILLES and DataQualityDashboard packages to support data quality and characterization research.|`r emo::ji("green heart")`|`r emo::ji("yellow heart")` -|**ATLAS**|ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data. [Demo](http://atlas-demo.ohdsi.org/) |`r emo::ji("green heart")`|`r emo::ji("yellow heart")` -|**Rabbit-In-A-Hat**|This package can be downloaded from [https://github.com/OHDSI/WhiteRabbit](https://github.com/OHDSI/WhiteRabbit) and is an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.|`r emo::ji("green heart")`|`r emo::ji("green heart")` -|**Feature Extraction**|This package can be downloaded from [https://github.com/OHDSI/FeatureExtraction](https://github.com/OHDSI/FeatureExtraction). It is designed to generate features (covariates) for a cohort generated using the OMOP CDM. |`r emo::ji("green heart")`|`r emo::ji("green heart")`* -|**Cohort Diagnostics**|This package can be downloaded from [https://github.com/OHDSI/CohortDiagnostics](https://github.com/OHDSI/CohortDiagnostics) and is used to critically evaluate cohort phenotypes. |`r emo::ji("green heart")`|`r emo::ji("yellow heart")` +|**CDM R package**|This package can be downloaded from [https://github.com/OHDSI/CommonDataModel/](https://github.com/OHDSI/CommonDataModel/). It functions to dynamically create the OMOP CDM documentation and DDL scripts to instantiate the CDM tables. |`r emo::ji("white heavy check mark")`|`r emo::ji("white heavy check mark")` +|**Data Quality Dashboard**|This package can be downloaded from [https://github.com/OHDSI/DataQualityDashboard](https://github.com/OHDSI/DataQualityDashboard). It runs a set of > 3500 data quality checks against an OMOP CDM instance and is required to be run on all databases prior to participating in an OHDSI network research study.|`r emo::ji("white heavy check mark")`| `r emo::ji("warning")` +|**Achilles**|This package can be downloaded from [https://github.com/OHDSI/Achilles](https://github.com/OHDSI/Achilles), performing a set of broad database characterizations agains an OMOP CDM instance. |`r emo::ji("white heavy check mark")`|`r emo::ji("warning")` +|**ARES**|This package can be downloaded from [https://github.com/OHDSI/Ares](https://github.com/OHDSI/Ares) and is designed to display the results from both the ACHILLES and DataQualityDashboard packages to support data quality and characterization research.|`r emo::ji("white heavy check mark")`|`r emo::ji("warning")` +|**ATLAS**|ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data. [Demo](http://atlas-demo.ohdsi.org/) |`r emo::ji("white heavy check mark")`|`r emo::ji("warning")` +|**Rabbit-In-A-Hat**|This package can be downloaded from [https://github.com/OHDSI/WhiteRabbit](https://github.com/OHDSI/WhiteRabbit) and is an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.|`r emo::ji("white heavy check mark")`|`r emo::ji("white heavy check mark")` +|**Feature Extraction**|This package can be downloaded from [https://github.com/OHDSI/FeatureExtraction](https://github.com/OHDSI/FeatureExtraction). It is designed to generate features (covariates) for a cohort generated using the OMOP CDM. |`r emo::ji("white heavy check mark")`|`r emo::ji("white heavy check mark")`* +|**Cohort Diagnostics**|This package can be downloaded from [https://github.com/OHDSI/CohortDiagnostics](https://github.com/OHDSI/CohortDiagnostics) and is used to critically evaluate cohort phenotypes. |`r emo::ji("white heavy check mark")`|`r emo::ji("warning")`
\* The **Feature Extraction** package supports all relevant new features in CDM v5.4. For example, it was decided that, from a methodological perspective, the EPISODE and EPISODE_EVENT tables should not be included to define cohort covariates because the events that make up episodes are already pulled in as potential covariates.