mz-health/OMOP
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OMOP
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bigquery concept_ids not null

This commit is contained in:
clairblacketer 2018-10-02 15:42:21 -04:00
parent 0ef09f6db1
commit 7b11ba434c
1 changed files with 50 additions and 50 deletions
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100
BigQuery/OMOP CDM bigquery ddl.txt
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@ -184,11 +184,11 @@ create table person
care_site_id INT64 null,
person_source_value STRING null,
gender_source_value STRING null,
gender_source_concept_id INT64 null,
gender_source_concept_id INT64 not null,
race_source_value STRING null,
race_source_concept_id INT64 null,
race_source_concept_id INT64 not null,
ethnicity_source_value STRING null,
ethnicity_source_concept_id INT64 null
ethnicity_source_concept_id INT64 not null
)
;
@ -216,8 +216,8 @@ create table specimen
specimen_datetime DATETIME not null ,
quantity FLOAT64 null ,
unit_concept_id INT64 null ,
anatomic_site_concept_id INT64 null ,
disease_status_concept_id INT64 null ,
anatomic_site_concept_id INT64 not null ,
disease_status_concept_id INT64 not null ,
specimen_source_id STRING null ,
specimen_source_value STRING null ,
unit_source_value STRING null ,
@ -241,11 +241,11 @@ create table visit_occurrence
provider_id INT64 null,
care_site_id INT64 null,
visit_source_value STRING null,
visit_source_concept_id INT64 null ,
admitted_from_concept_id INT64 NULL , /*Changed from admitting_source_* */
visit_source_concept_id INT64 not null ,
admitted_from_concept_id INT64 not NULL , /*Changed from admitting_source_* */
admitted_from_source_value STRING NULL ,
discharge_to_source_value STRING null ,
discharge_to_concept_id INT64 null ,
discharge_to_concept_id INT64 not null ,
preceding_visit_occurrence_id INT64 null
)
;
@ -264,11 +264,11 @@ create table visit_detail
visit_detail_type_concept_id INT64 not null ,
provider_id INT64 null ,
care_site_id INT64 null ,
discharge_to_concept_id INT64 null ,
admitted_from_concept_id INT64 NULL , /*Changed from admitting_source_* */
discharge_to_concept_id INT64 not null ,
admitted_from_concept_id INT64 not NULL , /*Changed from admitting_source_* */
admitted_from_source_value STRING NULL ,
visit_detail_source_value STRING null ,
visit_detail_source_concept_id INT64 null ,
visit_detail_source_concept_id INT64 not null ,
discharge_to_source_value STRING null ,
preceding_visit_detail_id INT64 null ,
visit_detail_parent_id INT64 null ,
@ -286,13 +286,13 @@ create table procedure_occurrence
procedure_date date null ,
procedure_datetime DATETIME not null ,
procedure_type_concept_id INT64 not null ,
modifier_concept_id INT64 null ,
modifier_concept_id INT64 not null ,
quantity INT64 null ,
provider_id INT64 null ,
visit_occurrence_id INT64 null ,
visit_detail_id INT64 null ,
procedure_source_value STRING null ,
procedure_source_concept_id INT64 null ,
procedure_source_concept_id INT64 not null ,
modifier_source_value STRING null
)
;
@ -315,13 +315,13 @@ create table drug_exposure
quantity FLOAT64 null ,
days_supply INT64 null ,
sig STRING null ,
route_concept_id INT64 null ,
route_concept_id INT64 not null ,
lot_number STRING null ,
provider_id INT64 null ,
visit_occurrence_id INT64 null ,
visit_detail_id INT64 null ,
drug_source_value STRING null ,
drug_source_concept_id INT64 null ,
drug_source_concept_id INT64 not null ,
route_source_value STRING null ,
dose_unit_source_value STRING null
)
@ -345,7 +345,7 @@ create table device_exposure
visit_occurrence_id INT64 null ,
visit_detail_id INT64 null ,
device_source_value STRING null ,
device_source_concept_id INT64 null
device_source_concept_id INT64 not null
)
;
@ -361,13 +361,13 @@ create table condition_occurrence
condition_end_date date null ,
condition_end_datetime DATETIME null ,
condition_type_concept_id INT64 not null ,
condition_status_concept_id INT64 null ,
condition_status_concept_id INT64 not null ,
stop_reason STRING null ,
provider_id INT64 null ,
visit_occurrence_id INT64 null ,
visit_detail_id INT64 null ,
condition_source_value STRING null ,
condition_source_concept_id INT64 null ,
condition_source_concept_id INT64 not null ,
condition_status_source_value STRING null
)
;
@ -393,7 +393,7 @@ create table measurement
visit_occurrence_id INT64 null ,
visit_detail_id INT64 null ,
measurement_source_value STRING null ,
measurement_source_concept_id INT64 null ,
measurement_source_concept_id INT64 not null ,
unit_source_value STRING null ,
value_source_value STRING null
)
@ -406,7 +406,7 @@ create table note
note_id INT64 not null ,
person_id INT64 not null ,
note_event_id INT64 null ,
note_event_field_concept_id INT64 NULL ,
note_event_field_concept_id INT64 not NULL ,
note_date date null ,
note_datetime DATETIME not null ,
note_type_concept_id INT64 not null ,
@ -428,18 +428,18 @@ create table note_nlp
(
note_nlp_id INT64 not null ,
note_id INT64 not null ,
section_concept_id INT64 null ,
section_concept_id INT64 not null ,
snippet STRING null ,
"offset" STRING null ,
lexical_variant STRING not null ,
note_nlp_concept_id INT64 null ,
note_nlp_concept_id INT64 not null ,
nlp_system STRING null ,
nlp_date date not null ,
nlp_datetime DATETIME null ,
term_exists STRING null ,
term_temporal STRING null ,
term_modifiers STRING null ,
note_nlp_source_concept_id INT64 null
note_nlp_source_concept_id INT64 not null
)
;
@ -462,11 +462,11 @@ create table observation
visit_occurrence_id INT64 null ,
visit_detail_id INT64 null ,
observation_source_value STRING null ,
observation_source_concept_id INT64 null ,
observation_source_concept_id INT64 not null ,
unit_source_value STRING null ,
qualifier_source_value STRING null ,
observation_event_id INT64 null ,
obs_event_field_concept_id INT64 NULL ,
obs_event_field_concept_id INT64 not NULL ,
value_as_datetime DATETIME null
)
;
@ -482,18 +482,18 @@ create table survey_conduct
survey_end_date date null ,
survey_end_datetime DATETIME not null ,
provider_id INT64 null ,
assisted_concept_id INT64 null ,
respondent_type_concept_id INT64 null ,
timing_concept_id INT64 null ,
collection_method_concept_id INT64 null ,
assisted_concept_id INT64 not null ,
respondent_type_concept_id INT64 not null ,
timing_concept_id INT64 not null ,
collection_method_concept_id INT64 not null ,
assisted_source_value STRING null ,
respondent_type_source_value STRING null ,
timing_source_value STRING null ,
collection_method_source_value STRING null ,
survey_source_value STRING null ,
survey_source_concept_id INT64 null ,
survey_source_concept_id INT64 not null ,
survey_source_identifier STRING null ,
validated_survey_concept_id INT64 null ,
validated_survey_concept_id INT64 not null ,
validated_survey_source_value STRING null ,
survey_version_number STRING null ,
visit_occurrence_id INT64 null ,
@ -535,7 +535,7 @@ create table location_history
(
location_history_id INT64 not null ,
location_id INT64 not null ,
relationship_type_concept_id INT64 null , --Recent addition based on github discussion
relationship_type_concept_id INT64 not null , --Recent addition based on github discussion
domain_id STRING not null ,
entity_id INT64 not null ,
start_date date not null ,
@ -562,15 +562,15 @@ create table provider
provider_name STRING null ,
npi STRING null ,
dea STRING null ,
specialty_concept_id INT64 null ,
specialty_concept_id INT64 not null ,
care_site_id INT64 null ,
year_of_birth INT64 null ,
gender_concept_id INT64 null ,
gender_concept_id INT64 not null ,
provider_source_value STRING null ,
specialty_source_value STRING null ,
specialty_source_concept_id INT64 null ,
specialty_source_concept_id INT64 not null ,
gender_source_value STRING null ,
gender_source_concept_id INT64 null
gender_source_concept_id INT64 not null
)
;
@ -583,22 +583,22 @@ create table payer_plan_period
contract_person_id INT64 null ,
payer_plan_period_start_date date not null ,
payer_plan_period_end_date date not null ,
payer_concept_id INT64 null ,
plan_concept_id INT64 null ,
contract_concept_id INT64 null ,
sponsor_concept_id INT64 null ,
stop_reason_concept_id INT64 null ,
payer_concept_id INT64 not null ,
plan_concept_id INT64 not null ,
contract_concept_id INT64 not null ,
sponsor_concept_id INT64 not null ,
stop_reason_concept_id INT64 not null ,
payer_source_value STRING null ,
payer_source_concept_id INT64 null ,
payer_source_concept_id INT64 not null ,
plan_source_value STRING null ,
plan_source_concept_id INT64 null ,
plan_source_concept_id INT64 not null ,
contract_source_value STRING null ,
contract_source_concept_id INT64 null ,
contract_source_concept_id INT64 not null ,
sponsor_source_value STRING null ,
sponsor_source_concept_id INT64 null ,
sponsor_source_concept_id INT64 not null ,
family_source_value STRING null ,
stop_reason_source_value STRING null ,
stop_reason_source_concept_id INT64 null
stop_reason_source_concept_id INT64 not null
)
;
@ -611,15 +611,15 @@ create table cost
cost_event_field_concept_id INT64 NOT NULL ,
cost_concept_id INT64 not null ,
cost_type_concept_id INT64 not null ,
currency_concept_id INT64 null ,
currency_concept_id INT64 not null ,
cost FLOAT64 null ,
incurred_date date not null ,
billed_date date null ,
paid_date date null ,
revenue_code_concept_id INT64 null ,
drg_concept_id INT64 null ,
revenue_code_concept_id INT64 not null ,
drg_concept_id INT64 not null ,
cost_source_value STRING null ,
cost_source_concept_id INT64 null ,
cost_source_concept_id INT64 not null ,
revenue_code_source_value STRING null ,
drg_source_value STRING null ,
payer_plan_period_id INT64 null