mz-health/OMOP
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OMOP
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bigquery concept_ids not null

This commit is contained in:
clairblacketer 2018-10-02 15:42:21 -04:00
parent 0ef09f6db1
commit 7b11ba434c
1 changed files with 50 additions and 50 deletions
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100
BigQuery/OMOP CDM bigquery ddl.txt
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@ -184,11 +184,11 @@ create table person
care_site_id INT64 null, care_site_id INT64 null,
person_source_value STRING null, person_source_value STRING null,
gender_source_value STRING null, gender_source_value STRING null,
gender_source_concept_id INT64 null, gender_source_concept_id INT64 not null,
race_source_value STRING null, race_source_value STRING null,
race_source_concept_id INT64 null, race_source_concept_id INT64 not null,
ethnicity_source_value STRING null, ethnicity_source_value STRING null,
ethnicity_source_concept_id INT64 null ethnicity_source_concept_id INT64 not null
) )
; ;
@ -216,8 +216,8 @@ create table specimen
specimen_datetime DATETIME not null , specimen_datetime DATETIME not null ,
quantity FLOAT64 null , quantity FLOAT64 null ,
unit_concept_id INT64 null , unit_concept_id INT64 null ,
anatomic_site_concept_id INT64 null , anatomic_site_concept_id INT64 not null ,
disease_status_concept_id INT64 null , disease_status_concept_id INT64 not null ,
specimen_source_id STRING null , specimen_source_id STRING null ,
specimen_source_value STRING null , specimen_source_value STRING null ,
unit_source_value STRING null , unit_source_value STRING null ,
@ -241,11 +241,11 @@ create table visit_occurrence
provider_id INT64 null, provider_id INT64 null,
care_site_id INT64 null, care_site_id INT64 null,
visit_source_value STRING null, visit_source_value STRING null,
visit_source_concept_id INT64 null , visit_source_concept_id INT64 not null ,
admitted_from_concept_id INT64 NULL , /*Changed from admitting_source_* */ admitted_from_concept_id INT64 not NULL , /*Changed from admitting_source_* */
admitted_from_source_value STRING NULL , admitted_from_source_value STRING NULL ,
discharge_to_source_value STRING null , discharge_to_source_value STRING null ,
discharge_to_concept_id INT64 null , discharge_to_concept_id INT64 not null ,
preceding_visit_occurrence_id INT64 null preceding_visit_occurrence_id INT64 null
) )
; ;
@ -264,11 +264,11 @@ create table visit_detail
visit_detail_type_concept_id INT64 not null , visit_detail_type_concept_id INT64 not null ,
provider_id INT64 null , provider_id INT64 null ,
care_site_id INT64 null , care_site_id INT64 null ,
discharge_to_concept_id INT64 null , discharge_to_concept_id INT64 not null ,
admitted_from_concept_id INT64 NULL , /*Changed from admitting_source_* */ admitted_from_concept_id INT64 not NULL , /*Changed from admitting_source_* */
admitted_from_source_value STRING NULL , admitted_from_source_value STRING NULL ,
visit_detail_source_value STRING null , visit_detail_source_value STRING null ,
visit_detail_source_concept_id INT64 null , visit_detail_source_concept_id INT64 not null ,
discharge_to_source_value STRING null , discharge_to_source_value STRING null ,
preceding_visit_detail_id INT64 null , preceding_visit_detail_id INT64 null ,
visit_detail_parent_id INT64 null , visit_detail_parent_id INT64 null ,
@ -286,13 +286,13 @@ create table procedure_occurrence
procedure_date date null , procedure_date date null ,
procedure_datetime DATETIME not null , procedure_datetime DATETIME not null ,
procedure_type_concept_id INT64 not null , procedure_type_concept_id INT64 not null ,
modifier_concept_id INT64 null , modifier_concept_id INT64 not null ,
quantity INT64 null , quantity INT64 null ,
provider_id INT64 null , provider_id INT64 null ,
visit_occurrence_id INT64 null , visit_occurrence_id INT64 null ,
visit_detail_id INT64 null , visit_detail_id INT64 null ,
procedure_source_value STRING null , procedure_source_value STRING null ,
procedure_source_concept_id INT64 null , procedure_source_concept_id INT64 not null ,
modifier_source_value STRING null modifier_source_value STRING null
) )
; ;
@ -315,13 +315,13 @@ create table drug_exposure
quantity FLOAT64 null , quantity FLOAT64 null ,
days_supply INT64 null , days_supply INT64 null ,
sig STRING null , sig STRING null ,
route_concept_id INT64 null , route_concept_id INT64 not null ,
lot_number STRING null , lot_number STRING null ,
provider_id INT64 null , provider_id INT64 null ,
visit_occurrence_id INT64 null , visit_occurrence_id INT64 null ,
visit_detail_id INT64 null , visit_detail_id INT64 null ,
drug_source_value STRING null , drug_source_value STRING null ,
drug_source_concept_id INT64 null , drug_source_concept_id INT64 not null ,
route_source_value STRING null , route_source_value STRING null ,
dose_unit_source_value STRING null dose_unit_source_value STRING null
) )
@ -345,7 +345,7 @@ create table device_exposure
visit_occurrence_id INT64 null , visit_occurrence_id INT64 null ,
visit_detail_id INT64 null , visit_detail_id INT64 null ,
device_source_value STRING null , device_source_value STRING null ,
device_source_concept_id INT64 null device_source_concept_id INT64 not null
) )
; ;
@ -361,13 +361,13 @@ create table condition_occurrence
condition_end_date date null , condition_end_date date null ,
condition_end_datetime DATETIME null , condition_end_datetime DATETIME null ,
condition_type_concept_id INT64 not null , condition_type_concept_id INT64 not null ,
condition_status_concept_id INT64 null , condition_status_concept_id INT64 not null ,
stop_reason STRING null , stop_reason STRING null ,
provider_id INT64 null , provider_id INT64 null ,
visit_occurrence_id INT64 null , visit_occurrence_id INT64 null ,
visit_detail_id INT64 null , visit_detail_id INT64 null ,
condition_source_value STRING null , condition_source_value STRING null ,
condition_source_concept_id INT64 null , condition_source_concept_id INT64 not null ,
condition_status_source_value STRING null condition_status_source_value STRING null
) )
; ;
@ -393,7 +393,7 @@ create table measurement
visit_occurrence_id INT64 null , visit_occurrence_id INT64 null ,
visit_detail_id INT64 null , visit_detail_id INT64 null ,
measurement_source_value STRING null , measurement_source_value STRING null ,
measurement_source_concept_id INT64 null , measurement_source_concept_id INT64 not null ,
unit_source_value STRING null , unit_source_value STRING null ,
value_source_value STRING null value_source_value STRING null
) )
@ -406,7 +406,7 @@ create table note
note_id INT64 not null , note_id INT64 not null ,
person_id INT64 not null , person_id INT64 not null ,
note_event_id INT64 null , note_event_id INT64 null ,
note_event_field_concept_id INT64 NULL , note_event_field_concept_id INT64 not NULL ,
note_date date null , note_date date null ,
note_datetime DATETIME not null , note_datetime DATETIME not null ,
note_type_concept_id INT64 not null , note_type_concept_id INT64 not null ,
@ -428,18 +428,18 @@ create table note_nlp
( (
note_nlp_id INT64 not null , note_nlp_id INT64 not null ,
note_id INT64 not null , note_id INT64 not null ,
section_concept_id INT64 null , section_concept_id INT64 not null ,
snippet STRING null , snippet STRING null ,
"offset" STRING null , "offset" STRING null ,
lexical_variant STRING not null , lexical_variant STRING not null ,
note_nlp_concept_id INT64 null , note_nlp_concept_id INT64 not null ,
nlp_system STRING null , nlp_system STRING null ,
nlp_date date not null , nlp_date date not null ,
nlp_datetime DATETIME null , nlp_datetime DATETIME null ,
term_exists STRING null , term_exists STRING null ,
term_temporal STRING null , term_temporal STRING null ,
term_modifiers STRING null , term_modifiers STRING null ,
note_nlp_source_concept_id INT64 null note_nlp_source_concept_id INT64 not null
) )
; ;
@ -462,11 +462,11 @@ create table observation
visit_occurrence_id INT64 null , visit_occurrence_id INT64 null ,
visit_detail_id INT64 null , visit_detail_id INT64 null ,
observation_source_value STRING null , observation_source_value STRING null ,
observation_source_concept_id INT64 null , observation_source_concept_id INT64 not null ,
unit_source_value STRING null , unit_source_value STRING null ,
qualifier_source_value STRING null , qualifier_source_value STRING null ,
observation_event_id INT64 null , observation_event_id INT64 null ,
obs_event_field_concept_id INT64 NULL , obs_event_field_concept_id INT64 not NULL ,
value_as_datetime DATETIME null value_as_datetime DATETIME null
) )
; ;
@ -482,18 +482,18 @@ create table survey_conduct
survey_end_date date null , survey_end_date date null ,
survey_end_datetime DATETIME not null , survey_end_datetime DATETIME not null ,
provider_id INT64 null , provider_id INT64 null ,
assisted_concept_id INT64 null , assisted_concept_id INT64 not null ,
respondent_type_concept_id INT64 null , respondent_type_concept_id INT64 not null ,
timing_concept_id INT64 null , timing_concept_id INT64 not null ,
collection_method_concept_id INT64 null , collection_method_concept_id INT64 not null ,
assisted_source_value STRING null , assisted_source_value STRING null ,
respondent_type_source_value STRING null , respondent_type_source_value STRING null ,
timing_source_value STRING null , timing_source_value STRING null ,
collection_method_source_value STRING null , collection_method_source_value STRING null ,
survey_source_value STRING null , survey_source_value STRING null ,
survey_source_concept_id INT64 null , survey_source_concept_id INT64 not null ,
survey_source_identifier STRING null , survey_source_identifier STRING null ,
validated_survey_concept_id INT64 null , validated_survey_concept_id INT64 not null ,
validated_survey_source_value STRING null , validated_survey_source_value STRING null ,
survey_version_number STRING null , survey_version_number STRING null ,
visit_occurrence_id INT64 null , visit_occurrence_id INT64 null ,
@ -535,7 +535,7 @@ create table location_history
( (
location_history_id INT64 not null , location_history_id INT64 not null ,
location_id INT64 not null , location_id INT64 not null ,
relationship_type_concept_id INT64 null , --Recent addition based on github discussion relationship_type_concept_id INT64 not null , --Recent addition based on github discussion
domain_id STRING not null , domain_id STRING not null ,
entity_id INT64 not null , entity_id INT64 not null ,
start_date date not null , start_date date not null ,
@ -562,15 +562,15 @@ create table provider
provider_name STRING null , provider_name STRING null ,
npi STRING null , npi STRING null ,
dea STRING null , dea STRING null ,
specialty_concept_id INT64 null , specialty_concept_id INT64 not null ,
care_site_id INT64 null , care_site_id INT64 null ,
year_of_birth INT64 null , year_of_birth INT64 null ,
gender_concept_id INT64 null , gender_concept_id INT64 not null ,
provider_source_value STRING null , provider_source_value STRING null ,
specialty_source_value STRING null , specialty_source_value STRING null ,
specialty_source_concept_id INT64 null , specialty_source_concept_id INT64 not null ,
gender_source_value STRING null , gender_source_value STRING null ,
gender_source_concept_id INT64 null gender_source_concept_id INT64 not null
) )
; ;
@ -583,22 +583,22 @@ create table payer_plan_period
contract_person_id INT64 null , contract_person_id INT64 null ,
payer_plan_period_start_date date not null , payer_plan_period_start_date date not null ,
payer_plan_period_end_date date not null , payer_plan_period_end_date date not null ,
payer_concept_id INT64 null , payer_concept_id INT64 not null ,
plan_concept_id INT64 null , plan_concept_id INT64 not null ,
contract_concept_id INT64 null , contract_concept_id INT64 not null ,
sponsor_concept_id INT64 null , sponsor_concept_id INT64 not null ,
stop_reason_concept_id INT64 null , stop_reason_concept_id INT64 not null ,
payer_source_value STRING null , payer_source_value STRING null ,
payer_source_concept_id INT64 null , payer_source_concept_id INT64 not null ,
plan_source_value STRING null , plan_source_value STRING null ,
plan_source_concept_id INT64 null , plan_source_concept_id INT64 not null ,
contract_source_value STRING null , contract_source_value STRING null ,
contract_source_concept_id INT64 null , contract_source_concept_id INT64 not null ,
sponsor_source_value STRING null , sponsor_source_value STRING null ,
sponsor_source_concept_id INT64 null , sponsor_source_concept_id INT64 not null ,
family_source_value STRING null , family_source_value STRING null ,
stop_reason_source_value STRING null , stop_reason_source_value STRING null ,
stop_reason_source_concept_id INT64 null stop_reason_source_concept_id INT64 not null
) )
; ;
@ -611,15 +611,15 @@ create table cost
cost_event_field_concept_id INT64 NOT NULL , cost_event_field_concept_id INT64 NOT NULL ,
cost_concept_id INT64 not null , cost_concept_id INT64 not null ,
cost_type_concept_id INT64 not null , cost_type_concept_id INT64 not null ,
currency_concept_id INT64 null , currency_concept_id INT64 not null ,
cost FLOAT64 null , cost FLOAT64 null ,
incurred_date date not null , incurred_date date not null ,
billed_date date null , billed_date date null ,
paid_date date null , paid_date date null ,
revenue_code_concept_id INT64 null , revenue_code_concept_id INT64 not null ,
drg_concept_id INT64 null , drg_concept_id INT64 not null ,
cost_source_value STRING null , cost_source_value STRING null ,
cost_source_concept_id INT64 null , cost_source_concept_id INT64 not null ,
revenue_code_source_value STRING null , revenue_code_source_value STRING null ,
drg_source_value STRING null , drg_source_value STRING null ,
payer_plan_period_id INT64 null payer_plan_period_id INT64 null