mz-health/OMOP
mz-health
/
OMOP
mirror of https://github.com/OHDSI/CommonDataModel.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity

Merge pull request #520 from odysseusinc/synapse_support 

Azure Synapse Analytics Dedicated dialect support
This commit is contained in:
clairblacketer 2022-09-23 11:49:32 -04:00 committed by GitHub
parent e2d337ce79 eab766eab8
commit 7dbdede35a
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
11 changed files with 1360 additions and 6 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
R/listSupportedVersions.R
View File

@ -12,6 +12,6 @@ listSupportedVersions <- function() {
#' @export
listSupportedDialects <- function() {
supportedDialects <- c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark")
supportedDialects <- c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake")
return(supportedDialects)
}

8
R/writeDDL.R
View File

@ -30,7 +30,7 @@
writeDdl <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
# argument checks
stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark"))
stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake"))
stopifnot(cdmVersion %in% listSupportedVersions())
stopifnot(is.character(cdmDatabaseSchema))
@ -54,7 +54,7 @@ writeDdl <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema
writePrimaryKeys <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
# argument checks
stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark"))
stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake"))
stopifnot(cdmVersion %in% listSupportedVersions())
stopifnot(is.character(cdmDatabaseSchema))
@ -78,7 +78,7 @@ writePrimaryKeys <- function(targetDialect, cdmVersion, outputfolder, cdmDatabas
writeForeignKeys <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
# argument checks
stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark"))
stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake"))
stopifnot(cdmVersion %in% listSupportedVersions())
stopifnot(is.character(cdmDatabaseSchema))
@ -102,7 +102,7 @@ writeForeignKeys <- function(targetDialect, cdmVersion, outputfolder, cdmDatabas
writeIndex <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
# argument checks
stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark"))
stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake"))
stopifnot(cdmVersion %in% listSupportedVersions())
stopifnot(is.character(cdmDatabaseSchema))

2
extras/codeToRun.R
View File

@ -7,7 +7,7 @@ cdmVersion <- "5.4"
supportedVersions <- CommonDataModel::listSupportedVersions()
for (cdmVersion in supportedVersions) {
for (targetDialect in c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark")) {
for (targetDialect in c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake")) {
CommonDataModel::writeDdl(targetDialect = targetDialect,
cdmVersion = cdmVersion)

158
inst/ddl/5.4/snowflake/OMOPCDM_snowflake_5.4_constraints.sql Normal file
View File

@ -0,0 +1,158 @@
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_gender_concept_id FOREIGN KEY (gender_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_race_concept_id FOREIGN KEY (race_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_ethnicity_concept_id FOREIGN KEY (ethnicity_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_location_id FOREIGN KEY (location_id) REFERENCES LOCATION (LOCATION_ID);
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_race_source_concept_id FOREIGN KEY (race_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_ethnicity_source_concept_id FOREIGN KEY (ethnicity_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.OBSERVATION_PERIOD ADD CONSTRAINT fpk_OBSERVATION_PERIOD_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.OBSERVATION_PERIOD ADD CONSTRAINT fpk_OBSERVATION_PERIOD_period_type_concept_id FOREIGN KEY (period_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_visit_concept_id FOREIGN KEY (visit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_visit_type_concept_id FOREIGN KEY (visit_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_visit_source_concept_id FOREIGN KEY (visit_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_admitting_source_concept_id FOREIGN KEY (admitting_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_discharge_to_concept_id FOREIGN KEY (discharge_to_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_preceding_visit_occurrence_id FOREIGN KEY (preceding_visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_visit_detail_concept_id FOREIGN KEY (visit_detail_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_visit_detail_type_concept_id FOREIGN KEY (visit_detail_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_visit_detail_source_concept_id FOREIGN KEY (visit_detail_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_admitting_source_concept_id FOREIGN KEY (admitting_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_discharge_to_concept_id FOREIGN KEY (discharge_to_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_preceding_visit_detail_id FOREIGN KEY (preceding_visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_visit_detail_parent_id FOREIGN KEY (visit_detail_parent_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_condition_type_concept_id FOREIGN KEY (condition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_condition_status_concept_id FOREIGN KEY (condition_status_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_condition_source_concept_id FOREIGN KEY (condition_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_drug_type_concept_id FOREIGN KEY (drug_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_route_concept_id FOREIGN KEY (route_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_drug_source_concept_id FOREIGN KEY (drug_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_procedure_concept_id FOREIGN KEY (procedure_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_procedure_type_concept_id FOREIGN KEY (procedure_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_modifier_concept_id FOREIGN KEY (modifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_concept_id FOREIGN KEY (device_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_type_concept_id FOREIGN KEY (device_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_source_concept_id FOREIGN KEY (device_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_concept_id FOREIGN KEY (measurement_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_type_concept_id FOREIGN KEY (measurement_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_operator_concept_id FOREIGN KEY (operator_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_source_concept_id FOREIGN KEY (measurement_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_observation_concept_id FOREIGN KEY (observation_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_observation_type_concept_id FOREIGN KEY (observation_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_qualifier_concept_id FOREIGN KEY (qualifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_observation_source_concept_id FOREIGN KEY (observation_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEATH ADD CONSTRAINT fpk_DEATH_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.DEATH ADD CONSTRAINT fpk_DEATH_death_type_concept_id FOREIGN KEY (death_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEATH ADD CONSTRAINT fpk_DEATH_cause_concept_id FOREIGN KEY (cause_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEATH ADD CONSTRAINT fpk_DEATH_cause_source_concept_id FOREIGN KEY (cause_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_type_concept_id FOREIGN KEY (note_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_class_concept_id FOREIGN KEY (note_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_encoding_concept_id FOREIGN KEY (encoding_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_language_concept_id FOREIGN KEY (language_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_section_concept_id FOREIGN KEY (section_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_note_nlp_concept_id FOREIGN KEY (note_nlp_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_note_nlp_source_concept_id FOREIGN KEY (note_nlp_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_specimen_concept_id FOREIGN KEY (specimen_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_specimen_type_concept_id FOREIGN KEY (specimen_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_anatomic_site_concept_id FOREIGN KEY (anatomic_site_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_disease_status_concept_id FOREIGN KEY (disease_status_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_domain_concept_id_1 FOREIGN KEY (domain_concept_id_1) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_domain_concept_id_2 FOREIGN KEY (domain_concept_id_2) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_place_of_service_concept_id FOREIGN KEY (place_of_service_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_location_id FOREIGN KEY (location_id) REFERENCES LOCATION (LOCATION_ID);
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_specialty_concept_id FOREIGN KEY (specialty_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_gender_concept_id FOREIGN KEY (gender_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_specialty_source_concept_id FOREIGN KEY (specialty_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_plan_period_id FOREIGN KEY (payer_plan_period_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_concept_id FOREIGN KEY (payer_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_source_concept_id FOREIGN KEY (payer_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_plan_concept_id FOREIGN KEY (plan_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_plan_source_concept_id FOREIGN KEY (plan_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_sponsor_concept_id FOREIGN KEY (sponsor_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_sponsor_source_concept_id FOREIGN KEY (sponsor_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_stop_reason_concept_id FOREIGN KEY (stop_reason_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_stop_reason_source_concept_id FOREIGN KEY (stop_reason_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COST ADD CONSTRAINT fpk_COST_cost_domain_id FOREIGN KEY (cost_domain_id) REFERENCES @cdmDatabaseSchema.DOMAIN (DOMAIN_ID);
ALTER TABLE @cdmDatabaseSchema.COST ADD CONSTRAINT fpk_COST_cost_type_concept_id FOREIGN KEY (cost_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COST ADD CONSTRAINT fpk_COST_currency_concept_id FOREIGN KEY (currency_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COST ADD CONSTRAINT fpk_COST_revenue_code_concept_id FOREIGN KEY (revenue_code_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COST ADD CONSTRAINT fpk_COST_drg_concept_id FOREIGN KEY (drg_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DRUG_ERA ADD CONSTRAINT fpk_DRUG_ERA_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.DRUG_ERA ADD CONSTRAINT fpk_DRUG_ERA_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_metadata_concept_id FOREIGN KEY (metadata_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_metadata_type_concept_id FOREIGN KEY (metadata_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_domain_id FOREIGN KEY (domain_id) REFERENCES @cdmDatabaseSchema.DOMAIN (DOMAIN_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_vocabulary_id FOREIGN KEY (vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_concept_class_id FOREIGN KEY (concept_class_id) REFERENCES @cdmDatabaseSchema.CONCEPT_CLASS (CONCEPT_CLASS_ID);
ALTER TABLE @cdmDatabaseSchema.VOCABULARY ADD CONSTRAINT fpk_VOCABULARY_vocabulary_concept_id FOREIGN KEY (vocabulary_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DOMAIN ADD CONSTRAINT fpk_DOMAIN_domain_concept_id FOREIGN KEY (domain_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT_CLASS ADD CONSTRAINT fpk_CONCEPT_CLASS_concept_class_concept_id FOREIGN KEY (concept_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT_RELATIONSHIP ADD CONSTRAINT fpk_CONCEPT_RELATIONSHIP_concept_id_1 FOREIGN KEY (concept_id_1) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT_RELATIONSHIP ADD CONSTRAINT fpk_CONCEPT_RELATIONSHIP_concept_id_2 FOREIGN KEY (concept_id_2) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT_RELATIONSHIP ADD CONSTRAINT fpk_CONCEPT_RELATIONSHIP_relationship_id FOREIGN KEY (relationship_id) REFERENCES @cdmDatabaseSchema.RELATIONSHIP (RELATIONSHIP_ID);
ALTER TABLE @cdmDatabaseSchema.RELATIONSHIP ADD CONSTRAINT fpk_RELATIONSHIP_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT_SYNONYM ADD CONSTRAINT fpk_CONCEPT_SYNONYM_concept_id FOREIGN KEY (concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT_SYNONYM ADD CONSTRAINT fpk_CONCEPT_SYNONYM_language_concept_id FOREIGN KEY (language_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT_ANCESTOR ADD CONSTRAINT fpk_CONCEPT_ANCESTOR_ancestor_concept_id FOREIGN KEY (ancestor_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT_ANCESTOR ADD CONSTRAINT fpk_CONCEPT_ANCESTOR_descendant_concept_id FOREIGN KEY (descendant_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.SOURCE_TO_CONCEPT_MAP ADD CONSTRAINT fpk_SOURCE_TO_CONCEPT_MAP_source_concept_id FOREIGN KEY (source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.SOURCE_TO_CONCEPT_MAP ADD CONSTRAINT fpk_SOURCE_TO_CONCEPT_MAP_target_concept_id FOREIGN KEY (target_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.SOURCE_TO_CONCEPT_MAP ADD CONSTRAINT fpk_SOURCE_TO_CONCEPT_MAP_target_vocabulary_id FOREIGN KEY (target_vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_ingredient_concept_id FOREIGN KEY (ingredient_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_amount_unit_concept_id FOREIGN KEY (amount_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_numerator_unit_concept_id FOREIGN KEY (numerator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_denominator_unit_concept_id FOREIGN KEY (denominator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_definition_type_concept_id FOREIGN KEY (definition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_subject_concept_id FOREIGN KEY (subject_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.ATTRIBUTE_DEFINITION ADD CONSTRAINT fpk_ATTRIBUTE_DEFINITION_attribute_type_concept_id FOREIGN KEY (attribute_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);

481
inst/ddl/5.4/snowflake/OMOPCDM_snowflake_5.4_ddl.sql Normal file
View File

@ -0,0 +1,481 @@
--USE DATABASE snowflake54;
--CREATE OR REPLACE SCHEMA cdm54;
--snowflake CDM DDL Specification for OMOP Common Data Model 5.4
CREATE TABLE @cdmDatabaseSchema.PERSON (
person_id integer NOT NULL,
gender_concept_id integer NOT NULL,
year_of_birth integer NOT NULL,
month_of_birth integer NULL,
day_of_birth integer NULL,
birth_datetime TIMESTAMP NULL,
race_concept_id integer NOT NULL,
ethnicity_concept_id integer NOT NULL,
location_id integer NULL,
provider_id integer NULL,
care_site_id integer NULL,
person_source_value varchar(50) NULL,
gender_source_value varchar(50) NULL,
gender_source_concept_id integer NULL,
race_source_value varchar(50) NULL,
race_source_concept_id integer NULL,
ethnicity_source_value varchar(50) NULL,
ethnicity_source_concept_id integer NULL );
CREATE TABLE @cdmDatabaseSchema.OBSERVATION_PERIOD (
observation_period_id integer NOT NULL,
person_id integer NOT NULL,
observation_period_start_date date NOT NULL,
observation_period_end_date date NOT NULL,
period_type_concept_id integer NOT NULL );
CREATE TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE (
visit_occurrence_id integer NOT NULL,
person_id integer NOT NULL,
visit_concept_id integer NOT NULL,
visit_start_date date NOT NULL,
visit_start_datetime TIMESTAMP NULL,
visit_end_date date NOT NULL,
visit_end_datetime TIMESTAMP NULL,
visit_type_concept_id Integer NOT NULL,
provider_id integer NULL,
care_site_id integer NULL,
visit_source_value varchar(50) NULL,
visit_source_concept_id integer NULL,
admitting_source_concept_id integer NULL,
admitting_source_value varchar(50) NULL,
discharge_to_concept_id integer NULL,
discharge_to_source_value varchar(50) NULL,
preceding_visit_occurrence_id integer NULL );
CREATE TABLE @cdmDatabaseSchema.VISIT_DETAIL (
visit_detail_id integer NOT NULL,
person_id integer NOT NULL,
visit_detail_concept_id integer NOT NULL,
visit_detail_start_date date NOT NULL,
visit_detail_start_datetime TIMESTAMP NULL,
visit_detail_end_date date NOT NULL,
visit_detail_end_datetime TIMESTAMP NULL,
visit_detail_type_concept_id integer NOT NULL,
provider_id integer NULL,
care_site_id integer NULL,
visit_detail_source_value varchar(50) NULL,
visit_detail_source_concept_id Integer NULL,
admitting_source_value Varchar(50) NULL,
admitting_source_concept_id Integer NULL,
discharge_to_source_value Varchar(50) NULL,
discharge_to_concept_id integer NULL,
preceding_visit_detail_id integer NULL,
visit_detail_parent_id integer NULL,
visit_occurrence_id integer NOT NULL );
CREATE TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE (
condition_occurrence_id integer NOT NULL,
person_id integer NOT NULL,
condition_concept_id integer NOT NULL,
condition_start_date date NOT NULL,
condition_start_datetime TIMESTAMP NULL,
condition_end_date date NULL,
condition_end_datetime TIMESTAMP NULL,
condition_type_concept_id integer NOT NULL,
condition_status_concept_id integer NULL,
stop_reason varchar(20) NULL,
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
condition_source_value varchar(50) NULL,
condition_source_concept_id integer NULL,
condition_status_source_value varchar(50) NULL );
CREATE TABLE @cdmDatabaseSchema.DRUG_EXPOSURE (
drug_exposure_id integer NOT NULL,
person_id integer NOT NULL,
drug_concept_id integer NOT NULL,
drug_exposure_start_date date NOT NULL,
drug_exposure_start_datetime TIMESTAMP NULL,
drug_exposure_end_date date NOT NULL,
drug_exposure_end_datetime TIMESTAMP NULL,
verbatim_end_date date NULL,
drug_type_concept_id integer NOT NULL,
stop_reason varchar(20) NULL,
refills integer NULL,
quantity NUMERIC NULL,
days_supply integer NULL,
sig TEXT NULL,
route_concept_id integer NULL,
lot_number varchar(50) NULL,
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
drug_source_value varchar(50) NULL,
drug_source_concept_id integer NULL,
route_source_value varchar(50) NULL,
dose_unit_source_value varchar(50) NULL );
CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE (
procedure_occurrence_id integer NOT NULL,
person_id integer NOT NULL,
procedure_concept_id integer NOT NULL,
procedure_date date NOT NULL,
procedure_datetime TIMESTAMP NULL,
procedure_type_concept_id integer NOT NULL,
modifier_concept_id integer NULL,
quantity integer NULL,
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
procedure_source_value varchar(50) NULL,
procedure_source_concept_id integer NULL,
modifier_source_value varchar(50) NULL );
CREATE TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE (
device_exposure_id integer NOT NULL,
person_id integer NOT NULL,
device_concept_id integer NOT NULL,
device_exposure_start_date date NOT NULL,
device_exposure_start_datetime TIMESTAMP NULL,
device_exposure_end_date date NULL,
device_exposure_end_datetime TIMESTAMP NULL,
device_type_concept_id integer NOT NULL,
unique_device_id varchar(50) NULL,
quantity integer NULL,
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
device_source_value varchar(50) NULL,
device_source_concept_id integer NULL );
CREATE TABLE @cdmDatabaseSchema.MEASUREMENT (
measurement_id integer NOT NULL,
person_id integer NOT NULL,
measurement_concept_id integer NOT NULL,
measurement_date date NOT NULL,
measurement_datetime TIMESTAMP NULL,
measurement_time varchar(10) NULL,
measurement_type_concept_id integer NOT NULL,
operator_concept_id integer NULL,
value_as_number NUMERIC NULL,
value_as_concept_id integer NULL,
unit_concept_id integer NULL,
range_low NUMERIC NULL,
range_high NUMERIC NULL,
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
measurement_source_value varchar(50) NULL,
measurement_source_concept_id integer NULL,
unit_source_value varchar(50) NULL,
value_source_value varchar(50) NULL );
CREATE TABLE @cdmDatabaseSchema.OBSERVATION (
observation_id integer NOT NULL,
person_id integer NOT NULL,
observation_concept_id integer NOT NULL,
observation_date date NOT NULL,
observation_datetime TIMESTAMP NULL,
observation_type_concept_id integer NOT NULL,
value_as_number NUMERIC NULL,
value_as_string varchar(60) NULL,
value_as_concept_id Integer NULL,
qualifier_concept_id integer NULL,
unit_concept_id integer NULL,
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
observation_source_value varchar(50) NULL,
observation_source_concept_id integer NULL,
unit_source_value varchar(50) NULL,
qualifier_source_value varchar(50) NULL );
CREATE TABLE @cdmDatabaseSchema.DEATH (
person_id integer NOT NULL,
death_date date NOT NULL,
death_datetime TIMESTAMP NULL,
death_type_concept_id integer NULL,
cause_concept_id integer NULL,
cause_source_value varchar(50) NULL,
cause_source_concept_id integer NULL );
CREATE TABLE @cdmDatabaseSchema.NOTE (
note_id integer NOT NULL,
person_id integer NOT NULL,
note_date date NOT NULL,
note_datetime TIMESTAMP NULL,
note_type_concept_id integer NOT NULL,
note_class_concept_id integer NOT NULL,
note_title varchar(250) NULL,
note_text TEXT NOT NULL,
encoding_concept_id integer NOT NULL,
language_concept_id integer NOT NULL,
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
note_source_value varchar(50) NULL );
CREATE TABLE @cdmDatabaseSchema.NOTE_NLP (
note_nlp_id integer NOT NULL,
note_id integer NOT NULL,
section_concept_id integer NULL,
snippet varchar(250) NULL,
"offset" varchar(50) NULL,
lexical_variant varchar(250) NOT NULL,
note_nlp_concept_id integer NULL,
note_nlp_source_concept_id integer NULL,
nlp_system varchar(250) NULL,
nlp_date date NOT NULL,
nlp_datetime TIMESTAMP NULL,
term_exists varchar(1) NULL,
term_temporal varchar(50) NULL,
term_modifiers varchar(2000) NULL );
CREATE TABLE @cdmDatabaseSchema.SPECIMEN (
specimen_id integer NOT NULL,
person_id integer NOT NULL,
specimen_concept_id integer NOT NULL,
specimen_type_concept_id integer NOT NULL,
specimen_date date NOT NULL,
specimen_datetime TIMESTAMP NULL,
quantity NUMERIC NULL,
unit_concept_id integer NULL,
anatomic_site_concept_id integer NULL,
disease_status_concept_id integer NULL,
specimen_source_id varchar(50) NULL,
specimen_source_value varchar(50) NULL,
unit_source_value varchar(50) NULL,
anatomic_site_source_value varchar(50) NULL,
disease_status_source_value varchar(50) NULL );
CREATE TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP (
domain_concept_id_1 integer NOT NULL,
fact_id_1 integer NOT NULL,
domain_concept_id_2 integer NOT NULL,
fact_id_2 integer NOT NULL,
relationship_concept_id integer NOT NULL );
CREATE TABLE @cdmDatabaseSchema.LOCATION (
location_id integer NOT NULL,
address_1 varchar(50) NULL,
address_2 varchar(50) NULL,
city varchar(50) NULL,
state varchar(2) NULL,
zip varchar(9) NULL,
county varchar(20) NULL,
location_source_value varchar(50) NULL );
CREATE TABLE @cdmDatabaseSchema.CARE_SITE (
care_site_id integer NOT NULL,
care_site_name varchar(255) NULL,
place_of_service_concept_id integer NULL,
location_id integer NULL,
care_site_source_value varchar(50) NULL,
place_of_service_source_value varchar(50) NULL );
CREATE TABLE @cdmDatabaseSchema.PROVIDER (
provider_id integer NOT NULL,
provider_name varchar(255) NULL,
npi varchar(20) NULL,
dea varchar(20) NULL,
specialty_concept_id integer NULL,
care_site_id integer NULL,
year_of_birth integer NULL,
gender_concept_id integer NULL,
provider_source_value varchar(50) NULL,
specialty_source_value varchar(50) NULL,
specialty_source_concept_id integer NULL,
gender_source_value varchar(50) NULL,
gender_source_concept_id integer NULL );
CREATE TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD (
payer_plan_period_id integer NOT NULL,
person_id integer NOT NULL,
payer_plan_period_start_date date NOT NULL,
payer_plan_period_end_date date NOT NULL,
payer_concept_id integer NULL,
payer_source_value varchar(50) NULL,
payer_source_concept_id integer NULL,
plan_concept_id integer NULL,
plan_source_value varchar(50) NULL,
plan_source_concept_id integer NULL,
sponsor_concept_id integer NULL,
sponsor_source_value varchar(50) NULL,
sponsor_source_concept_id integer NULL,
family_source_value varchar(50) NULL,
stop_reason_concept_id integer NULL,
stop_reason_source_value varchar(50) NULL,
stop_reason_source_concept_id integer NULL );
CREATE TABLE @cdmDatabaseSchema.COST (
cost_id integer NOT NULL,
cost_event_id integer NOT NULL,
cost_domain_id varchar(20) NOT NULL,
cost_type_concept_id integer NOT NULL,
currency_concept_id integer NULL,
total_charge NUMERIC NULL,
total_cost NUMERIC NULL,
total_paid NUMERIC NULL,
paid_by_payer NUMERIC NULL,
paid_by_patient NUMERIC NULL,
paid_patient_copay NUMERIC NULL,
paid_patient_coinsurance NUMERIC NULL,
paid_patient_deductible NUMERIC NULL,
paid_by_primary NUMERIC NULL,
paid_ingredient_cost NUMERIC NULL,
paid_dispensing_fee NUMERIC NULL,
payer_plan_period_id integer NULL,
amount_allowed NUMERIC NULL,
revenue_code_concept_id integer NULL,
revenue_code_source_value varchar(50) NULL,
drg_concept_id integer NULL,
drg_source_value varchar(3) NULL );
CREATE TABLE @cdmDatabaseSchema.DRUG_ERA (
drug_era_id integer NOT NULL,
person_id integer NOT NULL,
drug_concept_id integer NOT NULL,
drug_era_start_date TIMESTAMP NOT NULL,
drug_era_end_date TIMESTAMP NOT NULL,
drug_exposure_count integer NULL,
gap_days integer NULL );
CREATE TABLE @cdmDatabaseSchema.DOSE_ERA (
dose_era_id integer NOT NULL,
person_id integer NOT NULL,
drug_concept_id integer NOT NULL,
unit_concept_id integer NOT NULL,
dose_value NUMERIC NOT NULL,
dose_era_start_date TIMESTAMP NOT NULL,
dose_era_end_date TIMESTAMP NOT NULL );
CREATE TABLE @cdmDatabaseSchema.CONDITION_ERA (
condition_era_id integer NOT NULL,
person_id integer NOT NULL,
condition_concept_id integer NOT NULL,
condition_era_start_date TIMESTAMP NOT NULL,
condition_era_end_date TIMESTAMP NOT NULL,
condition_occurrence_count integer NULL );
CREATE TABLE @cdmDatabaseSchema.METADATA (
metadata_concept_id integer NOT NULL,
metadata_type_concept_id integer NOT NULL,
name varchar(250) NOT NULL,
value_as_string varchar(250) NULL,
value_as_concept_id integer NULL,
metadata_date date NULL,
metadata_datetime TIMESTAMP NULL );
CREATE TABLE @cdmDatabaseSchema.CDM_SOURCE (
cdm_source_name varchar(255) NOT NULL,
cdm_source_abbreviation varchar(25) NULL,
cdm_holder varchar(255) NULL,
source_description TEXT NULL,
source_documentation_reference varchar(255) NULL,
cdm_etl_reference varchar(255) NULL,
source_release_date date NULL,
cdm_release_date date NULL,
cdm_version varchar(10) NULL,
vocabulary_version varchar(20) NULL );
CREATE TABLE @cdmDatabaseSchema.CONCEPT (
concept_id integer NOT NULL,
concept_name varchar(255) NOT NULL,
domain_id varchar(20) NOT NULL,
vocabulary_id varchar(20) NOT NULL,
concept_class_id varchar(20) NOT NULL,
standard_concept varchar(1) NULL,
concept_code varchar(50) NOT NULL,
valid_start_date date NOT NULL,
valid_end_date date NOT NULL,
invalid_reason varchar(1) NULL );
CREATE TABLE @cdmDatabaseSchema.VOCABULARY (
vocabulary_id varchar(20) NOT NULL,
vocabulary_name varchar(255) NOT NULL,
vocabulary_reference varchar(255) NOT NULL,
vocabulary_version varchar(255) NULL,
vocabulary_concept_id integer NOT NULL );
CREATE TABLE @cdmDatabaseSchema.DOMAIN (
domain_id varchar(20) NOT NULL,
domain_name varchar(255) NOT NULL,
domain_concept_id integer NOT NULL );
CREATE TABLE @cdmDatabaseSchema.CONCEPT_CLASS (
concept_class_id varchar(20) NOT NULL,
concept_class_name varchar(255) NOT NULL,
concept_class_concept_id integer NOT NULL );
CREATE TABLE @cdmDatabaseSchema.CONCEPT_RELATIONSHIP (
concept_id_1 integer NOT NULL,
concept_id_2 integer NOT NULL,
relationship_id varchar(20) NOT NULL,
valid_start_date date NOT NULL,
valid_end_date date NOT NULL,
invalid_reason varchar(1) NULL );
CREATE TABLE @cdmDatabaseSchema.RELATIONSHIP (
relationship_id varchar(20) NOT NULL,
relationship_name varchar(255) NOT NULL,
is_hierarchical varchar(1) NOT NULL,
defines_ancestry varchar(1) NOT NULL,
reverse_relationship_id varchar(20) NOT NULL,
relationship_concept_id integer NOT NULL );
CREATE TABLE @cdmDatabaseSchema.CONCEPT_SYNONYM (
concept_id integer NOT NULL,
concept_synonym_name varchar(1000) NOT NULL,
language_concept_id integer NOT NULL );
CREATE TABLE @cdmDatabaseSchema.CONCEPT_ANCESTOR (
ancestor_concept_id integer NOT NULL,
descendant_concept_id integer NOT NULL,
min_levels_of_separation integer NOT NULL,
max_levels_of_separation integer NOT NULL );
CREATE TABLE @cdmDatabaseSchema.SOURCE_TO_CONCEPT_MAP (
source_code varchar(50) NOT NULL,
source_concept_id integer NOT NULL,
source_vocabulary_id varchar(20) NOT NULL,
source_code_description varchar(255) NULL,
target_concept_id integer NOT NULL,
target_vocabulary_id varchar(20) NOT NULL,
valid_start_date date NOT NULL,
valid_end_date date NOT NULL,
invalid_reason varchar(1) NULL );
CREATE TABLE @cdmDatabaseSchema.DRUG_STRENGTH (
drug_concept_id integer NOT NULL,
ingredient_concept_id integer NOT NULL,
amount_value NUMERIC NULL,
amount_unit_concept_id integer NULL,
numerator_value NUMERIC NULL,
numerator_unit_concept_id integer NULL,
denominator_value NUMERIC NULL,
denominator_unit_concept_id integer NULL,
box_size integer NULL,
valid_start_date date NOT NULL,
valid_end_date date NOT NULL,
invalid_reason varchar(1) NULL );
CREATE TABLE @cdmDatabaseSchema.COHORT_DEFINITION (
cohort_definition_id integer NOT NULL,
cohort_definition_name varchar(255) NOT NULL,
cohort_definition_description TEXT NULL,
definition_type_concept_id integer NOT NULL,
cohort_definition_syntax TEXT NULL,
subject_concept_id integer NOT NULL,
cohort_initiation_date date NULL );
CREATE TABLE @cdmDatabaseSchema.ATTRIBUTE_DEFINITION (
attribute_definition_id integer NOT NULL,
attribute_name varchar(255) NOT NULL,
attribute_description TEXT NULL,
attribute_type_concept_id integer NOT NULL,
attribute_syntax TEXT NULL );
CREATE TABLE @cdmDatabaseSchema.COHORT (
cohort_definition_id integer NOT NULL,
subject_id integer NOT NULL,
cohort_start_date date NOT NULL,
cohort_end_date date NOT NULL );

1
inst/ddl/5.4/snowflake/OMOPCDM_snowflake_5.4_indices.sql Normal file
View File

@ -0,0 +1 @@
-- snowflake does not support indexes

26
inst/ddl/5.4/snowflake/OMOPCDM_snowflake_5.4_primary_keys.sql Normal file
View File

@ -0,0 +1,26 @@
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT xpk_PERSON PRIMARY KEY (person_id);
ALTER TABLE @cdmDatabaseSchema.OBSERVATION_PERIOD ADD CONSTRAINT xpk_OBSERVATION_PERIOD PRIMARY KEY (observation_period_id);
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT xpk_VISIT_OCCURRENCE PRIMARY KEY (visit_occurrence_id);
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT xpk_VISIT_DETAIL PRIMARY KEY (visit_detail_id);
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT xpk_CONDITION_OCCURRENCE PRIMARY KEY (condition_occurrence_id);
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT xpk_DRUG_EXPOSURE PRIMARY KEY (drug_exposure_id);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT xpk_PROCEDURE_OCCURRENCE PRIMARY KEY (procedure_occurrence_id);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT xpk_DEVICE_EXPOSURE PRIMARY KEY (device_exposure_id);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT xpk_MEASUREMENT PRIMARY KEY (measurement_id);
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT xpk_OBSERVATION PRIMARY KEY (observation_id);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT xpk_NOTE PRIMARY KEY (note_id);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT xpk_NOTE_NLP PRIMARY KEY (note_nlp_id);
ALTER TABLE @cdmDatabaseSchema.SPECIMEN ADD CONSTRAINT xpk_SPECIMEN PRIMARY KEY (specimen_id);
ALTER TABLE @cdmDatabaseSchema.LOCATION ADD CONSTRAINT xpk_LOCATION PRIMARY KEY (location_id);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT xpk_CARE_SITE PRIMARY KEY (care_site_id);
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT xpk_PROVIDER PRIMARY KEY (provider_id);
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT xpk_PAYER_PLAN_PERIOD PRIMARY KEY (payer_plan_period_id);
ALTER TABLE @cdmDatabaseSchema.COST ADD CONSTRAINT xpk_COST PRIMARY KEY (cost_id);
ALTER TABLE @cdmDatabaseSchema.DRUG_ERA ADD CONSTRAINT xpk_DRUG_ERA PRIMARY KEY (drug_era_id);
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT xpk_DOSE_ERA PRIMARY KEY (dose_era_id);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT xpk_CONDITION_ERA PRIMARY KEY (condition_era_id);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT xpk_CONCEPT PRIMARY KEY (concept_id);
ALTER TABLE @cdmDatabaseSchema.VOCABULARY ADD CONSTRAINT xpk_VOCABULARY PRIMARY KEY (vocabulary_id);
ALTER TABLE @cdmDatabaseSchema.DOMAIN ADD CONSTRAINT xpk_DOMAIN PRIMARY KEY (domain_id);
ALTER TABLE @cdmDatabaseSchema.CONCEPT_CLASS ADD CONSTRAINT xpk_CONCEPT_CLASS PRIMARY KEY (concept_class_id);
ALTER TABLE @cdmDatabaseSchema.RELATIONSHIP ADD CONSTRAINT xpk_RELATIONSHIP PRIMARY KEY (relationship_id);

1
inst/ddl/5.4/synapse/OMOPCDM_synapse_5.4_constraints.sql Normal file
View File

@ -0,0 +1 @@
-- azure synapse does not allow Foreign Key Constraints for OMOP Common Data Model 5.4

546
inst/ddl/5.4/synapse/OMOPCDM_synapse_5.4_ddl.sql Normal file
View File

@ -0,0 +1,546 @@
-- azure synapse CDM DDL Specification for OMOP Common Data Model 5.4
CREATE TABLE @cdmDatabaseSchema.PERSON (
person_id integer NOT NULL,
gender_concept_id integer NOT NULL,
year_of_birth integer NOT NULL,
month_of_birth integer NULL,
day_of_birth integer NULL,
birth_datetime datetime NULL,
race_concept_id integer NOT NULL,
ethnicity_concept_id integer NOT NULL,
location_id integer NULL,
provider_id integer NULL,
care_site_id integer NULL,
person_source_value varchar(50) NULL,
gender_source_value varchar(50) NULL,
gender_source_concept_id integer NULL,
race_source_value varchar(50) NULL,
race_source_concept_id integer NULL,
ethnicity_source_value varchar(50) NULL,
ethnicity_source_concept_id integer NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.OBSERVATION_PERIOD (
observation_period_id integer NOT NULL,
person_id integer NOT NULL,
observation_period_start_date date NOT NULL,
observation_period_end_date date NOT NULL,
period_type_concept_id integer NOT NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE (
visit_occurrence_id integer NOT NULL,
person_id integer NOT NULL,
visit_concept_id integer NOT NULL,
visit_start_date date NOT NULL,
visit_start_datetime datetime NULL,
visit_end_date date NOT NULL,
visit_end_datetime datetime NULL,
visit_type_concept_id Integer NOT NULL,
provider_id integer NULL,
care_site_id integer NULL,
visit_source_value varchar(50) NULL,
visit_source_concept_id integer NULL,
admitted_from_concept_id integer NULL,
admitted_from_source_value varchar(50) NULL,
discharged_to_concept_id integer NULL,
discharged_to_source_value varchar(50) NULL,
preceding_visit_occurrence_id integer NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.VISIT_DETAIL (
visit_detail_id integer NOT NULL,
person_id integer NOT NULL,
visit_detail_concept_id integer NOT NULL,
visit_detail_start_date date NOT NULL,
visit_detail_start_datetime datetime NULL,
visit_detail_end_date date NOT NULL,
visit_detail_end_datetime datetime NULL,
visit_detail_type_concept_id integer NOT NULL,
provider_id integer NULL,
care_site_id integer NULL,
visit_detail_source_value varchar(50) NULL,
visit_detail_source_concept_id Integer NULL,
admitted_from_concept_id Integer NULL,
admitted_from_source_value varchar(50) NULL,
discharged_to_source_value varchar(50) NULL,
discharged_to_concept_id integer NULL,
preceding_visit_detail_id integer NULL,
parent_visit_detail_id integer NULL,
visit_occurrence_id integer NOT NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE (
condition_occurrence_id integer NOT NULL,
person_id integer NOT NULL,
condition_concept_id integer NOT NULL,
condition_start_date date NOT NULL,
condition_start_datetime datetime NULL,
condition_end_date date NULL,
condition_end_datetime datetime NULL,
condition_type_concept_id integer NOT NULL,
condition_status_concept_id integer NULL,
stop_reason varchar(20) NULL,
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
condition_source_value varchar(50) NULL,
condition_source_concept_id integer NULL,
condition_status_source_value varchar(50) NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.DRUG_EXPOSURE (
drug_exposure_id integer NOT NULL,
person_id integer NOT NULL,
drug_concept_id integer NOT NULL,
drug_exposure_start_date date NOT NULL,
drug_exposure_start_datetime datetime NULL,
drug_exposure_end_date date NOT NULL,
drug_exposure_end_datetime datetime NULL,
verbatim_end_date date NULL,
drug_type_concept_id integer NOT NULL,
stop_reason varchar(20) NULL,
refills integer NULL,
quantity float NULL,
days_supply integer NULL,
sig varchar(MAX) NULL,
route_concept_id integer NULL,
lot_number varchar(50) NULL,
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
drug_source_value varchar(50) NULL,
drug_source_concept_id integer NULL,
route_source_value varchar(50) NULL,
dose_unit_source_value varchar(50) NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE (
procedure_occurrence_id integer NOT NULL,
person_id integer NOT NULL,
procedure_concept_id integer NOT NULL,
procedure_date date NOT NULL,
procedure_datetime datetime NULL,
procedure_end_date date NULL,
procedure_end_datetime datetime NULL,
procedure_type_concept_id integer NOT NULL,
modifier_concept_id integer NULL,
quantity integer NULL,
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
procedure_source_value varchar(50) NULL,
procedure_source_concept_id integer NULL,
modifier_source_value varchar(50) NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE (
device_exposure_id integer NOT NULL,
person_id integer NOT NULL,
device_concept_id integer NOT NULL,
device_exposure_start_date date NOT NULL,
device_exposure_start_datetime datetime NULL,
device_exposure_end_date date NULL,
device_exposure_end_datetime datetime NULL,
device_type_concept_id integer NOT NULL,
unique_device_id varchar(255) NULL,
production_id varchar(255) NULL,
quantity integer NULL,
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
device_source_value varchar(50) NULL,
device_source_concept_id integer NULL,
unit_concept_id integer NULL,
unit_source_value varchar(50) NULL,
unit_source_concept_id integer NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.MEASUREMENT (
measurement_id integer NOT NULL,
person_id integer NOT NULL,
measurement_concept_id integer NOT NULL,
measurement_date date NOT NULL,
measurement_datetime datetime NULL,
measurement_time varchar(10) NULL,
measurement_type_concept_id integer NOT NULL,
operator_concept_id integer NULL,
value_as_number float NULL,
value_as_concept_id integer NULL,
unit_concept_id integer NULL,
range_low float NULL,
range_high float NULL,
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
measurement_source_value varchar(50) NULL,
measurement_source_concept_id integer NULL,
unit_source_value varchar(50) NULL,
unit_source_concept_id integer NULL,
value_source_value varchar(50) NULL,
measurement_event_id integer NULL,
meas_event_field_concept_id integer NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.OBSERVATION (
observation_id integer NOT NULL,
person_id integer NOT NULL,
observation_concept_id integer NOT NULL,
observation_date date NOT NULL,
observation_datetime datetime NULL,
observation_type_concept_id integer NOT NULL,
value_as_number float NULL,
value_as_string varchar(60) NULL,
value_as_concept_id Integer NULL,
qualifier_concept_id integer NULL,
unit_concept_id integer NULL,
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
observation_source_value varchar(50) NULL,
observation_source_concept_id integer NULL,
unit_source_value varchar(50) NULL,
qualifier_source_value varchar(50) NULL,
value_source_value varchar(50) NULL,
observation_event_id integer NULL,
obs_event_field_concept_id integer NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.DEATH (
person_id integer NOT NULL,
death_date date NOT NULL,
death_datetime datetime NULL,
death_type_concept_id integer NULL,
cause_concept_id integer NULL,
cause_source_value varchar(50) NULL,
cause_source_concept_id integer NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.NOTE (
note_id integer NOT NULL,
person_id integer NOT NULL,
note_date date NOT NULL,
note_datetime datetime NULL,
note_type_concept_id integer NOT NULL,
note_class_concept_id integer NOT NULL,
note_title varchar(250) NULL,
note_text varchar(MAX) NOT NULL,
encoding_concept_id integer NOT NULL,
language_concept_id integer NOT NULL,
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
note_source_value varchar(50) NULL,
note_event_id integer NULL,
note_event_field_concept_id integer NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.NOTE_NLP (
note_nlp_id integer NOT NULL,
note_id integer NOT NULL,
section_concept_id integer NULL,
snippet varchar(250) NULL,
"offset" varchar(50) NULL,
lexical_variant varchar(250) NOT NULL,
note_nlp_concept_id integer NULL,
note_nlp_source_concept_id integer NULL,
nlp_system varchar(250) NULL,
nlp_date date NOT NULL,
nlp_datetime datetime NULL,
term_exists varchar(1) NULL,
term_temporal varchar(50) NULL,
term_modifiers varchar(2000) NULL )
WITH (CLUSTERED INDEX(note_id));
CREATE TABLE @cdmDatabaseSchema.SPECIMEN (
specimen_id integer NOT NULL,
person_id integer NOT NULL,
specimen_concept_id integer NOT NULL,
specimen_type_concept_id integer NOT NULL,
specimen_date date NOT NULL,
specimen_datetime datetime NULL,
quantity float NULL,
unit_concept_id integer NULL,
anatomic_site_concept_id integer NULL,
disease_status_concept_id integer NULL,
specimen_source_id varchar(50) NULL,
specimen_source_value varchar(50) NULL,
unit_source_value varchar(50) NULL,
anatomic_site_source_value varchar(50) NULL,
disease_status_source_value varchar(50) NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP (
domain_concept_id_1 integer NOT NULL,
fact_id_1 integer NOT NULL,
domain_concept_id_2 integer NOT NULL,
fact_id_2 integer NOT NULL,
relationship_concept_id integer NOT NULL );
CREATE TABLE @cdmDatabaseSchema.LOCATION (
location_id integer NOT NULL,
address_1 varchar(50) NULL,
address_2 varchar(50) NULL,
city varchar(50) NULL,
state varchar(2) NULL,
zip varchar(9) NULL,
county varchar(20) NULL,
location_source_value varchar(50) NULL,
country_concept_id integer NULL,
country_source_value varchar(80) NULL,
latitude float NULL,
longitude float NULL )
WITH (CLUSTERED INDEX(location_id));
CREATE TABLE @cdmDatabaseSchema.CARE_SITE (
care_site_id integer NOT NULL,
care_site_name varchar(255) NULL,
place_of_service_concept_id integer NULL,
location_id integer NULL,
care_site_source_value varchar(50) NULL,
place_of_service_source_value varchar(50) NULL )
WITH (CLUSTERED INDEX(care_site_id));
CREATE TABLE @cdmDatabaseSchema.PROVIDER (
provider_id integer NOT NULL,
provider_name varchar(255) NULL,
npi varchar(20) NULL,
dea varchar(20) NULL,
specialty_concept_id integer NULL,
care_site_id integer NULL,
year_of_birth integer NULL,
gender_concept_id integer NULL,
provider_source_value varchar(50) NULL,
specialty_source_value varchar(50) NULL,
specialty_source_concept_id integer NULL,
gender_source_value varchar(50) NULL,
gender_source_concept_id integer NULL )
WITH (CLUSTERED INDEX(provider_id));
CREATE TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD (
payer_plan_period_id integer NOT NULL,
person_id integer NOT NULL,
payer_plan_period_start_date date NOT NULL,
payer_plan_period_end_date date NOT NULL,
payer_concept_id integer NULL,
payer_source_value varchar(50) NULL,
payer_source_concept_id integer NULL,
plan_concept_id integer NULL,
plan_source_value varchar(50) NULL,
plan_source_concept_id integer NULL,
sponsor_concept_id integer NULL,
sponsor_source_value varchar(50) NULL,
sponsor_source_concept_id integer NULL,
family_source_value varchar(50) NULL,
stop_reason_concept_id integer NULL,
stop_reason_source_value varchar(50) NULL,
stop_reason_source_concept_id integer NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.COST (
cost_id integer NOT NULL,
cost_event_id integer NOT NULL,
cost_domain_id varchar(20) NOT NULL,
cost_type_concept_id integer NOT NULL,
currency_concept_id integer NULL,
total_charge float NULL,
total_cost float NULL,
total_paid float NULL,
paid_by_payer float NULL,
paid_by_patient float NULL,
paid_patient_copay float NULL,
paid_patient_coinsurance float NULL,
paid_patient_deductible float NULL,
paid_by_primary float NULL,
paid_ingredient_cost float NULL,
paid_dispensing_fee float NULL,
payer_plan_period_id integer NULL,
amount_allowed float NULL,
revenue_code_concept_id integer NULL,
revenue_code_source_value varchar(50) NULL,
drg_concept_id integer NULL,
drg_source_value varchar(3) NULL );
CREATE TABLE @cdmDatabaseSchema.DRUG_ERA (
drug_era_id integer NOT NULL,
person_id integer NOT NULL,
drug_concept_id integer NOT NULL,
drug_era_start_date date NOT NULL,
drug_era_end_date date NOT NULL,
drug_exposure_count integer NULL,
gap_days integer NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.DOSE_ERA (
dose_era_id integer NOT NULL,
person_id integer NOT NULL,
drug_concept_id integer NOT NULL,
unit_concept_id integer NOT NULL,
dose_value float NOT NULL,
dose_era_start_date date NOT NULL,
dose_era_end_date date NOT NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.CONDITION_ERA (
condition_era_id integer NOT NULL,
person_id integer NOT NULL,
condition_concept_id integer NOT NULL,
condition_era_start_date date NOT NULL,
condition_era_end_date date NOT NULL,
condition_occurrence_count integer NULL )
WITH (CLUSTERED INDEX(person_id));
CREATE TABLE @cdmDatabaseSchema.EPISODE (
episode_id integer NOT NULL,
person_id integer NOT NULL,
episode_concept_id integer NOT NULL,
episode_start_date date NOT NULL,
episode_start_datetime datetime NULL,
episode_end_date date NULL,
episode_end_datetime datetime NULL,
episode_parent_id integer NULL,
episode_number integer NULL,
episode_object_concept_id integer NOT NULL,
episode_type_concept_id integer NOT NULL,
episode_source_value varchar(50) NULL,
episode_source_concept_id integer NULL );
CREATE TABLE @cdmDatabaseSchema.EPISODE_EVENT (
episode_id integer NOT NULL,
event_id integer NOT NULL,
episode_event_field_concept_id integer NOT NULL );
CREATE TABLE @cdmDatabaseSchema.METADATA (
metadata_id integer NOT NULL,
metadata_concept_id integer NOT NULL,
metadata_type_concept_id integer NOT NULL,
name varchar(250) NOT NULL,
value_as_string varchar(250) NULL,
value_as_concept_id integer NULL,
value_as_number float NULL,
metadata_date date NULL,
metadata_datetime datetime NULL )
WITH (CLUSTERED INDEX(metadata_concept_id));
CREATE TABLE @cdmDatabaseSchema.CDM_SOURCE (
cdm_source_name varchar(255) NOT NULL,
cdm_source_abbreviation varchar(25) NOT NULL,
cdm_holder varchar(255) NOT NULL,
source_description varchar(MAX) NULL,
source_documentation_reference varchar(255) NULL,
cdm_etl_reference varchar(255) NULL,
source_release_date date NOT NULL,
cdm_release_date date NOT NULL,
cdm_version varchar(10) NULL,
cdm_version_concept_id integer NOT NULL,
vocabulary_version varchar(20) NOT NULL )
WITH (CLUSTERED INDEX(cdm_version_concept_id));
CREATE TABLE @cdmDatabaseSchema.CONCEPT (
concept_id integer NOT NULL,
concept_name varchar(255) NOT NULL,
domain_id varchar(20) NOT NULL,
vocabulary_id varchar(20) NOT NULL,
concept_class_id varchar(20) NOT NULL,
standard_concept varchar(1) NULL,
concept_code varchar(50) NOT NULL,
valid_start_date date NOT NULL,
valid_end_date date NOT NULL,
invalid_reason varchar(1) NULL )
WITH (CLUSTERED INDEX(concept_id));
CREATE TABLE @cdmDatabaseSchema.VOCABULARY (
vocabulary_id varchar(20) NOT NULL,
vocabulary_name varchar(255) NOT NULL,
vocabulary_reference varchar(255) NULL,
vocabulary_version varchar(255) NULL,
vocabulary_concept_id integer NOT NULL )
WITH (CLUSTERED INDEX(vocabulary_id));
CREATE TABLE @cdmDatabaseSchema.DOMAIN (
domain_id varchar(20) NOT NULL,
domain_name varchar(255) NOT NULL,
domain_concept_id integer NOT NULL )
WITH (CLUSTERED INDEX(domain_id));
CREATE TABLE @cdmDatabaseSchema.CONCEPT_CLASS (
concept_class_id varchar(20) NOT NULL,
concept_class_name varchar(255) NOT NULL,
concept_class_concept_id integer NOT NULL )
WITH (CLUSTERED INDEX(concept_class_id));
CREATE TABLE @cdmDatabaseSchema.CONCEPT_RELATIONSHIP (
concept_id_1 integer NOT NULL,
concept_id_2 integer NOT NULL,
relationship_id varchar(20) NOT NULL,
valid_start_date date NOT NULL,
valid_end_date date NOT NULL,
invalid_reason varchar(1) NULL )
WITH (CLUSTERED INDEX(concept_id_1));
CREATE TABLE @cdmDatabaseSchema.RELATIONSHIP (
relationship_id varchar(20) NOT NULL,
relationship_name varchar(255) NOT NULL,
is_hierarchical varchar(1) NOT NULL,
defines_ancestry varchar(1) NOT NULL,
reverse_relationship_id varchar(20) NOT NULL,
relationship_concept_id integer NOT NULL )
WITH (CLUSTERED INDEX(relationship_id));
CREATE TABLE @cdmDatabaseSchema.CONCEPT_SYNONYM (
concept_id integer NOT NULL,
concept_synonym_name varchar(1000) NOT NULL,
language_concept_id integer NOT NULL )
WITH (CLUSTERED INDEX(concept_id));
CREATE TABLE @cdmDatabaseSchema.CONCEPT_ANCESTOR (
ancestor_concept_id integer NOT NULL,
descendant_concept_id integer NOT NULL,
min_levels_of_separation integer NOT NULL,
max_levels_of_separation integer NOT NULL )
WITH (CLUSTERED INDEX(ancestor_concept_id));
CREATE TABLE @cdmDatabaseSchema.SOURCE_TO_CONCEPT_MAP (
source_code varchar(50) NOT NULL,
source_concept_id integer NOT NULL,
source_vocabulary_id varchar(20) NOT NULL,
source_code_description varchar(255) NULL,
target_concept_id integer NOT NULL,
target_vocabulary_id varchar(20) NOT NULL,
valid_start_date date NOT NULL,
valid_end_date date NOT NULL,
invalid_reason varchar(1) NULL )
WITH (CLUSTERED INDEX(target_concept_id));
CREATE TABLE @cdmDatabaseSchema.DRUG_STRENGTH (
drug_concept_id integer NOT NULL,
ingredient_concept_id integer NOT NULL,
amount_value float NULL,
amount_unit_concept_id integer NULL,
numerator_value float NULL,
numerator_unit_concept_id integer NULL,
denominator_value float NULL,
denominator_unit_concept_id integer NULL,
box_size integer NULL,
valid_start_date date NOT NULL,
valid_end_date date NOT NULL,
invalid_reason varchar(1) NULL )
WITH (CLUSTERED INDEX(drug_concept_id));
CREATE TABLE @cdmDatabaseSchema.COHORT (
cohort_definition_id integer NOT NULL,
subject_id integer NOT NULL,
cohort_start_date date NOT NULL,
cohort_end_date date NOT NULL )
WITH (CLUSTERED INDEX(cohort_definition_id));
CREATE TABLE @cdmDatabaseSchema.COHORT_DEFINITION (
cohort_definition_id integer NOT NULL,
cohort_definition_name varchar(255) NOT NULL,
cohort_definition_description varchar(MAX) NULL,
definition_type_concept_id integer NOT NULL,
cohort_definition_syntax varchar(MAX) NULL,
subject_concept_id integer NOT NULL,
cohort_initiation_date date NULL )
WITH (CLUSTERED INDEX(cohort_definition_id));

84
inst/ddl/5.4/synapse/OMOPCDM_synapse_5.4_indices.sql Normal file
View File

@ -0,0 +1,84 @@
-- azure synapse OMOP CDM Indices
/************************
Standardized clinical data
************************/
CREATE INDEX idx_gender ON @cdmDatabaseSchema.person (gender_concept_id ASC);
CREATE INDEX idx_visit_concept_id_1 ON @cdmDatabaseSchema.visit_occurrence (visit_concept_id ASC);
CREATE INDEX idx_visit_det_concept_id_1 ON @cdmDatabaseSchema.visit_detail (visit_detail_concept_id ASC);
CREATE INDEX idx_visit_det_occ_id ON @cdmDatabaseSchema.visit_detail (visit_occurrence_id ASC);
CREATE INDEX idx_condition_concept_id_1 ON @cdmDatabaseSchema.condition_occurrence (condition_concept_id ASC);
CREATE INDEX idx_condition_visit_id_1 ON @cdmDatabaseSchema.condition_occurrence (visit_occurrence_id ASC);
CREATE INDEX idx_drug_concept_id_1 ON @cdmDatabaseSchema.drug_exposure (drug_concept_id ASC);
CREATE INDEX idx_drug_visit_id_1 ON @cdmDatabaseSchema.drug_exposure (visit_occurrence_id ASC);
CREATE INDEX idx_procedure_concept_id_1 ON @cdmDatabaseSchema.procedure_occurrence (procedure_concept_id ASC);
CREATE INDEX idx_procedure_visit_id_1 ON @cdmDatabaseSchema.procedure_occurrence (visit_occurrence_id ASC);
CREATE INDEX idx_device_concept_id_1 ON @cdmDatabaseSchema.device_exposure (device_concept_id ASC);
CREATE INDEX idx_device_visit_id_1 ON @cdmDatabaseSchema.device_exposure (visit_occurrence_id ASC);
CREATE INDEX idx_measurement_concept_id_1 ON @cdmDatabaseSchema.measurement (measurement_concept_id ASC);
CREATE INDEX idx_measurement_visit_id_1 ON @cdmDatabaseSchema.measurement (visit_occurrence_id ASC);
CREATE INDEX idx_observation_concept_id_1 ON @cdmDatabaseSchema.observation (observation_concept_id ASC);
CREATE INDEX idx_observation_visit_id_1 ON @cdmDatabaseSchema.observation (visit_occurrence_id ASC);
CREATE INDEX idx_note_concept_id_1 ON @cdmDatabaseSchema.note (note_type_concept_id ASC);
CREATE INDEX idx_note_visit_id_1 ON @cdmDatabaseSchema.note (visit_occurrence_id ASC);
CREATE INDEX idx_note_nlp_concept_id_1 ON @cdmDatabaseSchema.note_nlp (note_nlp_concept_id ASC);
CREATE INDEX idx_specimen_concept_id_1 ON @cdmDatabaseSchema.specimen (specimen_concept_id ASC);
CREATE INDEX idx_fact_relationship_id1 ON @cdmDatabaseSchema.fact_relationship (domain_concept_id_1 ASC);
CREATE INDEX idx_fact_relationship_id2 ON @cdmDatabaseSchema.fact_relationship (domain_concept_id_2 ASC);
CREATE INDEX idx_fact_relationship_id3 ON @cdmDatabaseSchema.fact_relationship (relationship_concept_id ASC);
/************************
Standardized health economics
************************/
CREATE INDEX idx_cost_event_id ON @cdmDatabaseSchema.cost (cost_event_id ASC);
/************************
Standardized derived elements
************************/
CREATE INDEX idx_drug_era_concept_id_1 ON @cdmDatabaseSchema.drug_era (drug_concept_id ASC);
CREATE INDEX idx_dose_era_concept_id_1 ON @cdmDatabaseSchema.dose_era (drug_concept_id ASC);
CREATE INDEX idx_condition_era_concept_id_1 ON @cdmDatabaseSchema.condition_era (condition_concept_id ASC);
/**************************
Standardized vocabularies
***************************/
CREATE INDEX idx_concept_code ON @cdmDatabaseSchema.concept (concept_code ASC);
CREATE INDEX idx_concept_vocabluary_id ON @cdmDatabaseSchema.concept (vocabulary_id ASC);
CREATE INDEX idx_concept_domain_id ON @cdmDatabaseSchema.concept (domain_id ASC);
CREATE INDEX idx_concept_class_id ON @cdmDatabaseSchema.concept (concept_class_id ASC);
CREATE INDEX idx_concept_relationship_id_2 ON @cdmDatabaseSchema.concept_relationship (concept_id_2 ASC);
CREATE INDEX idx_concept_relationship_id_3 ON @cdmDatabaseSchema.concept_relationship (relationship_id ASC);
CREATE INDEX idx_concept_ancestor_id_2 ON @cdmDatabaseSchema.concept_ancestor (descendant_concept_id ASC);
CREATE INDEX idx_source_to_concept_map_1 ON @cdmDatabaseSchema.source_to_concept_map (source_vocabulary_id ASC);
CREATE INDEX idx_source_to_concept_map_2 ON @cdmDatabaseSchema.source_to_concept_map (target_vocabulary_id ASC);
CREATE INDEX idx_source_to_concept_map_c ON @cdmDatabaseSchema.source_to_concept_map (source_code ASC);
CREATE INDEX idx_drug_strength_id_2 ON @cdmDatabaseSchema.drug_strength (ingredient_concept_id ASC);

57
inst/ddl/5.4/synapse/OMOPCDM_synapse_5.4_primary_keys.sql Normal file
View File

@ -0,0 +1,57 @@
-- azure synapse CDM Primary Key Constraints for OMOP Common Data Model 5.4
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT xpk_PERSON PRIMARY KEY NONCLUSTERED (person_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.OBSERVATION_PERIOD ADD CONSTRAINT xpk_OBSERVATION_PERIOD PRIMARY KEY NONCLUSTERED (observation_period_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT xpk_VISIT_OCCURRENCE PRIMARY KEY NONCLUSTERED (visit_occurrence_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT xpk_VISIT_DETAIL PRIMARY KEY NONCLUSTERED (visit_detail_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT xpk_CONDITION_OCCURRENCE PRIMARY KEY NONCLUSTERED (condition_occurrence_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT xpk_DRUG_EXPOSURE PRIMARY KEY NONCLUSTERED (drug_exposure_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT xpk_PROCEDURE_OCCURRENCE PRIMARY KEY NONCLUSTERED (procedure_occurrence_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT xpk_DEVICE_EXPOSURE PRIMARY KEY NONCLUSTERED (device_exposure_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT xpk_MEASUREMENT PRIMARY KEY NONCLUSTERED (measurement_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT xpk_OBSERVATION PRIMARY KEY NONCLUSTERED (observation_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT xpk_NOTE PRIMARY KEY NONCLUSTERED (note_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT xpk_NOTE_NLP PRIMARY KEY NONCLUSTERED (note_nlp_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.SPECIMEN ADD CONSTRAINT xpk_SPECIMEN PRIMARY KEY NONCLUSTERED (specimen_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.LOCATION ADD CONSTRAINT xpk_LOCATION PRIMARY KEY NONCLUSTERED (location_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT xpk_CARE_SITE PRIMARY KEY NONCLUSTERED (care_site_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT xpk_PROVIDER PRIMARY KEY NONCLUSTERED (provider_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT xpk_PAYER_PLAN_PERIOD PRIMARY KEY NONCLUSTERED (payer_plan_period_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.COST ADD CONSTRAINT xpk_COST PRIMARY KEY NONCLUSTERED (cost_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.DRUG_ERA ADD CONSTRAINT xpk_DRUG_ERA PRIMARY KEY NONCLUSTERED (drug_era_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT xpk_DOSE_ERA PRIMARY KEY NONCLUSTERED (dose_era_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT xpk_CONDITION_ERA PRIMARY KEY NONCLUSTERED (condition_era_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.EPISODE ADD CONSTRAINT xpk_EPISODE PRIMARY KEY NONCLUSTERED (episode_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT xpk_METADATA PRIMARY KEY NONCLUSTERED (metadata_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT xpk_CONCEPT PRIMARY KEY NONCLUSTERED (concept_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.VOCABULARY ADD CONSTRAINT xpk_VOCABULARY PRIMARY KEY NONCLUSTERED (vocabulary_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.DOMAIN ADD CONSTRAINT xpk_DOMAIN PRIMARY KEY NONCLUSTERED (domain_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.CONCEPT_CLASS ADD CONSTRAINT xpk_CONCEPT_CLASS PRIMARY KEY NONCLUSTERED (concept_class_id) NOT ENFORCED;
ALTER TABLE @cdmDatabaseSchema.RELATIONSHIP ADD CONSTRAINT xpk_RELATIONSHIP PRIMARY KEY NONCLUSTERED (relationship_id) NOT ENFORCED;