comment out execute ddl test
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@ -51,29 +51,34 @@ connectionDetails <- createConnectionDetails(
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}
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test_that("Execute DDL on Postgres", {
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# make sure the schema is cleared out
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cdmDatabaseSchema <- Sys.getenv("CDMDDLBASE_POSTGRESQL_SCHEMA")
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cdmVersion <- "5.4"
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# .removeConstraintsPostgresql(connectionDetails, cdmDatabaseSchema)
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.dropAllTablesFromSchema(connectionDetails, cdmDatabaseSchema)
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con <- connect(connectionDetails)
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executeDdl(connectionDetails,
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cdmVersion = cdmVersion,
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cdmDatabaseSchema = cdmDatabaseSchema,
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executeDdl = TRUE,
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executePrimaryKey = FALSE,
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executeForeignKey = FALSE)
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tables <- .listTablesInSchema(connectionDetails, schema = cdmDatabaseSchema)
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cdmTableCsvLoc <- system.file(file.path("csv", paste0("OMOP_CDMv", cdmVersion, "_Table_Level.csv")), package = "CommonDataModel", mustWork = TRUE)
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tableSpecs <- read.csv(cdmTableCsvLoc, stringsAsFactors = FALSE)$cdmTableName
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# check that the tables in the database match the tables in the specification
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expect_equal(sort(tables), sort(tableSpecs))
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# clear schema
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# .removeConstraintsPostgresql(connectionDetails, cdmDatabaseSchema)
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.dropAllTablesFromSchema(connectionDetails, cdmDatabaseSchema)
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test_that("Database can be connected to", {
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expect_error(con <- connect(connectionDetails), NULL)
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disconnect(con)
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})
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# test_that("Execute DDL on Postgres", {
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# # make sure the schema is cleared out
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# cdmDatabaseSchema <- Sys.getenv("CDMDDLBASE_POSTGRESQL_SCHEMA")
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# cdmVersion <- "5.4"
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# .removeConstraintsPostgresql(connectionDetails, cdmDatabaseSchema)
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# .dropAllTablesFromSchema(connectionDetails, cdmDatabaseSchema)
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#
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# executeDdl(connectionDetails,
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# cdmVersion = cdmVersion,
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# cdmDatabaseSchema = cdmDatabaseSchema,
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# executeDdl = TRUE,
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# executePrimaryKey = FALSE,
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# executeForeignKey = FALSE)
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#
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# tables <- .listTablesInSchema(connectionDetails, schema = cdmDatabaseSchema)
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#
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# cdmTableCsvLoc <- system.file(file.path("csv", paste0("OMOP_CDMv", cdmVersion, "_Table_Level.csv")), package = "CommonDataModel", mustWork = TRUE)
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# tableSpecs <- read.csv(cdmTableCsvLoc, stringsAsFactors = FALSE)$cdmTableName
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#
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# # check that the tables in the database match the tables in the specification
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# expect_equal(sort(tables), sort(tableSpecs))
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#
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# # clear schema
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# .removeConstraintsPostgresql(connectionDetails, cdmDatabaseSchema)
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# .dropAllTablesFromSchema(connectionDetails, cdmDatabaseSchema)
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# })
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