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OMOP
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Made changes to adhere to the new CDM changes for version 5.1 for Postgres

This commit is contained in:
Karthik Natarajan 2017-01-02 19:22:13 -05:00
parent aef6a3a550
commit 866c8c666b
1 changed files with 22 additions and 13 deletions
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23
PostgreSQL/OMOP CDM ddl - PostgreSQL.sql
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@ -229,7 +229,7 @@ CREATE TABLE person
year_of_birth INTEGER NOT NULL ,
month_of_birth INTEGER NULL,
day_of_birth INTEGER NULL,
time_of_birth VARCHAR(10) NULL,
datetime_of_birth TIMESTAMP NULL,
race_concept_id INTEGER NOT NULL,
ethnicity_concept_id INTEGER NOT NULL,
location_id INTEGER NULL,
@ -254,7 +254,9 @@ CREATE TABLE observation_period
observation_period_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
observation_period_start_date DATE NOT NULL ,
observation_period_start_datetime TIMESTAMP NOT NULL ,
observation_period_end_date DATE NOT NULL ,
observation_period_end_datetime TIMESTAMP NOT NULL ,
period_type_concept_id INTEGER NOT NULL
)
;
@ -268,7 +270,7 @@ CREATE TABLE specimen
specimen_concept_id INTEGER NOT NULL ,
specimen_type_concept_id INTEGER NOT NULL ,
specimen_date DATE NOT NULL ,
specimen_time VARCHAR(10) NULL ,
specimen_datetime TIMESTAMP NULL ,
quantity NUMERIC NULL ,
unit_concept_id INTEGER NULL ,
anatomic_site_concept_id INTEGER NULL ,
@ -302,9 +304,9 @@ CREATE TABLE visit_occurrence
person_id INTEGER NOT NULL ,
visit_concept_id INTEGER NOT NULL ,
visit_start_date DATE NOT NULL ,
visit_start_time VARCHAR(10) NULL ,
visit_start_datetime TIMESTAMP NULL ,
visit_end_date DATE NOT NULL ,
visit_end_time VARCHAR(10) NULL ,
visit_end_datetime TIMESTAMP NULL ,
visit_type_concept_id INTEGER NOT NULL ,
provider_id INTEGER NULL,
care_site_id INTEGER NULL,
@ -321,6 +323,7 @@ CREATE TABLE procedure_occurrence
person_id INTEGER NOT NULL ,
procedure_concept_id INTEGER NOT NULL ,
procedure_date DATE NOT NULL ,
procedure_datetime TIMESTAMP NOT NULL ,
procedure_type_concept_id INTEGER NOT NULL ,
modifier_concept_id INTEGER NULL ,
quantity INTEGER NULL ,
@ -340,7 +343,9 @@ CREATE TABLE drug_exposure
person_id INTEGER NOT NULL ,
drug_concept_id INTEGER NOT NULL ,
drug_exposure_start_date DATE NOT NULL ,
drug_exposure_start_datetime TIMESTAMP NOT NULL ,
drug_exposure_end_date DATE NULL ,
drug_exposure_end_datetime TIMESTAMP NULL ,
drug_type_concept_id INTEGER NOT NULL ,
stop_reason VARCHAR(20) NULL ,
refills INTEGER NULL ,
@ -367,7 +372,9 @@ CREATE TABLE device_exposure
person_id INTEGER NOT NULL ,
device_concept_id INTEGER NOT NULL ,
device_exposure_start_date DATE NOT NULL ,
device_exposure_start_datetime TIMESTAMP NOT NULL ,
device_exposure_end_date DATE NULL ,
device_exposure_end_datetime TIMESTAMP NULL ,
device_type_concept_id INTEGER NOT NULL ,
unique_device_id VARCHAR(50) NULL ,
quantity INTEGER NULL ,
@ -385,7 +392,9 @@ CREATE TABLE condition_occurrence
person_id INTEGER NOT NULL ,
condition_concept_id INTEGER NOT NULL ,
condition_start_date DATE NOT NULL ,
condition_start_datetime TIMESTAMP NOT NULL ,
condition_end_date DATE NULL ,
condition_end_datetime TIMESTAMP NULL ,
condition_type_concept_id INTEGER NOT NULL ,
stop_reason VARCHAR(20) NULL ,
provider_id INTEGER NULL ,
@ -403,7 +412,7 @@ CREATE TABLE measurement
person_id INTEGER NOT NULL ,
measurement_concept_id INTEGER NOT NULL ,
measurement_date DATE NOT NULL ,
measurement_time VARCHAR(10) NULL ,
measurement_datetime TIMESTAMP NULL ,
measurement_type_concept_id INTEGER NOT NULL ,
operator_concept_id INTEGER NULL ,
value_as_number NUMERIC NULL ,
@ -427,7 +436,7 @@ CREATE TABLE note
note_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
note_date DATE NOT NULL ,
note_time VARCHAR(10) NULL ,
note_datetime TIMESTAMP NULL ,
note_type_concept_id INTEGER NOT NULL ,
note_text TEXT NOT NULL ,
provider_id INTEGER NULL ,
@ -444,7 +453,7 @@ CREATE TABLE observation
person_id INTEGER NOT NULL ,
observation_concept_id INTEGER NOT NULL ,
observation_date DATE NOT NULL ,
observation_time VARCHAR(10) NULL ,
observation_datetime TIMESTAMP NULL ,
observation_type_concept_id INTEGER NOT NULL ,
value_as_number NUMERIC NULL ,
value_as_string VARCHAR(60) NULL ,