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OMOP
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Regenerate DDLs for CDM 5.4

This commit is contained in:
Clair Blacketer 2021-09-22 15:50:21 -04:00
parent 46da3238af
commit 8d7d0199af
18 changed files with 280 additions and 119 deletions
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1
.gitignore vendored
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@ -14,3 +14,4 @@ extras/CodeToRun.R
ehthumbs.db
Thumbs.db
extras/codeToRun.R
output/

2
R/buildRelease.R
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@ -73,7 +73,7 @@ buildRelease <- function(cdmVersions = listSupportedVersions(),
#'
buildReleaseZip <- function(cdmVersion,
targetDialect = listSupportedDialects(),
outputfolder = file.path(getwd(), "inst", "ddl")){
outputfolder = file.path(getwd(), "output")){
# argument checks
stopifnot(is.character(cdmVersion), length(cdmVersion) == 1, cdmVersion %in% listSupportedVersions())

24
inst/ddl/5.4/bigquery/OMOPCDM_bigquery_5.4_constraints.sql
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@ -102,6 +102,14 @@ alter table @cdmDatabaseSchema.procedure_occurrence add constraint fpk_procedure
alter table @cdmDatabaseSchema.procedure_occurrence add constraint fpk_procedure_occurrence_modifier_concept_id foreign key (modifier_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.procedure_occurrence add constraint fpk_procedure_occurrence_provider_id foreign key (provider_id) references @cdmDatabaseSchema.provider (provider_id);
alter table @cdmDatabaseSchema.procedure_occurrence add constraint fpk_procedure_occurrence_visit_occurrence_id foreign key (visit_occurrence_id) references @cdmDatabaseSchema.visit_occurrence (visit_occurrence_id);
alter table @cdmDatabaseSchema.procedure_occurrence add constraint fpk_procedure_occurrence_visit_detail_id foreign key (visit_detail_id) references @cdmDatabaseSchema.visit_detail (visit_detail_id);
alter table @cdmDatabaseSchema.procedure_occurrence add constraint fpk_procedure_occurrence_procedure_source_concept_id foreign key (procedure_source_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.device_exposure add constraint fpk_device_exposure_person_id foreign key (person_id) references @cdmDatabaseSchema.person (person_id);
alter table @cdmDatabaseSchema.device_exposure add constraint fpk_device_exposure_device_concept_id foreign key (device_concept_id) references @cdmDatabaseSchema.concept (concept_id);
@ -116,6 +124,10 @@ alter table @cdmDatabaseSchema.device_exposure add constraint fpk_device_exposur
alter table @cdmDatabaseSchema.device_exposure add constraint fpk_device_exposure_device_source_concept_id foreign key (device_source_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.device_exposure add constraint fpk_device_exposure_unit_concept_id foreign key (unit_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.device_exposure add constraint fpk_device_exposure_unit_source_concept_id foreign key (unit_source_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.measurement add constraint fpk_measurement_person_id foreign key (person_id) references @cdmDatabaseSchema.person (person_id);
alter table @cdmDatabaseSchema.measurement add constraint fpk_measurement_measurement_concept_id foreign key (measurement_concept_id) references @cdmDatabaseSchema.concept (concept_id);
@ -172,8 +184,6 @@ alter table @cdmDatabaseSchema.death add constraint fpk_death_cause_source_conce
alter table @cdmDatabaseSchema.note add constraint fpk_note_person_id foreign key (person_id) references @cdmDatabaseSchema.person (person_id);
alter table @cdmDatabaseSchema.note add constraint fpk_note_note_event_field_concept_id foreign key (note_event_field_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.note add constraint fpk_note_note_type_concept_id foreign key (note_type_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.note add constraint fpk_note_note_class_concept_id foreign key (note_class_concept_id) references @cdmDatabaseSchema.concept (concept_id);
@ -188,6 +198,8 @@ alter table @cdmDatabaseSchema.note add constraint fpk_note_visit_occurrence_id
alter table @cdmDatabaseSchema.note add constraint fpk_note_visit_detail_id foreign key (visit_detail_id) references @cdmDatabaseSchema.visit_detail (visit_detail_id);
alter table @cdmDatabaseSchema.note add constraint fpk_note_note_event_field_concept_id foreign key (note_event_field_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.note_nlp add constraint fpk_note_nlp_section_concept_id foreign key (section_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.note_nlp add constraint fpk_note_nlp_note_nlp_concept_id foreign key (note_nlp_concept_id) references @cdmDatabaseSchema.concept (concept_id);
@ -212,6 +224,8 @@ alter table @cdmDatabaseSchema.fact_relationship add constraint fpk_fact_relatio
alter table @cdmDatabaseSchema.fact_relationship add constraint fpk_fact_relationship_relationship_concept_id foreign key (relationship_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.location add constraint fpk_location_country_concept_id foreign key (country_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.care_site add constraint fpk_care_site_place_of_service_concept_id foreign key (place_of_service_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.care_site add constraint fpk_care_site_location_id foreign key (location_id) references @cdmDatabaseSchema.location (location_id);
@ -266,6 +280,8 @@ alter table @cdmDatabaseSchema.dose_era add constraint fpk_dose_era_drug_concept
alter table @cdmDatabaseSchema.dose_era add constraint fpk_dose_era_unit_concept_id foreign key (unit_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.condition_era add constraint fpk_condition_era_person_id foreign key (person_id) references @cdmDatabaseSchema.person (person_id);
alter table @cdmDatabaseSchema.condition_era add constraint fpk_condition_era_condition_concept_id foreign key (condition_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.episode add constraint fpk_episode_person_id foreign key (person_id) references @cdmDatabaseSchema.person (person_id);
@ -288,6 +304,8 @@ alter table @cdmDatabaseSchema.metadata add constraint fpk_metadata_metadata_typ
alter table @cdmDatabaseSchema.metadata add constraint fpk_metadata_value_as_concept_id foreign key (value_as_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.cdm_source add constraint fpk_cdm_source_cdm_version_concept_id foreign key (cdm_version_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.concept add constraint fpk_concept_domain_id foreign key (domain_id) references @cdmDatabaseSchema.domain (domain_id);
alter table @cdmDatabaseSchema.concept add constraint fpk_concept_vocabulary_id foreign key (vocabulary_id) references @cdmDatabaseSchema.vocabulary (vocabulary_id);
@ -332,6 +350,8 @@ alter table @cdmDatabaseSchema.drug_strength add constraint fpk_drug_strength_nu
alter table @cdmDatabaseSchema.drug_strength add constraint fpk_drug_strength_denominator_unit_concept_id foreign key (denominator_unit_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.cohort_definition add constraint fpk_cohort_definition_cohort_definition_id foreign key (cohort_definition_id) references @cdmDatabaseSchema.cohort (cohort_definition_id);
alter table @cdmDatabaseSchema.cohort_definition add constraint fpk_cohort_definition_definition_type_concept_id foreign key (definition_type_concept_id) references @cdmDatabaseSchema.concept (concept_id);
alter table @cdmDatabaseSchema.cohort_definition add constraint fpk_cohort_definition_subject_concept_id foreign key (subject_concept_id) references @cdmDatabaseSchema.concept (concept_id);

14
inst/ddl/5.4/bigquery/OMOPCDM_bigquery_5.4_ddl.sql
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@ -123,6 +123,8 @@ create table @cdmDatabaseSchema.procedure_occurrence (
procedure_concept_id INT64 not null,
procedure_date date not null,
procedure_datetime datetime null,
procedure_end_date date null,
procedure_end_datetime datetime null,
procedure_type_concept_id INT64 not null,
modifier_concept_id INT64,
quantity INT64,
@ -131,9 +133,7 @@ create table @cdmDatabaseSchema.procedure_occurrence (
visit_detail_id INT64,
procedure_source_value STRING,
procedure_source_concept_id INT64,
modifier_source_value STRING,
procedure_status_source_value STRING,
procedure_status_concept_id INT64 not null );
modifier_source_value STRING );
--HINT DISTRIBUTE ON KEY (person_id)
create table @cdmDatabaseSchema.device_exposure (
@ -221,8 +221,6 @@ create table @cdmDatabaseSchema.death (
create table @cdmDatabaseSchema.note (
note_id INT64 not null,
person_id INT64 not null,
note_event_id INT64,
note_event_field_concept_id INT64,
note_date date not null,
note_datetime datetime null,
note_type_concept_id INT64 not null,
@ -234,7 +232,9 @@ create table @cdmDatabaseSchema.note (
provider_id INT64,
visit_occurrence_id INT64,
visit_detail_id INT64,
note_source_value STRING );
note_source_value STRING,
note_event_id INT64,
note_event_field_concept_id INT64 );
--HINT DISTRIBUTE ON RANDOM
create table @cdmDatabaseSchema.note_nlp (
@ -458,7 +458,7 @@ create table @cdmDatabaseSchema.concept (
create table @cdmDatabaseSchema.vocabulary (
vocabulary_id STRING not null,
vocabulary_name STRING not null,
vocabulary_reference STRING not null,
vocabulary_reference STRING,
vocabulary_version STRING,
vocabulary_concept_id INT64 not null );

24
inst/ddl/5.4/impala/OMOPCDM_impala_5.4_constraints.sql
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@ -102,6 +102,14 @@ ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_modifier_concept_id FOREIGN KEY (modifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_procedure_source_concept_id FOREIGN KEY (procedure_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_concept_id FOREIGN KEY (device_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -116,6 +124,10 @@ ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSUR
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_source_concept_id FOREIGN KEY (device_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_unit_source_concept_id FOREIGN KEY (unit_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_concept_id FOREIGN KEY (measurement_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -172,8 +184,6 @@ ALTER TABLE @cdmDatabaseSchema.DEATH ADD CONSTRAINT fpk_DEATH_cause_source_conce
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_event_field_concept_id FOREIGN KEY (note_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_type_concept_id FOREIGN KEY (note_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_class_concept_id FOREIGN KEY (note_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -188,6 +198,8 @@ ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_occurrence_id
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_event_field_concept_id FOREIGN KEY (note_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_section_concept_id FOREIGN KEY (section_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_note_nlp_concept_id FOREIGN KEY (note_nlp_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -212,6 +224,8 @@ ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIO
ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.`location` ADD CONSTRAINT fpk_LOCATION_country_concept_id FOREIGN KEY (country_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_place_of_service_concept_id FOREIGN KEY (place_of_service_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_location_id FOREIGN KEY (location_id) REFERENCES @cdmDatabaseSchema.`location` (LOCATION_ID);
@ -266,6 +280,8 @@ ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_drug_concept
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.EPISODE ADD CONSTRAINT fpk_EPISODE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
@ -288,6 +304,8 @@ ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_metadata_typ
ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CDM_SOURCE ADD CONSTRAINT fpk_CDM_SOURCE_cdm_version_concept_id FOREIGN KEY (cdm_version_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_domain_id FOREIGN KEY (domain_id) REFERENCES @cdmDatabaseSchema.DOMAIN (DOMAIN_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_vocabulary_id FOREIGN KEY (vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
@ -332,6 +350,8 @@ ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_nu
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_denominator_unit_concept_id FOREIGN KEY (denominator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_cohort_definition_id FOREIGN KEY (cohort_definition_id) REFERENCES @cdmDatabaseSchema.COHORT (COHORT_DEFINITION_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_definition_type_concept_id FOREIGN KEY (definition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_subject_concept_id FOREIGN KEY (subject_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);

22
inst/ddl/5.4/impala/OMOPCDM_impala_5.4_ddl.sql
View File

@ -123,6 +123,8 @@ CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE (
procedure_concept_id INT,
procedure_date TIMESTAMP,
procedure_datetime TIMESTAMP,
procedure_end_date TIMESTAMP,
procedure_end_datetime TIMESTAMP,
procedure_type_concept_id INT,
modifier_concept_id integer NULL,
quantity integer NULL,
@ -131,9 +133,7 @@ CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE (
visit_detail_id integer NULL,
procedure_source_value VARCHAR(50),
procedure_source_concept_id integer NULL,
modifier_source_value VARCHAR(50),
procedure_status_source_value VARCHAR(50),
procedure_status_concept_id INT );
modifier_source_value VARCHAR(50) );
--HINT DISTRIBUTE ON KEY (person_id)
CREATE TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE (
@ -221,8 +221,6 @@ CREATE TABLE @cdmDatabaseSchema.DEATH (
CREATE TABLE @cdmDatabaseSchema.NOTE (
note_id INT,
person_id INT,
note_event_id BIGINT,
note_event_field_concept_id integer NULL,
note_date TIMESTAMP,
note_datetime TIMESTAMP,
note_type_concept_id INT,
@ -234,7 +232,9 @@ CREATE TABLE @cdmDatabaseSchema.NOTE (
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
note_source_value VARCHAR(50) );
note_source_value VARCHAR(50),
note_event_id BIGINT,
note_event_field_concept_id integer NULL );
--HINT DISTRIBUTE ON RANDOM
CREATE TABLE @cdmDatabaseSchema.NOTE_NLP (
@ -395,14 +395,14 @@ CREATE TABLE @cdmDatabaseSchema.CONDITION_ERA (
--HINT DISTRIBUTE ON KEY (person_id)
CREATE TABLE @cdmDatabaseSchema.EPISODE (
episode_id INT,
person_id INT,
episode_id BIGINT,
person_id BIGINT,
episode_concept_id INT,
episode_start_date TIMESTAMP,
episode_start_datetime TIMESTAMP,
episode_end_date TIMESTAMP,
episode_end_datetime TIMESTAMP,
episode_parent_id integer NULL,
episode_parent_id BIGINT,
episode_number integer NULL,
episode_object_concept_id INT,
episode_type_concept_id INT,
@ -411,8 +411,8 @@ CREATE TABLE @cdmDatabaseSchema.EPISODE (
--HINT DISTRIBUTE ON RANDOM
CREATE TABLE @cdmDatabaseSchema.EPISODE_EVENT (
episode_id INT,
event_id INT,
episode_id BIGINT,
event_id BIGINT,
episode_event_field_concept_id INT );
--HINT DISTRIBUTE ON RANDOM

24
inst/ddl/5.4/netezza/OMOPCDM_netezza_5.4_constraints.sql
View File

@ -102,6 +102,14 @@ ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_modifier_concept_id FOREIGN KEY (modifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_procedure_source_concept_id FOREIGN KEY (procedure_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_concept_id FOREIGN KEY (device_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -116,6 +124,10 @@ ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSUR
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_source_concept_id FOREIGN KEY (device_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_unit_source_concept_id FOREIGN KEY (unit_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_concept_id FOREIGN KEY (measurement_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -172,8 +184,6 @@ ALTER TABLE @cdmDatabaseSchema.DEATH ADD CONSTRAINT fpk_DEATH_cause_source_conce
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_event_field_concept_id FOREIGN KEY (note_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_type_concept_id FOREIGN KEY (note_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_class_concept_id FOREIGN KEY (note_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -188,6 +198,8 @@ ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_occurrence_id
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_event_field_concept_id FOREIGN KEY (note_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_section_concept_id FOREIGN KEY (section_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_note_nlp_concept_id FOREIGN KEY (note_nlp_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -212,6 +224,8 @@ ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIO
ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.LOCATION ADD CONSTRAINT fpk_LOCATION_country_concept_id FOREIGN KEY (country_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_place_of_service_concept_id FOREIGN KEY (place_of_service_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_location_id FOREIGN KEY (location_id) REFERENCES @cdmDatabaseSchema.LOCATION (LOCATION_ID);
@ -266,6 +280,8 @@ ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_drug_concept
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.EPISODE ADD CONSTRAINT fpk_EPISODE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
@ -288,6 +304,8 @@ ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_metadata_typ
ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CDM_SOURCE ADD CONSTRAINT fpk_CDM_SOURCE_cdm_version_concept_id FOREIGN KEY (cdm_version_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_domain_id FOREIGN KEY (domain_id) REFERENCES @cdmDatabaseSchema.DOMAIN (DOMAIN_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_vocabulary_id FOREIGN KEY (vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
@ -332,6 +350,8 @@ ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_nu
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_denominator_unit_concept_id FOREIGN KEY (denominator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_cohort_definition_id FOREIGN KEY (cohort_definition_id) REFERENCES @cdmDatabaseSchema.COHORT (COHORT_DEFINITION_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_definition_type_concept_id FOREIGN KEY (definition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_subject_concept_id FOREIGN KEY (subject_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);

28
inst/ddl/5.4/netezza/OMOPCDM_netezza_5.4_ddl.sql
View File

@ -64,8 +64,8 @@ CREATE TABLE @cdmDatabaseSchema.VISIT_DETAIL (
visit_detail_source_value varchar(50) NULL,
visit_detail_source_concept_id Integer NULL,
admitted_from_concept_id Integer NULL,
admitted_from_source_value Varchar(50) NULL,
discharged_to_source_value Varchar(50) NULL,
admitted_from_source_value varchar(50) NULL,
discharged_to_source_value varchar(50) NULL,
discharged_to_concept_id integer NULL,
preceding_visit_detail_id integer NULL,
parent_visit_detail_id integer NULL,
@ -123,6 +123,8 @@ CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE (
procedure_concept_id integer NOT NULL,
procedure_date date NOT NULL,
procedure_datetime TIMESTAMP NULL,
procedure_end_date date NULL,
procedure_end_datetime TIMESTAMP NULL,
procedure_type_concept_id integer NOT NULL,
modifier_concept_id integer NULL,
quantity integer NULL,
@ -131,9 +133,7 @@ CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE (
visit_detail_id integer NULL,
procedure_source_value varchar(50) NULL,
procedure_source_concept_id integer NULL,
modifier_source_value varchar(50) NULL,
procedure_status_source_value varchar(50) NULL,
procedure_status_concept_id integer NOT NULL );
modifier_source_value varchar(50) NULL );
--HINT DISTRIBUTE ON KEY (person_id)
CREATE TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE (
@ -221,8 +221,6 @@ CREATE TABLE @cdmDatabaseSchema.DEATH (
CREATE TABLE @cdmDatabaseSchema.NOTE (
note_id integer NOT NULL,
person_id integer NOT NULL,
note_event_id bigint NULL,
note_event_field_concept_id integer NULL,
note_date date NOT NULL,
note_datetime TIMESTAMP NULL,
note_type_concept_id integer NOT NULL,
@ -234,7 +232,9 @@ CREATE TABLE @cdmDatabaseSchema.NOTE (
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
note_source_value varchar(50) NULL );
note_source_value varchar(50) NULL,
note_event_id bigint NULL,
note_event_field_concept_id integer NULL );
--HINT DISTRIBUTE ON RANDOM
CREATE TABLE @cdmDatabaseSchema.NOTE_NLP (
@ -395,14 +395,14 @@ CREATE TABLE @cdmDatabaseSchema.CONDITION_ERA (
--HINT DISTRIBUTE ON KEY (person_id)
CREATE TABLE @cdmDatabaseSchema.EPISODE (
episode_id integer NOT NULL,
person_id integer NOT NULL,
episode_id bigint NOT NULL,
person_id bigint NOT NULL,
episode_concept_id integer NOT NULL,
episode_start_date date NOT NULL,
episode_start_datetime TIMESTAMP NULL,
episode_end_date date NULL,
episode_end_datetime TIMESTAMP NULL,
episode_parent_id integer NULL,
episode_parent_id bigint NULL,
episode_number integer NULL,
episode_object_concept_id integer NOT NULL,
episode_type_concept_id integer NOT NULL,
@ -411,8 +411,8 @@ CREATE TABLE @cdmDatabaseSchema.EPISODE (
--HINT DISTRIBUTE ON RANDOM
CREATE TABLE @cdmDatabaseSchema.EPISODE_EVENT (
episode_id integer NOT NULL,
event_id integer NOT NULL,
episode_id bigint NOT NULL,
event_id bigint NOT NULL,
episode_event_field_concept_id integer NOT NULL );
--HINT DISTRIBUTE ON RANDOM
@ -458,7 +458,7 @@ CREATE TABLE @cdmDatabaseSchema.CONCEPT (
CREATE TABLE @cdmDatabaseSchema.VOCABULARY (
vocabulary_id varchar(20) NOT NULL,
vocabulary_name varchar(255) NOT NULL,
vocabulary_reference varchar(255) NOT NULL,
vocabulary_reference varchar(255) NULL,
vocabulary_version varchar(255) NULL,
vocabulary_concept_id integer NOT NULL );

24
inst/ddl/5.4/oracle/OMOPCDM_oracle_5.4_constraints.sql
View File

@ -102,6 +102,14 @@ ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_modifier_concept_id FOREIGN KEY (modifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_procedure_source_concept_id FOREIGN KEY (procedure_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_concept_id FOREIGN KEY (device_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -116,6 +124,10 @@ ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSUR
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_source_concept_id FOREIGN KEY (device_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_unit_source_concept_id FOREIGN KEY (unit_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_concept_id FOREIGN KEY (measurement_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -172,8 +184,6 @@ ALTER TABLE @cdmDatabaseSchema.DEATH ADD CONSTRAINT fpk_DEATH_cause_source_conce
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_event_field_concept_id FOREIGN KEY (note_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_type_concept_id FOREIGN KEY (note_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_class_concept_id FOREIGN KEY (note_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -188,6 +198,8 @@ ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_occurrence_id
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_event_field_concept_id FOREIGN KEY (note_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_section_concept_id FOREIGN KEY (section_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_note_nlp_concept_id FOREIGN KEY (note_nlp_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -212,6 +224,8 @@ ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIO
ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.LOCATION ADD CONSTRAINT fpk_LOCATION_country_concept_id FOREIGN KEY (country_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_place_of_service_concept_id FOREIGN KEY (place_of_service_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_location_id FOREIGN KEY (location_id) REFERENCES @cdmDatabaseSchema.LOCATION (LOCATION_ID);
@ -266,6 +280,8 @@ ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_drug_concept
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.EPISODE ADD CONSTRAINT fpk_EPISODE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
@ -288,6 +304,8 @@ ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_metadata_typ
ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CDM_SOURCE ADD CONSTRAINT fpk_CDM_SOURCE_cdm_version_concept_id FOREIGN KEY (cdm_version_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_domain_id FOREIGN KEY (domain_id) REFERENCES @cdmDatabaseSchema.DOMAIN (DOMAIN_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_vocabulary_id FOREIGN KEY (vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
@ -332,6 +350,8 @@ ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_nu
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_denominator_unit_concept_id FOREIGN KEY (denominator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_cohort_definition_id FOREIGN KEY (cohort_definition_id) REFERENCES @cdmDatabaseSchema.COHORT (COHORT_DEFINITION_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_definition_type_concept_id FOREIGN KEY (definition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_subject_concept_id FOREIGN KEY (subject_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);

28
inst/ddl/5.4/oracle/OMOPCDM_oracle_5.4_ddl.sql
View File

@ -64,8 +64,8 @@ CREATE TABLE @cdmDatabaseSchema.VISIT_DETAIL (
visit_detail_source_value varchar(50) NULL,
visit_detail_source_concept_id Integer NULL,
admitted_from_concept_id Integer NULL,
admitted_from_source_value Varchar(50) NULL,
discharged_to_source_value Varchar(50) NULL,
admitted_from_source_value varchar(50) NULL,
discharged_to_source_value varchar(50) NULL,
discharged_to_concept_id integer NULL,
preceding_visit_detail_id integer NULL,
parent_visit_detail_id integer NULL,
@ -123,6 +123,8 @@ CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE (
procedure_concept_id integer NOT NULL,
procedure_date date NOT NULL,
procedure_datetime TIMESTAMP NULL,
procedure_end_date date NULL,
procedure_end_datetime TIMESTAMP NULL,
procedure_type_concept_id integer NOT NULL,
modifier_concept_id integer NULL,
quantity integer NULL,
@ -131,9 +133,7 @@ CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE (
visit_detail_id integer NULL,
procedure_source_value varchar(50) NULL,
procedure_source_concept_id integer NULL,
modifier_source_value varchar(50) NULL,
procedure_status_source_value varchar(50) NULL,
procedure_status_concept_id integer NOT NULL );
modifier_source_value varchar(50) NULL );
--HINT DISTRIBUTE ON KEY (person_id)
CREATE TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE (
@ -221,8 +221,6 @@ CREATE TABLE @cdmDatabaseSchema.DEATH (
CREATE TABLE @cdmDatabaseSchema.NOTE (
note_id integer NOT NULL,
person_id integer NOT NULL,
note_event_id NUMBER(19) NULL,
note_event_field_concept_id integer NULL,
note_date date NOT NULL,
note_datetime TIMESTAMP NULL,
note_type_concept_id integer NOT NULL,
@ -234,7 +232,9 @@ CREATE TABLE @cdmDatabaseSchema.NOTE (
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
note_source_value varchar(50) NULL );
note_source_value varchar(50) NULL,
note_event_id NUMBER(19) NULL,
note_event_field_concept_id integer NULL );
--HINT DISTRIBUTE ON RANDOM
CREATE TABLE @cdmDatabaseSchema.NOTE_NLP (
@ -395,14 +395,14 @@ CREATE TABLE @cdmDatabaseSchema.CONDITION_ERA (
--HINT DISTRIBUTE ON KEY (person_id)
CREATE TABLE @cdmDatabaseSchema.EPISODE (
episode_id integer NOT NULL,
person_id integer NOT NULL,
episode_id NUMBER(19) NOT NULL,
person_id NUMBER(19) NOT NULL,
episode_concept_id integer NOT NULL,
episode_start_date date NOT NULL,
episode_start_datetime TIMESTAMP NULL,
episode_end_date date NULL,
episode_end_datetime TIMESTAMP NULL,
episode_parent_id integer NULL,
episode_parent_id NUMBER(19) NULL,
episode_number integer NULL,
episode_object_concept_id integer NOT NULL,
episode_type_concept_id integer NOT NULL,
@ -411,8 +411,8 @@ CREATE TABLE @cdmDatabaseSchema.EPISODE (
--HINT DISTRIBUTE ON RANDOM
CREATE TABLE @cdmDatabaseSchema.EPISODE_EVENT (
episode_id integer NOT NULL,
event_id integer NOT NULL,
episode_id NUMBER(19) NOT NULL,
event_id NUMBER(19) NOT NULL,
episode_event_field_concept_id integer NOT NULL );
--HINT DISTRIBUTE ON RANDOM
@ -458,7 +458,7 @@ CREATE TABLE @cdmDatabaseSchema.CONCEPT (
CREATE TABLE @cdmDatabaseSchema.VOCABULARY (
vocabulary_id varchar(20) NOT NULL,
vocabulary_name varchar(255) NOT NULL,
vocabulary_reference varchar(255) NOT NULL,
vocabulary_reference varchar(255) NULL,
vocabulary_version varchar(255) NULL,
vocabulary_concept_id integer NOT NULL );

24
inst/ddl/5.4/pdw/OMOPCDM_pdw_5.4_constraints.sql
View File

@ -102,6 +102,14 @@ ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_modifier_concept_id FOREIGN KEY (modifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_procedure_source_concept_id FOREIGN KEY (procedure_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_concept_id FOREIGN KEY (device_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -116,6 +124,10 @@ ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSUR
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_source_concept_id FOREIGN KEY (device_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_unit_source_concept_id FOREIGN KEY (unit_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_concept_id FOREIGN KEY (measurement_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -172,8 +184,6 @@ ALTER TABLE @cdmDatabaseSchema.DEATH ADD CONSTRAINT fpk_DEATH_cause_source_conce
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_event_field_concept_id FOREIGN KEY (note_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_type_concept_id FOREIGN KEY (note_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_class_concept_id FOREIGN KEY (note_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -188,6 +198,8 @@ ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_occurrence_id
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_event_field_concept_id FOREIGN KEY (note_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_section_concept_id FOREIGN KEY (section_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_note_nlp_concept_id FOREIGN KEY (note_nlp_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -212,6 +224,8 @@ ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIO
ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.LOCATION ADD CONSTRAINT fpk_LOCATION_country_concept_id FOREIGN KEY (country_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_place_of_service_concept_id FOREIGN KEY (place_of_service_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_location_id FOREIGN KEY (location_id) REFERENCES @cdmDatabaseSchema.LOCATION (LOCATION_ID);
@ -266,6 +280,8 @@ ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_drug_concept
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.EPISODE ADD CONSTRAINT fpk_EPISODE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
@ -288,6 +304,8 @@ ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_metadata_typ
ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CDM_SOURCE ADD CONSTRAINT fpk_CDM_SOURCE_cdm_version_concept_id FOREIGN KEY (cdm_version_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_domain_id FOREIGN KEY (domain_id) REFERENCES @cdmDatabaseSchema.DOMAIN (DOMAIN_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_vocabulary_id FOREIGN KEY (vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
@ -332,6 +350,8 @@ ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_nu
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_denominator_unit_concept_id FOREIGN KEY (denominator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_cohort_definition_id FOREIGN KEY (cohort_definition_id) REFERENCES @cdmDatabaseSchema.COHORT (COHORT_DEFINITION_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_definition_type_concept_id FOREIGN KEY (definition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_subject_concept_id FOREIGN KEY (subject_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);

28
inst/ddl/5.4/pdw/OMOPCDM_pdw_5.4_ddl.sql
View File

@ -63,8 +63,8 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE @cdmDatabaseSchema.VISIT_DETAIL (visi
visit_detail_source_value varchar(50) NULL,
visit_detail_source_concept_id Integer NULL,
admitted_from_concept_id Integer NULL,
admitted_from_source_value Varchar(50) NULL,
discharged_to_source_value Varchar(50) NULL,
admitted_from_source_value varchar(50) NULL,
discharged_to_source_value varchar(50) NULL,
discharged_to_concept_id integer NULL,
preceding_visit_detail_id integer NULL,
parent_visit_detail_id integer NULL,
@ -122,6 +122,8 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENC
procedure_concept_id integer NOT NULL,
procedure_date date NOT NULL,
procedure_datetime datetime NULL,
procedure_end_date date NULL,
procedure_end_datetime datetime NULL,
procedure_type_concept_id integer NOT NULL,
modifier_concept_id integer NULL,
quantity integer NULL,
@ -130,9 +132,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENC
visit_detail_id integer NULL,
procedure_source_value varchar(50) NULL,
procedure_source_concept_id integer NULL,
modifier_source_value varchar(50) NULL,
procedure_status_source_value varchar(50) NULL,
procedure_status_concept_id integer NOT NULL )
modifier_source_value varchar(50) NULL )
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE ON KEY (person_id)
@ -220,8 +220,6 @@ WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE ON KEY (person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE @cdmDatabaseSchema.NOTE (note_id integer NOT NULL,
person_id integer NOT NULL,
note_event_id bigint NULL,
note_event_field_concept_id integer NULL,
note_date date NOT NULL,
note_datetime datetime NULL,
note_type_concept_id integer NOT NULL,
@ -233,7 +231,9 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE @cdmDatabaseSchema.NOTE (note_id inte
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
note_source_value varchar(50) NULL )
note_source_value varchar(50) NULL,
note_event_id bigint NULL,
note_event_field_concept_id integer NULL )
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE ON RANDOM
@ -394,14 +394,14 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE @cdmDatabaseSchema.CONDITION_ERA (con
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE ON KEY (person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE @cdmDatabaseSchema.EPISODE (episode_id integer NOT NULL,
person_id integer NOT NULL,
IF XACT_STATE() = 1 COMMIT; CREATE TABLE @cdmDatabaseSchema.EPISODE (episode_id bigint NOT NULL,
person_id bigint NOT NULL,
episode_concept_id integer NOT NULL,
episode_start_date date NOT NULL,
episode_start_datetime datetime NULL,
episode_end_date date NULL,
episode_end_datetime datetime NULL,
episode_parent_id integer NULL,
episode_parent_id bigint NULL,
episode_number integer NULL,
episode_object_concept_id integer NOT NULL,
episode_type_concept_id integer NOT NULL,
@ -410,8 +410,8 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE @cdmDatabaseSchema.EPISODE (episode_i
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE ON RANDOM
IF XACT_STATE() = 1 COMMIT; CREATE TABLE @cdmDatabaseSchema.EPISODE_EVENT (episode_id integer NOT NULL,
event_id integer NOT NULL,
IF XACT_STATE() = 1 COMMIT; CREATE TABLE @cdmDatabaseSchema.EPISODE_EVENT (episode_id bigint NOT NULL,
event_id bigint NOT NULL,
episode_event_field_concept_id integer NOT NULL )
WITH (DISTRIBUTION = REPLICATE);
@ -457,7 +457,7 @@ WITH (DISTRIBUTION = REPLICATE);
--HINT DISTRIBUTE ON RANDOM
IF XACT_STATE() = 1 COMMIT; CREATE TABLE @cdmDatabaseSchema.VOCABULARY (vocabulary_id varchar(20) NOT NULL,
vocabulary_name varchar(255) NOT NULL,
vocabulary_reference varchar(255) NOT NULL,
vocabulary_reference varchar(255) NULL,
vocabulary_version varchar(255) NULL,
vocabulary_concept_id integer NOT NULL )
WITH (DISTRIBUTION = REPLICATE);

24
inst/ddl/5.4/postgresql/OMOPCDM_postgresql_5.4_constraints.sql
View File

@ -102,6 +102,14 @@ ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_modifier_concept_id FOREIGN KEY (modifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_procedure_source_concept_id FOREIGN KEY (procedure_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_concept_id FOREIGN KEY (device_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -116,6 +124,10 @@ ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSUR
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_source_concept_id FOREIGN KEY (device_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_unit_source_concept_id FOREIGN KEY (unit_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_concept_id FOREIGN KEY (measurement_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -172,8 +184,6 @@ ALTER TABLE @cdmDatabaseSchema.DEATH ADD CONSTRAINT fpk_DEATH_cause_source_conce
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_event_field_concept_id FOREIGN KEY (note_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_type_concept_id FOREIGN KEY (note_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_class_concept_id FOREIGN KEY (note_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -188,6 +198,8 @@ ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_occurrence_id
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_event_field_concept_id FOREIGN KEY (note_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_section_concept_id FOREIGN KEY (section_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_note_nlp_concept_id FOREIGN KEY (note_nlp_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -212,6 +224,8 @@ ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIO
ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.LOCATION ADD CONSTRAINT fpk_LOCATION_country_concept_id FOREIGN KEY (country_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_place_of_service_concept_id FOREIGN KEY (place_of_service_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_location_id FOREIGN KEY (location_id) REFERENCES @cdmDatabaseSchema.LOCATION (LOCATION_ID);
@ -266,6 +280,8 @@ ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_drug_concept
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.EPISODE ADD CONSTRAINT fpk_EPISODE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
@ -288,6 +304,8 @@ ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_metadata_typ
ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CDM_SOURCE ADD CONSTRAINT fpk_CDM_SOURCE_cdm_version_concept_id FOREIGN KEY (cdm_version_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_domain_id FOREIGN KEY (domain_id) REFERENCES @cdmDatabaseSchema.DOMAIN (DOMAIN_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_vocabulary_id FOREIGN KEY (vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
@ -332,6 +350,8 @@ ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_nu
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_denominator_unit_concept_id FOREIGN KEY (denominator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_cohort_definition_id FOREIGN KEY (cohort_definition_id) REFERENCES @cdmDatabaseSchema.COHORT (COHORT_DEFINITION_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_definition_type_concept_id FOREIGN KEY (definition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_subject_concept_id FOREIGN KEY (subject_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);

28
inst/ddl/5.4/postgresql/OMOPCDM_postgresql_5.4_ddl.sql
View File

@ -64,8 +64,8 @@ CREATE TABLE @cdmDatabaseSchema.VISIT_DETAIL (
visit_detail_source_value varchar(50) NULL,
visit_detail_source_concept_id Integer NULL,
admitted_from_concept_id Integer NULL,
admitted_from_source_value Varchar(50) NULL,
discharged_to_source_value Varchar(50) NULL,
admitted_from_source_value varchar(50) NULL,
discharged_to_source_value varchar(50) NULL,
discharged_to_concept_id integer NULL,
preceding_visit_detail_id integer NULL,
parent_visit_detail_id integer NULL,
@ -123,6 +123,8 @@ CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE (
procedure_concept_id integer NOT NULL,
procedure_date date NOT NULL,
procedure_datetime TIMESTAMP NULL,
procedure_end_date date NULL,
procedure_end_datetime TIMESTAMP NULL,
procedure_type_concept_id integer NOT NULL,
modifier_concept_id integer NULL,
quantity integer NULL,
@ -131,9 +133,7 @@ CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE (
visit_detail_id integer NULL,
procedure_source_value varchar(50) NULL,
procedure_source_concept_id integer NULL,
modifier_source_value varchar(50) NULL,
procedure_status_source_value varchar(50) NULL,
procedure_status_concept_id integer NOT NULL );
modifier_source_value varchar(50) NULL );
--HINT DISTRIBUTE ON KEY (person_id)
CREATE TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE (
@ -221,8 +221,6 @@ CREATE TABLE @cdmDatabaseSchema.DEATH (
CREATE TABLE @cdmDatabaseSchema.NOTE (
note_id integer NOT NULL,
person_id integer NOT NULL,
note_event_id bigint NULL,
note_event_field_concept_id integer NULL,
note_date date NOT NULL,
note_datetime TIMESTAMP NULL,
note_type_concept_id integer NOT NULL,
@ -234,7 +232,9 @@ CREATE TABLE @cdmDatabaseSchema.NOTE (
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
note_source_value varchar(50) NULL );
note_source_value varchar(50) NULL,
note_event_id bigint NULL,
note_event_field_concept_id integer NULL );
--HINT DISTRIBUTE ON RANDOM
CREATE TABLE @cdmDatabaseSchema.NOTE_NLP (
@ -395,14 +395,14 @@ CREATE TABLE @cdmDatabaseSchema.CONDITION_ERA (
--HINT DISTRIBUTE ON KEY (person_id)
CREATE TABLE @cdmDatabaseSchema.EPISODE (
episode_id integer NOT NULL,
person_id integer NOT NULL,
episode_id bigint NOT NULL,
person_id bigint NOT NULL,
episode_concept_id integer NOT NULL,
episode_start_date date NOT NULL,
episode_start_datetime TIMESTAMP NULL,
episode_end_date date NULL,
episode_end_datetime TIMESTAMP NULL,
episode_parent_id integer NULL,
episode_parent_id bigint NULL,
episode_number integer NULL,
episode_object_concept_id integer NOT NULL,
episode_type_concept_id integer NOT NULL,
@ -411,8 +411,8 @@ CREATE TABLE @cdmDatabaseSchema.EPISODE (
--HINT DISTRIBUTE ON RANDOM
CREATE TABLE @cdmDatabaseSchema.EPISODE_EVENT (
episode_id integer NOT NULL,
event_id integer NOT NULL,
episode_id bigint NOT NULL,
event_id bigint NOT NULL,
episode_event_field_concept_id integer NOT NULL );
--HINT DISTRIBUTE ON RANDOM
@ -458,7 +458,7 @@ CREATE TABLE @cdmDatabaseSchema.CONCEPT (
CREATE TABLE @cdmDatabaseSchema.VOCABULARY (
vocabulary_id varchar(20) NOT NULL,
vocabulary_name varchar(255) NOT NULL,
vocabulary_reference varchar(255) NOT NULL,
vocabulary_reference varchar(255) NULL,
vocabulary_version varchar(255) NULL,
vocabulary_concept_id integer NOT NULL );

24
inst/ddl/5.4/redshift/OMOPCDM_redshift_5.4_constraints.sql
View File

@ -102,6 +102,14 @@ ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_modifier_concept_id FOREIGN KEY (modifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_procedure_source_concept_id FOREIGN KEY (procedure_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_concept_id FOREIGN KEY (device_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -116,6 +124,10 @@ ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSUR
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_source_concept_id FOREIGN KEY (device_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_unit_source_concept_id FOREIGN KEY (unit_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_concept_id FOREIGN KEY (measurement_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -172,8 +184,6 @@ ALTER TABLE @cdmDatabaseSchema.DEATH ADD CONSTRAINT fpk_DEATH_cause_source_conce
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_event_field_concept_id FOREIGN KEY (note_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_type_concept_id FOREIGN KEY (note_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_class_concept_id FOREIGN KEY (note_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -188,6 +198,8 @@ ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_occurrence_id
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_event_field_concept_id FOREIGN KEY (note_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_section_concept_id FOREIGN KEY (section_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_note_nlp_concept_id FOREIGN KEY (note_nlp_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -212,6 +224,8 @@ ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIO
ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.LOCATION ADD CONSTRAINT fpk_LOCATION_country_concept_id FOREIGN KEY (country_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_place_of_service_concept_id FOREIGN KEY (place_of_service_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_location_id FOREIGN KEY (location_id) REFERENCES @cdmDatabaseSchema.LOCATION (LOCATION_ID);
@ -266,6 +280,8 @@ ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_drug_concept
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.EPISODE ADD CONSTRAINT fpk_EPISODE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
@ -288,6 +304,8 @@ ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_metadata_typ
ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CDM_SOURCE ADD CONSTRAINT fpk_CDM_SOURCE_cdm_version_concept_id FOREIGN KEY (cdm_version_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_domain_id FOREIGN KEY (domain_id) REFERENCES @cdmDatabaseSchema.DOMAIN (DOMAIN_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_vocabulary_id FOREIGN KEY (vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
@ -332,6 +350,8 @@ ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_nu
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_denominator_unit_concept_id FOREIGN KEY (denominator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_cohort_definition_id FOREIGN KEY (cohort_definition_id) REFERENCES @cdmDatabaseSchema.COHORT (COHORT_DEFINITION_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_definition_type_concept_id FOREIGN KEY (definition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_subject_concept_id FOREIGN KEY (subject_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);

28
inst/ddl/5.4/redshift/OMOPCDM_redshift_5.4_ddl.sql
View File

@ -63,8 +63,8 @@ CREATE TABLE @cdmDatabaseSchema.VISIT_DETAIL (visit_detail_id integer NOT NULL,
visit_detail_source_value varchar(50) NULL,
visit_detail_source_concept_id Integer NULL,
admitted_from_concept_id Integer NULL,
admitted_from_source_value Varchar(50) NULL,
discharged_to_source_value Varchar(50) NULL,
admitted_from_source_value varchar(50) NULL,
discharged_to_source_value varchar(50) NULL,
discharged_to_concept_id integer NULL,
preceding_visit_detail_id integer NULL,
parent_visit_detail_id integer NULL,
@ -122,6 +122,8 @@ CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE (procedure_occurrence_id i
procedure_concept_id integer NOT NULL,
procedure_date date NOT NULL,
procedure_datetime TIMESTAMP NULL,
procedure_end_date date NULL,
procedure_end_datetime TIMESTAMP NULL,
procedure_type_concept_id integer NOT NULL,
modifier_concept_id integer NULL,
quantity integer NULL,
@ -130,9 +132,7 @@ CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE (procedure_occurrence_id i
visit_detail_id integer NULL,
procedure_source_value varchar(50) NULL,
procedure_source_concept_id integer NULL,
modifier_source_value varchar(50) NULL,
procedure_status_source_value varchar(50) NULL,
procedure_status_concept_id integer NOT NULL )
modifier_source_value varchar(50) NULL )
DISTKEY(person_id);
--HINT DISTRIBUTE ON KEY (person_id)
@ -220,8 +220,6 @@ DISTKEY(person_id);
--HINT DISTRIBUTE ON KEY (person_id)
CREATE TABLE @cdmDatabaseSchema.NOTE (note_id integer NOT NULL,
person_id integer NOT NULL,
note_event_id bigint NULL,
note_event_field_concept_id integer NULL,
note_date date NOT NULL,
note_datetime TIMESTAMP NULL,
note_type_concept_id integer NOT NULL,
@ -233,7 +231,9 @@ CREATE TABLE @cdmDatabaseSchema.NOTE (note_id integer NOT NULL,
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
note_source_value varchar(50) NULL )
note_source_value varchar(50) NULL,
note_event_id bigint NULL,
note_event_field_concept_id integer NULL )
DISTKEY(person_id);
--HINT DISTRIBUTE ON RANDOM
@ -394,14 +394,14 @@ CREATE TABLE @cdmDatabaseSchema.CONDITION_ERA (condition_era_id integer NOT NUL
DISTKEY(person_id);
--HINT DISTRIBUTE ON KEY (person_id)
CREATE TABLE @cdmDatabaseSchema.EPISODE (episode_id integer NOT NULL,
person_id integer NOT NULL,
CREATE TABLE @cdmDatabaseSchema.EPISODE (episode_id bigint NOT NULL,
person_id bigint NOT NULL,
episode_concept_id integer NOT NULL,
episode_start_date date NOT NULL,
episode_start_datetime TIMESTAMP NULL,
episode_end_date date NULL,
episode_end_datetime TIMESTAMP NULL,
episode_parent_id integer NULL,
episode_parent_id bigint NULL,
episode_number integer NULL,
episode_object_concept_id integer NOT NULL,
episode_type_concept_id integer NOT NULL,
@ -410,8 +410,8 @@ CREATE TABLE @cdmDatabaseSchema.EPISODE (episode_id integer NOT NULL,
DISTKEY(person_id);
--HINT DISTRIBUTE ON RANDOM
CREATE TABLE @cdmDatabaseSchema.EPISODE_EVENT (episode_id integer NOT NULL,
event_id integer NOT NULL,
CREATE TABLE @cdmDatabaseSchema.EPISODE_EVENT (episode_id bigint NOT NULL,
event_id bigint NOT NULL,
episode_event_field_concept_id integer NOT NULL )
DISTSTYLE ALL;
@ -457,7 +457,7 @@ DISTSTYLE ALL;
--HINT DISTRIBUTE ON RANDOM
CREATE TABLE @cdmDatabaseSchema.VOCABULARY (vocabulary_id varchar(20) NOT NULL,
vocabulary_name varchar(255) NOT NULL,
vocabulary_reference varchar(255) NOT NULL,
vocabulary_reference varchar(255) NULL,
vocabulary_version varchar(255) NULL,
vocabulary_concept_id integer NOT NULL )
DISTSTYLE ALL;

24
inst/ddl/5.4/sql_server/OMOPCDM_sql_server_5.4_constraints.sql
View File

@ -102,6 +102,14 @@ ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_modifier_concept_id FOREIGN KEY (modifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_procedure_source_concept_id FOREIGN KEY (procedure_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_concept_id FOREIGN KEY (device_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -116,6 +124,10 @@ ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSUR
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_source_concept_id FOREIGN KEY (device_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_unit_source_concept_id FOREIGN KEY (unit_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_concept_id FOREIGN KEY (measurement_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -172,8 +184,6 @@ ALTER TABLE @cdmDatabaseSchema.DEATH ADD CONSTRAINT fpk_DEATH_cause_source_conce
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_event_field_concept_id FOREIGN KEY (note_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_type_concept_id FOREIGN KEY (note_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_class_concept_id FOREIGN KEY (note_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -188,6 +198,8 @@ ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_occurrence_id
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_event_field_concept_id FOREIGN KEY (note_event_field_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_section_concept_id FOREIGN KEY (section_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_note_nlp_concept_id FOREIGN KEY (note_nlp_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
@ -212,6 +224,8 @@ ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIO
ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.LOCATION ADD CONSTRAINT fpk_LOCATION_country_concept_id FOREIGN KEY (country_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_place_of_service_concept_id FOREIGN KEY (place_of_service_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_location_id FOREIGN KEY (location_id) REFERENCES @cdmDatabaseSchema.LOCATION (LOCATION_ID);
@ -266,6 +280,8 @@ ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_drug_concept
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.EPISODE ADD CONSTRAINT fpk_EPISODE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
@ -288,6 +304,8 @@ ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_metadata_typ
ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CDM_SOURCE ADD CONSTRAINT fpk_CDM_SOURCE_cdm_version_concept_id FOREIGN KEY (cdm_version_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_domain_id FOREIGN KEY (domain_id) REFERENCES @cdmDatabaseSchema.DOMAIN (DOMAIN_ID);
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_vocabulary_id FOREIGN KEY (vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
@ -332,6 +350,8 @@ ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_nu
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_denominator_unit_concept_id FOREIGN KEY (denominator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_cohort_definition_id FOREIGN KEY (cohort_definition_id) REFERENCES @cdmDatabaseSchema.COHORT (COHORT_DEFINITION_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_definition_type_concept_id FOREIGN KEY (definition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_subject_concept_id FOREIGN KEY (subject_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);

28
inst/ddl/5.4/sql_server/OMOPCDM_sql_server_5.4_ddl.sql
View File

@ -64,8 +64,8 @@ CREATE TABLE @cdmDatabaseSchema.VISIT_DETAIL (
visit_detail_source_value varchar(50) NULL,
visit_detail_source_concept_id Integer NULL,
admitted_from_concept_id Integer NULL,
admitted_from_source_value Varchar(50) NULL,
discharged_to_source_value Varchar(50) NULL,
admitted_from_source_value varchar(50) NULL,
discharged_to_source_value varchar(50) NULL,
discharged_to_concept_id integer NULL,
preceding_visit_detail_id integer NULL,
parent_visit_detail_id integer NULL,
@ -123,6 +123,8 @@ CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE (
procedure_concept_id integer NOT NULL,
procedure_date date NOT NULL,
procedure_datetime datetime NULL,
procedure_end_date date NULL,
procedure_end_datetime datetime NULL,
procedure_type_concept_id integer NOT NULL,
modifier_concept_id integer NULL,
quantity integer NULL,
@ -131,9 +133,7 @@ CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE (
visit_detail_id integer NULL,
procedure_source_value varchar(50) NULL,
procedure_source_concept_id integer NULL,
modifier_source_value varchar(50) NULL,
procedure_status_source_value varchar(50) NULL,
procedure_status_concept_id integer NOT NULL );
modifier_source_value varchar(50) NULL );
--HINT DISTRIBUTE ON KEY (person_id)
CREATE TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE (
@ -221,8 +221,6 @@ CREATE TABLE @cdmDatabaseSchema.DEATH (
CREATE TABLE @cdmDatabaseSchema.NOTE (
note_id integer NOT NULL,
person_id integer NOT NULL,
note_event_id bigint NULL,
note_event_field_concept_id integer NULL,
note_date date NOT NULL,
note_datetime datetime NULL,
note_type_concept_id integer NOT NULL,
@ -234,7 +232,9 @@ CREATE TABLE @cdmDatabaseSchema.NOTE (
provider_id integer NULL,
visit_occurrence_id integer NULL,
visit_detail_id integer NULL,
note_source_value varchar(50) NULL );
note_source_value varchar(50) NULL,
note_event_id bigint NULL,
note_event_field_concept_id integer NULL );
--HINT DISTRIBUTE ON RANDOM
CREATE TABLE @cdmDatabaseSchema.NOTE_NLP (
@ -395,14 +395,14 @@ CREATE TABLE @cdmDatabaseSchema.CONDITION_ERA (
--HINT DISTRIBUTE ON KEY (person_id)
CREATE TABLE @cdmDatabaseSchema.EPISODE (
episode_id integer NOT NULL,
person_id integer NOT NULL,
episode_id bigint NOT NULL,
person_id bigint NOT NULL,
episode_concept_id integer NOT NULL,
episode_start_date date NOT NULL,
episode_start_datetime datetime NULL,
episode_end_date date NULL,
episode_end_datetime datetime NULL,
episode_parent_id integer NULL,
episode_parent_id bigint NULL,
episode_number integer NULL,
episode_object_concept_id integer NOT NULL,
episode_type_concept_id integer NOT NULL,
@ -411,8 +411,8 @@ CREATE TABLE @cdmDatabaseSchema.EPISODE (
--HINT DISTRIBUTE ON RANDOM
CREATE TABLE @cdmDatabaseSchema.EPISODE_EVENT (
episode_id integer NOT NULL,
event_id integer NOT NULL,
episode_id bigint NOT NULL,
event_id bigint NOT NULL,
episode_event_field_concept_id integer NOT NULL );
--HINT DISTRIBUTE ON RANDOM
@ -458,7 +458,7 @@ CREATE TABLE @cdmDatabaseSchema.CONCEPT (
CREATE TABLE @cdmDatabaseSchema.VOCABULARY (
vocabulary_id varchar(20) NOT NULL,
vocabulary_name varchar(255) NOT NULL,
vocabulary_reference varchar(255) NOT NULL,
vocabulary_reference varchar(255) NULL,
vocabulary_version varchar(255) NULL,
vocabulary_concept_id integer NOT NULL );