mz-health/OMOP
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OMOP
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Added v5.2 updates to redshift ddl

This commit is contained in:
clairblacketer 2017-07-27 14:24:04 -04:00
parent 1dd281c329
commit 8dbead2f35
2 changed files with 44 additions and 14 deletions
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56
Redshift/OMOP CDM ddl - Redshift.sql
View File

@ -17,16 +17,16 @@
/************************ /************************
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script to create OMOP common data model, version 5.1.0 for Amazon Redshift database script to create OMOP common data model, version 5.2.0 for Amazon Redshift database
last revised: 20-July-2017 last revised: 20-July-2017
@ -309,7 +309,12 @@ create table visit_occurrence
provider_id integer null, provider_id integer null,
care_site_id integer null, care_site_id integer null,
visit_source_value varchar(50) null, visit_source_value varchar(50) null,
visit_source_concept_id integer null visit_source_concept_id integer null,
admitting_source_concept_id integer null,
admitting_source_value varchar(50) null,
discharge_to_concept_id integer null,
discharge_to_source_value varchar(50) null,
preceding_visit_occurrence_id integer null
) )
distkey(payer_plan_period_id) distkey(payer_plan_period_id)
sortkey(payer_plan_period_id); sortkey(payer_plan_period_id);
@ -347,6 +352,7 @@ create table drug_exposure
drug_exposure_start_datetime timestamp not null , drug_exposure_start_datetime timestamp not null ,
drug_exposure_end_date date null , drug_exposure_end_date date null ,
drug_exposure_end_datetime timestamp null , drug_exposure_end_datetime timestamp null ,
verbatim_end_date date null,
drug_type_concept_id integer not null , drug_type_concept_id integer not null ,
stop_reason varchar(20) null , stop_reason varchar(20) null ,
refills integer null , refills integer null ,
@ -354,8 +360,6 @@ create table drug_exposure
days_supply integer null , days_supply integer null ,
sig varchar(8000) null , sig varchar(8000) null ,
route_concept_id integer null , route_concept_id integer null ,
effective_drug_dose float null ,
dose_unit_concept_id integer null ,
lot_number varchar(50) null , lot_number varchar(50) null ,
provider_id integer null , provider_id integer null ,
visit_occurrence_id integer null , visit_occurrence_id integer null ,
@ -403,7 +407,9 @@ create table condition_occurrence
provider_id integer null , provider_id integer null ,
visit_occurrence_id integer null , visit_occurrence_id integer null ,
condition_source_value varchar(50) null , condition_source_value varchar(50) null ,
condition_source_concept_id integer null condition_source_concept_id integer null ,
condition_status_source_value varchar(50) null ,
condition_status_concept_id integer null
) )
distkey(person_id) distkey(person_id)
interleaved sortkey(person_id, condition_concept_id, condition_start_date, condition_end_date); interleaved sortkey(person_id, condition_concept_id, condition_start_date, condition_end_date);
@ -454,6 +460,28 @@ sortkey(person_id);
/*This table is new in CDM v5.2*/
CREATE TABLE note_nlp
(
note_nlp_id bigint not null ,
note_id integer not null ,
section_concept_id integer null ,
snippet varchar(250) null ,
offset varchar(250) null ,
lexical_variant varchar(250) not null ,
note_nlp_concept_id integer null ,
note_nlp_source_concept_id integer null ,
nlp_system varchar(250) null ,
nlp_date date not null ,
nlp_datetime timestamp null ,
term_exists varchar(1) null ,
term_temporal varchar(50) null ,
term_modifiers varchar(2000) null
)
distkey(note_id)
sortkey(note_id);
create table observation create table observation
( (
observation_id integer not null , observation_id integer not null ,
@ -675,7 +703,9 @@ create table cost
payer_plan_period_id integer null , payer_plan_period_id integer null ,
amount_allowed float null , amount_allowed float null ,
revenue_code_concept_id integer null , revenue_code_concept_id integer null ,
reveue_code_source_value varchar(50) null reveue_code_source_value varchar(50) null ,
drg_concept_id integer null,
drg_source_value varchar(3) null
) )
distkey(payer_plan_period_id) distkey(payer_plan_period_id)
sortkey(payer_plan_period_id); sortkey(payer_plan_period_id);

2
Sql Server/OMOP CDM ddl - SQL Server.sql
View File

@ -315,7 +315,7 @@ CREATE TABLE visit_occurrence
visit_source_concept_id INTEGER NULL visit_source_concept_id INTEGER NULL
admitting_source_concept_id INTEGER NULL , admitting_source_concept_id INTEGER NULL ,
admitting_source_value VARCHAR(50) NULL , admitting_source_value VARCHAR(50) NULL ,
discharge_to_concept_id INTEGER(50) NULL , discharge_to_concept_id INTEGER NULL ,
discharge_to_source_value VARCHAR(50) NULL , discharge_to_source_value VARCHAR(50) NULL ,
preceding_visit_occurrence_id INTEGER NULL preceding_visit_occurrence_id INTEGER NULL
) )