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OMOP
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closes #666

This commit is contained in:
Clair Blacketer 2024-04-24 17:11:38 -04:00
parent 4869f7c4ca
commit 8ee8a7b2f6
2 changed files with 3 additions and 3 deletions
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2
inst/csv/OMOP_CDMv5.3_Field_Level.csv
View File

@ -279,7 +279,7 @@ payer_plan_period,payer_plan_period_id,Yes,integer,"A unique identifier for each
payer_plan_period,person_id,Yes,integer,The Person covered by the Plan.,"A single Person can have multiple, overlapping, PAYER_PLAN_PERIOD records",No,Yes,PERSON,PERSON_ID,NA,NA,NA payer_plan_period,person_id,Yes,integer,The Person covered by the Plan.,"A single Person can have multiple, overlapping, PAYER_PLAN_PERIOD records",No,Yes,PERSON,PERSON_ID,NA,NA,NA
payer_plan_period,payer_plan_period_start_date,Yes,date,Start date of Plan coverage.,NA,No,No,NA,NA,NA,NA,NA payer_plan_period,payer_plan_period_start_date,Yes,date,Start date of Plan coverage.,NA,No,No,NA,NA,NA,NA,NA
payer_plan_period,payer_plan_period_end_date,Yes,date,End date of Plan coverage.,NA,No,No,NA,NA,NA,NA,NA payer_plan_period,payer_plan_period_end_date,Yes,date,End date of Plan coverage.,NA,No,No,NA,NA,NA,NA,NA
payer_plan_period,payer_concept_id,No,integer,This field represents the organization who reimburses the provider which administers care to the Person.,"Map the Payer directly to a standard CONCEPT_ID. If one does not exists please contact the vocabulary team. There is no global controlled vocabulary available for this information. The point is to stratify on this information and identify if Persons have the same payer, though the name of the Payer is not necessary. [Accepted Concepts](http://athena.ohdsi.org/search-terms/terms?domain=Payer&standardConcept=Standard&page=1&pageSize=15&query=).",No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,payer_concept_id,No,integer,This field represents the organization who reimburses the provider which administers care to the Person.,"Map the payer directly to a standard CONCEPT_ID with the domain_id of 'Payer' ([Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Payer&standardConcept=Standard&page=1&pageSize=15&query=)). This vocabulary is not exhaustive so if there is a value missing, please see the [custom concepts](https://ohdsi.github.io/CommonDataModel/customConcepts.html) page.",No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA
payer_plan_period,payer_source_value,No,varchar(50),This is the Payer as it appears in the source data.,NA,No,No,NA,NA,NA,NA,NA payer_plan_period,payer_source_value,No,varchar(50),This is the Payer as it appears in the source data.,NA,No,No,NA,NA,NA,NA,NA
payer_plan_period,payer_source_concept_id,No,integer,NA,If the source data codes the Payer in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,payer_source_concept_id,No,integer,NA,If the source data codes the Payer in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA
payer_plan_period,plan_concept_id,No,integer,This field represents the specific health benefit Plan the Person is enrolled in.,"Map the Plan directly to a standard CONCEPT_ID in the 'Plan' vocabulary ([Accepted Concepts](http://athena.ohdsi.org/search-terms/terms?domain=Plan&standardConcept=Standard&page=1&pageSize=15&query=)). This vocabulary is not exhaustive so if there is a value missing, please see the [custom concepts](https://ohdsi.github.io/CommonDataModel/customConcepts.html) page.",No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,plan_concept_id,No,integer,This field represents the specific health benefit Plan the Person is enrolled in.,"Map the Plan directly to a standard CONCEPT_ID in the 'Plan' vocabulary ([Accepted Concepts](http://athena.ohdsi.org/search-terms/terms?domain=Plan&standardConcept=Standard&page=1&pageSize=15&query=)). This vocabulary is not exhaustive so if there is a value missing, please see the [custom concepts](https://ohdsi.github.io/CommonDataModel/customConcepts.html) page.",No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA

1 cdmTableName cdmFieldName isRequired cdmDatatype userGuidance etlConventions isPrimaryKey isForeignKey fkTableName fkFieldName fkDomain fkClass unique DQ identifiers
279 cost paid_by_primary No float NA NA No No NA NA NA NA NA
280 cost paid_ingredient_cost No float NA NA No No NA NA NA NA NA
281 cost paid_dispensing_fee No float NA NA No No NA NA NA NA NA
282 cost payer_plan_period_id No integer NA NA No No NA NA NA NA NA
283 cost amount_allowed No float NA NA No No NA NA NA NA NA
284 cost revenue_code_concept_id No integer NA NA No Yes CONCEPT CONCEPT_ID NA NA NA
285 cost revenue_code_source_value No varchar(50) Revenue codes are a method to charge for a class of procedures and conditions in the U.S. hospital system. NA No No NA NA NA NA NA

4
inst/csv/OMOP_CDMv5.4_Field_Level.csv
View File

@ -297,10 +297,10 @@ payer_plan_period,payer_plan_period_id,Yes,integer,"A unique identifier for each
payer_plan_period,person_id,Yes,integer,The Person covered by the Plan.,"A single Person can have multiple, overlapping, PAYER_PLAN_PERIOD records",No,Yes,PERSON,PERSON_ID,NA,NA,NA payer_plan_period,person_id,Yes,integer,The Person covered by the Plan.,"A single Person can have multiple, overlapping, PAYER_PLAN_PERIOD records",No,Yes,PERSON,PERSON_ID,NA,NA,NA
payer_plan_period,payer_plan_period_start_date,Yes,date,Start date of Plan coverage.,NA,No,No,NA,NA,NA,NA,NA payer_plan_period,payer_plan_period_start_date,Yes,date,Start date of Plan coverage.,NA,No,No,NA,NA,NA,NA,NA
payer_plan_period,payer_plan_period_end_date,Yes,date,End date of Plan coverage.,NA,No,No,NA,NA,NA,NA,NA payer_plan_period,payer_plan_period_end_date,Yes,date,End date of Plan coverage.,NA,No,No,NA,NA,NA,NA,NA
payer_plan_period,payer_concept_id,No,integer,This field represents the organization who reimburses the provider which administers care to the Person.,"Map the Plan directly to a standard CONCEPT_ID in the 'Plan' vocabulary ([Accepted Concepts](http://athena.ohdsi.org/search-terms/terms?domain=Plan&standardConcept=Standard&page=1&pageSize=15&query=)). This vocabulary is not exhaustive so if there is a value missing, please see the [custom concepts](https://ohdsi.github.io/CommonDataModel/customConcepts.html) page.",No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,payer_concept_id,No,integer,This field represents the organization who reimburses the provider which administers care to the Person.,"Map the payer directly to a standard CONCEPT_ID with the domain_id of 'Payer' ([Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Payer&standardConcept=Standard&page=1&pageSize=15&query=)). This vocabulary is not exhaustive so if there is a value missing, please see the [custom concepts](https://ohdsi.github.io/CommonDataModel/customConcepts.html) page.",No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA
payer_plan_period,payer_source_value,No,varchar(50),This is the Payer as it appears in the source data.,NA,No,No,NA,NA,NA,NA,NA payer_plan_period,payer_source_value,No,varchar(50),This is the Payer as it appears in the source data.,NA,No,No,NA,NA,NA,NA,NA
payer_plan_period,payer_source_concept_id,No,integer,NA,If the source data codes the Payer in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,payer_source_concept_id,No,integer,NA,If the source data codes the Payer in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA
payer_plan_period,plan_concept_id,No,integer,This field represents the specific health benefit Plan the Person is enrolled in.,Map the Plan directly to a standard CONCEPT_ID. If one does not exists please contact the vocabulary team. There is no global controlled vocabulary available for this information. The point is to stratify on this information and identify if Persons have the same health benefit Plan though the name of the Plan is not necessary. [Accepted Concepts](http://athena.ohdsi.org/search-terms/terms?domain=Plan&standardConcept=Standard&page=1&pageSize=15&query=).,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,plan_concept_id,No,integer,This field represents the specific health benefit Plan the Person is enrolled in.,"Map the Plan directly to a standard CONCEPT_ID in the 'Plan' vocabulary ([Accepted Concepts](http://athena.ohdsi.org/search-terms/terms?domain=Plan&standardConcept=Standard&page=1&pageSize=15&query=)). This vocabulary is not exhaustive so if there is a value missing, please see the [custom concepts](https://ohdsi.github.io/CommonDataModel/customConcepts.html) page.",No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA
payer_plan_period,plan_source_value,No,varchar(50),This is the health benefit Plan of the Person as it appears in the source data.,NA,No,No,NA,NA,NA,NA,NA payer_plan_period,plan_source_value,No,varchar(50),This is the health benefit Plan of the Person as it appears in the source data.,NA,No,No,NA,NA,NA,NA,NA
payer_plan_period,plan_source_concept_id,No,integer,NA,If the source data codes the Plan in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,plan_source_concept_id,No,integer,NA,If the source data codes the Plan in an OMOP supported vocabulary store the concept_id here.,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA
payer_plan_period,sponsor_concept_id,No,integer,"This field represents the sponsor of the Plan who finances the Plan. This includes self-insured, small group health plan and large group health plan.",Map the sponsor directly to a standard CONCEPT_ID. If one does not exists please contact the vocabulary team. There is no global controlled vocabulary available for this information. The point is to stratify on this information and identify if Persons have the same sponsor though the name of the sponsor is not necessary. [Accepted Concepts](http://athena.ohdsi.org/search-terms/terms?domain=Sponsor&standardConcept=Standard&page=1&pageSize=15&query=).,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA payer_plan_period,sponsor_concept_id,No,integer,"This field represents the sponsor of the Plan who finances the Plan. This includes self-insured, small group health plan and large group health plan.",Map the sponsor directly to a standard CONCEPT_ID. If one does not exists please contact the vocabulary team. There is no global controlled vocabulary available for this information. The point is to stratify on this information and identify if Persons have the same sponsor though the name of the sponsor is not necessary. [Accepted Concepts](http://athena.ohdsi.org/search-terms/terms?domain=Sponsor&standardConcept=Standard&page=1&pageSize=15&query=).,No,Yes,CONCEPT,CONCEPT_ID,NA,NA,NA

1 cdmTableName cdmFieldName isRequired cdmDatatype userGuidance etlConventions isPrimaryKey isForeignKey fkTableName fkFieldName fkDomain fkClass unique DQ identifiers
297 cost paid_by_primary No float NA NA No No NA NA NA NA NA
298 cost paid_ingredient_cost No float NA NA No No NA NA NA NA NA
299 cost paid_dispensing_fee No float NA NA No No NA NA NA NA NA
300 cost payer_plan_period_id No integer NA NA No No NA NA NA NA NA
301 cost amount_allowed No float NA NA No No NA NA NA NA NA
302 cost revenue_code_concept_id No integer NA NA No Yes CONCEPT CONCEPT_ID NA NA NA
303 cost revenue_code_source_value No varchar(50) Revenue codes are a method to charge for a class of procedures and conditions in the U.S. hospital system. NA No No NA NA NA NA NA
304 cost drg_concept_id No integer NA NA No Yes CONCEPT CONCEPT_ID NA NA NA
305 cost drg_source_value No varchar(3) Diagnosis Related Groups are US codes used to classify hospital cases into one of approximately 500 groups. NA No No NA NA NA NA NA
306 drug_era drug_era_id Yes integer NA NA Yes No NA NA NA NA NA