mz-health/OMOP
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OMOP
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Merge branch 'v5.4' into v5.4_cleanup

This commit is contained in:
Frank DeFalco 2021-08-18 16:06:08 -04:00
parent a4bfeccf83 5dd9850088
commit 918b57bcca
3 changed files with 22 additions and 2 deletions
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18
inst/csv/OMOP_CDMv5.3_Field_Level.csv
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@ -498,6 +498,7 @@ DRUG_STRENGTH,denominator_unit_concept_id,No,integer,The Concept representing th
DRUG_STRENGTH,box_size,No,integer,The number of units of Clinical Branded Drug or Quantified Clinical or Branded Drug contained in a box as dispensed to the patient.,,No,No,,,,,
DRUG_STRENGTH,valid_start_date,Yes,date,"The date when the Concept was first
recorded. The default value is
<<<<<<< HEAD:inst/csv/OMOP_CDMv5.3_Field_Level.csv
1-Jan-1970.",,No,No,,,,,
DRUG_STRENGTH,valid_end_date,Yes,date,The date when then Concept became invalid.,,No,No,,,,,
DRUG_STRENGTH,invalid_reason,No,varchar(1),"Reason the concept was invalidated. Possible values are D (deleted), U (replaced with an update) or NULL when valid_end_date has the default value.",,No,No,,,,,
@ -513,3 +514,20 @@ ATTRIBUTE_DEFINITION,attribute_name,Yes,varchar(255),,,No,No,,,,,
ATTRIBUTE_DEFINITION,attribute_description,No,varchar(MAX),,,No,No,,,,,
ATTRIBUTE_DEFINITION,attribute_type_concept_id,Yes,integer,,,No,Yes,CONCEPT,CONCEPT_ID,,,
ATTRIBUTE_DEFINITION,attribute_syntax,No,varchar(MAX),,,No,No,,,,,
=======
1-Jan-1970.",,No,No,,,,,
DRUG_STRENGTH,valid_end_date,Yes,date,The date when then Concept became invalid.,,No,No,,,,,
DRUG_STRENGTH,invalid_reason,No,varchar(1),"Reason the concept was invalidated. Possible values are D (deleted), U (replaced with an update) or NULL when valid_end_date has the default value.",,No,No,,,,,
COHORT_DEFINITION,cohort_definition_id,Yes,integer,"This is the identifier given to the cohort, usually by the ATLAS application",,No,No,,,,,
COHORT_DEFINITION,cohort_definition_name,Yes,varchar(255),A short description of the cohort,,No,No,,,,,
COHORT_DEFINITION,cohort_definition_description,No,varchar(MAX),A complete description of the cohort.,,No,No,,,,,
COHORT_DEFINITION,definition_type_concept_id,Yes,integer,Type defining what kind of Cohort Definition the record represents and how the syntax may be executed.,,No,Yes,CONCEPT,CONCEPT_ID,,,
COHORT_DEFINITION,cohort_definition_syntax,No,varchar(MAX),Syntax or code to operationalize the Cohort Definition.,,No,No,,,,,
COHORT_DEFINITION,subject_concept_id,Yes,integer,"This field contains a Concept that represents the domain of the subjects that are members of the cohort (e.g., Person, Provider, Visit).",,No,Yes,CONCEPT,CONCEPT_ID,,,
COHORT_DEFINITION,cohort_initiation_date,No,date,A date to indicate when the Cohort was initiated in the COHORT table.,,No,No,,,,,
ATTRIBUTE_DEFINITION,attribute_definition_id,Yes,integer,,,No,No,,,,,
ATTRIBUTE_DEFINITION,attribute_name,Yes,varchar(255),,,No,No,,,,,
ATTRIBUTE_DEFINITION,attribute_description,No,varchar(MAX),,,No,No,,,,,
ATTRIBUTE_DEFINITION,attribute_type_concept_id,Yes,integer,,,No,Yes,CONCEPT,CONCEPT_ID,,,
ATTRIBUTE_DEFINITION,attribute_syntax,No,varchar(MAX),,,No,No,,,,,
>>>>>>> v5.4:inst/csv/OMOP_CDMv5.3.1_Field_Level.csv

Can't render this file because it has a wrong number of fields in line 517.

2
rmd/_site.yml
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@ -29,6 +29,8 @@ navbar:
href: cdm30.html
- text: "CDM v5.3.1"
href: cdm531.html
- text: "CDM v5.4"
href: cdm531.html
- text: "CDM v6.0"
href: cdm60.html
- text: "Proposals"