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Closes #150

This commit is contained in:
Clair Blacketer 2018-02-07 08:54:35 -05:00
parent ced0af0fe9
commit 9431a2cd30
8 changed files with 54 additions and 60 deletions
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3
BigQuery/OMOP CDM bigquery ddl.txt
View File

@ -391,7 +391,6 @@ create table measurement
measurement_concept_id integer not null ,
measurement_date date not null ,
measurement_time varchar(10) null ,
measurement_datetime datetime null ,
measurement_type_concept_id integer not null ,
operator_concept_id integer null ,
value_as_number float null ,
@ -551,7 +550,7 @@ create table payer_plan_period
sponsor_source_concept_id integer null ,
family_source_value varchar(50) null ,
stop_reason_concept_id integer null ,
stop_reason_source_value integer null ,
stop_reason_source_value varchar(50) null ,
stop_reason_source_concept_id integer null
)
;

4
Impala/OMOP CDM impala ddl.txt
View File

@ -816,7 +816,7 @@ CREATE TABLE measurement
measurement_date TIMESTAMP,
measurement_datetime TIMESTAMP,
measurement_time VARCHAR(10),
measurement_type_concept_id INTEGER,
@ -1134,7 +1134,7 @@ CREATE TABLE payer_plan_period
stop_reason_concept_id INTEGER,
stop_reason_source_value INTEGER,
stop_reason_source_value VARCHAR(50),
stop_reason_source_concept_id INTEGER
)

6
Netezza/OMOP CDM netezza ddl.txt
View File

@ -28,7 +28,7 @@
netezza script to create OMOP common data model version 5.3
last revised: 6-Nov-2017
last revised: 8-Jan-2018
Authors: Patrick Ryan, Christian Reich, Clair Blacketer
@ -479,7 +479,7 @@ CREATE TABLE measurement
person_id INTEGER NOT NULL ,
measurement_concept_id INTEGER NOT NULL ,
measurement_date DATE NOT NULL ,
measurement_datetime DATETIME NULL ,
measurement_time VARCHAR(10) NULL ,
measurement_type_concept_id INTEGER NOT NULL ,
operator_concept_id INTEGER NULL ,
value_as_number REAL NULL ,
@ -665,7 +665,7 @@ CREATE TABLE payer_plan_period
sponsor_source_concept_id INTEGER NULL ,
family_source_value VARCHAR(50) NULL ,
stop_reason_concept_id INTEGER NULL ,
stop_reason_source_value INTEGER NULL ,
stop_reason_source_value VARCHAR(50) NULL ,
stop_reason_source_concept_id INTEGER NULL
)
DISTRIBUTE ON (person_id)

5
Oracle/OMOP CDM oracle ddl.txt
View File

@ -447,8 +447,7 @@ CREATE TABLE measurement
person_id INTEGER NOT NULL ,
measurement_concept_id INTEGER NOT NULL ,
measurement_date DATE NOT NULL ,
measurement_time VARCHAR(10) NULL ,
measurement_datetime TIMESTAMP NULL ,
measurement_time VARCHAR(10) NULL ,
measurement_type_concept_id INTEGER NOT NULL ,
operator_concept_id INTEGER NULL ,
value_as_number FLOAT NULL ,
@ -623,7 +622,7 @@ CREATE TABLE payer_plan_period
sponsor_source_concept_id INTEGER NULL ,
family_source_value VARCHAR(50) NULL ,
stop_reason_concept_id INTEGER NULL ,
stop_reason_source_value INTEGER NULL ,
stop_reason_source_value VARCHAR(50) NULL ,
stop_reason_source_concept_id INTEGER NULL
)
;

43
ParallelDataWarehouse/OMOP CDM pdw ddl.txt
View File

@ -207,7 +207,7 @@ Standardized clinical data
************************/
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE person
(person_id INTEGER NOT NULL ,
gender_concept_id INTEGER NOT NULL ,
@ -231,7 +231,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE person
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE observation_period
(observation_period_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -242,7 +242,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE observation_period
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE specimen
(specimen_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -263,7 +263,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE specimen
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE death
(person_id INTEGER NOT NULL ,
death_date DATE NOT NULL ,
@ -276,7 +276,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE death
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE visit_occurrence
(visit_occurrence_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -299,7 +299,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE visit_occurrence
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE visit_detail
(visit_detail_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -324,7 +324,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE visit_detail
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE procedure_occurrence
(procedure_occurrence_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -344,7 +344,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE procedure_occurrence
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE drug_exposure
(drug_exposure_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -373,7 +373,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE drug_exposure
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE device_exposure
(device_exposure_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -394,7 +394,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE device_exposure
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE condition_occurrence
(condition_occurrence_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -416,14 +416,13 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE condition_occurrence
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE measurement
(measurement_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
measurement_concept_id INTEGER NOT NULL ,
measurement_date DATE NOT NULL ,
measurement_time VARCHAR(10) NULL ,
measurement_datetime DATETIME NULL ,
measurement_time VARCHAR(10) NULL ,
measurement_type_concept_id INTEGER NOT NULL ,
operator_concept_id INTEGER NULL ,
value_as_number FLOAT NULL ,
@ -442,7 +441,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE measurement
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE note
(note_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -482,7 +481,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE note_nlp
WITH (DISTRIBUTION = REPLICATE);
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE observation
(observation_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -573,7 +572,7 @@ Standardized health economics
************************/
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE payer_plan_period
(payer_plan_period_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -590,7 +589,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE payer_plan_period
sponsor_source_concept_id INTEGER NULL ,
family_source_value VARCHAR(50) NULL ,
stop_reason_concept_id INTEGER NULL ,
stop_reason_source_value INTEGER NULL ,
stop_reason_source_value VARCHAR(50) NULL ,
stop_reason_source_concept_id INTEGER NULL
)
WITH (DISTRIBUTION = HASH(person_id));
@ -630,7 +629,7 @@ Standardized derived elements
************************/
--HINT DISTRIBUTE_ON_KEY(subject_id)
--HINT DISTRIBUTE_ON_KEY(subject_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE cohort
(cohort_definition_id INTEGER NOT NULL ,
subject_id INTEGER NOT NULL ,
@ -640,7 +639,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE cohort
WITH (DISTRIBUTION = HASH(subject_id));
--HINT DISTRIBUTE_ON_KEY(subject_id)
--HINT DISTRIBUTE_ON_KEY(subject_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE cohort_attribute
(cohort_definition_id INTEGER NOT NULL ,
subject_id INTEGER NOT NULL ,
@ -653,7 +652,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE cohort_attribute
WITH (DISTRIBUTION = HASH(subject_id));
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE drug_era
(drug_era_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -666,7 +665,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE drug_era
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE dose_era
(dose_era_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -679,7 +678,7 @@ IF XACT_STATE() = 1 COMMIT; CREATE TABLE dose_era
WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE condition_era
(condition_era_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,

5
PostgreSQL/OMOP CDM postgresql ddl.txt
View File

@ -447,8 +447,7 @@ CREATE TABLE measurement
person_id INTEGER NOT NULL ,
measurement_concept_id INTEGER NOT NULL ,
measurement_date DATE NOT NULL ,
measurement_time VARCHAR(10) NULL ,
measurement_datetime TIMESTAMP NULL ,
measurement_time VARCHAR(10) NULL ,
measurement_type_concept_id INTEGER NOT NULL ,
operator_concept_id INTEGER NULL ,
value_as_number NUMERIC NULL ,
@ -623,7 +622,7 @@ CREATE TABLE payer_plan_period
sponsor_source_concept_id INTEGER NULL ,
family_source_value VARCHAR(50) NULL ,
stop_reason_concept_id INTEGER NULL ,
stop_reason_source_value INTEGER NULL ,
stop_reason_source_value VARCHAR(50) NULL ,
stop_reason_source_concept_id INTEGER NULL
)
;

43
Redshift/OMOP CDM redshift ddl.txt
View File

@ -207,7 +207,7 @@ Standardized clinical data
************************/
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE person
(person_id INTEGER NOT NULL ,
gender_concept_id INTEGER NOT NULL ,
@ -231,7 +231,7 @@ CREATE TABLE person
DISTKEY(person_id);
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE observation_period
(observation_period_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -242,7 +242,7 @@ CREATE TABLE observation_period
DISTKEY(person_id);
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE specimen
(specimen_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -263,7 +263,7 @@ CREATE TABLE specimen
DISTKEY(person_id);
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE death
(person_id INTEGER NOT NULL ,
death_date DATE NOT NULL ,
@ -276,7 +276,7 @@ CREATE TABLE death
DISTKEY(person_id);
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE visit_occurrence
(visit_occurrence_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -299,7 +299,7 @@ CREATE TABLE visit_occurrence
DISTKEY(person_id);
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE visit_detail
(visit_detail_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -324,7 +324,7 @@ CREATE TABLE visit_detail
DISTKEY(person_id);
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE procedure_occurrence
(procedure_occurrence_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -344,7 +344,7 @@ CREATE TABLE procedure_occurrence
DISTKEY(person_id);
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE drug_exposure
(drug_exposure_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -373,7 +373,7 @@ CREATE TABLE drug_exposure
DISTKEY(person_id);
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE device_exposure
(device_exposure_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -394,7 +394,7 @@ CREATE TABLE device_exposure
DISTKEY(person_id);
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE condition_occurrence
(condition_occurrence_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -416,14 +416,13 @@ CREATE TABLE condition_occurrence
DISTKEY(person_id);
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE measurement
(measurement_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
measurement_concept_id INTEGER NOT NULL ,
measurement_date DATE NOT NULL ,
measurement_time VARCHAR(10) NULL ,
measurement_datetime TIMESTAMP NULL ,
measurement_time VARCHAR(10) NULL ,
measurement_type_concept_id INTEGER NOT NULL ,
operator_concept_id INTEGER NULL ,
value_as_number FLOAT NULL ,
@ -442,7 +441,7 @@ CREATE TABLE measurement
DISTKEY(person_id);
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE note
(note_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -482,7 +481,7 @@ CREATE TABLE note_nlp
DISTSTYLE ALL;
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE observation
(observation_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -573,7 +572,7 @@ Standardized health economics
************************/
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE payer_plan_period
(payer_plan_period_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -590,7 +589,7 @@ CREATE TABLE payer_plan_period
sponsor_source_concept_id INTEGER NULL ,
family_source_value VARCHAR(50) NULL ,
stop_reason_concept_id INTEGER NULL ,
stop_reason_source_value INTEGER NULL ,
stop_reason_source_value VARCHAR(50) NULL ,
stop_reason_source_concept_id INTEGER NULL
)
DISTKEY(person_id);
@ -630,7 +629,7 @@ Standardized derived elements
************************/
--HINT DISTRIBUTE_ON_KEY(subject_id)
--HINT DISTRIBUTE_ON_KEY(subject_id)
CREATE TABLE cohort
(cohort_definition_id INTEGER NOT NULL ,
subject_id INTEGER NOT NULL ,
@ -640,7 +639,7 @@ CREATE TABLE cohort
DISTKEY(subject_id);
--HINT DISTRIBUTE_ON_KEY(subject_id)
--HINT DISTRIBUTE_ON_KEY(subject_id)
CREATE TABLE cohort_attribute
(cohort_definition_id INTEGER NOT NULL ,
subject_id INTEGER NOT NULL ,
@ -653,7 +652,7 @@ CREATE TABLE cohort_attribute
DISTKEY(subject_id);
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE drug_era
(drug_era_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -666,7 +665,7 @@ CREATE TABLE drug_era
DISTKEY(person_id);
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE dose_era
(dose_era_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,
@ -679,7 +678,7 @@ CREATE TABLE dose_era
DISTKEY(person_id);
--HINT DISTRIBUTE_ON_KEY(person_id)
--HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE condition_era
(condition_era_id INTEGER NOT NULL ,
person_id INTEGER NOT NULL ,

5
Sql Server/OMOP CDM sql server ddl.txt
View File

@ -447,8 +447,7 @@ CREATE TABLE measurement
person_id INTEGER NOT NULL ,
measurement_concept_id INTEGER NOT NULL ,
measurement_date DATE NOT NULL ,
measurement_time VARCHAR(10) NULL ,
measurement_datetime DATETIME NULL ,
measurement_time VARCHAR(10) NULL ,
measurement_type_concept_id INTEGER NOT NULL ,
operator_concept_id INTEGER NULL ,
value_as_number FLOAT NULL ,
@ -623,7 +622,7 @@ CREATE TABLE payer_plan_period
sponsor_source_concept_id INTEGER NULL ,
family_source_value VARCHAR(50) NULL ,
stop_reason_concept_id INTEGER NULL ,
stop_reason_source_value INTEGER NULL ,
stop_reason_source_value VARCHAR(50) NULL ,
stop_reason_source_concept_id INTEGER NULL
)
;