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Fixes #221

This commit is contained in:
Clair Blacketer 2018-10-26 10:27:19 -04:00
parent 33f54045c2
commit 99439a4388
6 changed files with 86 additions and 86 deletions
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2
Impala/OMOP CDM impala ddl.txt
View File

@ -279,7 +279,7 @@ CREATE TABLE visit_occurrence
admitted_from_source_value VARCHAR(50),
discharge_to_source_value VARCHAR(50) ,
discharge_to_concept_id INTEGER ,
preceding_visit_occurrence_id INTEGER
preceding_visit_occurrence_id BIGINT
)
;

2
Netezza/OMOP CDM netezza ddl.txt
View File

@ -306,7 +306,7 @@ CREATE TABLE visit_occurrence
admitted_from_source_value VARCHAR(50) NULL ,
discharge_to_source_value VARCHAR(50) NULL ,
discharge_to_concept_id INTEGER NOT NULL ,
preceding_visit_occurrence_id INTEGER NULL
preceding_visit_occurrence_id BIGINT NULL
)
DISTRIBUTE ON (person_id);

2
Oracle/OMOP CDM oracle ddl.txt
View File

@ -291,7 +291,7 @@ CREATE TABLE visit_occurrence
admitted_from_source_value VARCHAR(50) NULL ,
discharge_to_source_value VARCHAR(50) NULL ,
discharge_to_concept_id INTEGER NOT NULL ,
preceding_visit_occurrence_id INTEGER NULL
preceding_visit_occurrence_id NUMBER(19) NULL
)
;

64
ParallelDataWarehouse/OMOP CDM pdw ddl.txt
View File

@ -234,9 +234,9 @@ person (
death_datetime DATETIME2 NULL,
race_concept_id INTEGER NOT NULL,
ethnicity_concept_id INTEGER NOT NULL,
location_id INTEGER NULL,
provider_id INTEGER NULL,
care_site_id INTEGER NULL,
location_id BIGINT NULL,
provider_id BIGINT NULL,
care_site_id BIGINT NULL,
person_source_value VARCHAR(50) NULL,
gender_source_value VARCHAR(50) NULL,
gender_source_concept_id INTEGER NOT NULL,
@ -301,7 +301,7 @@ visit_occurrence (
admitted_from_source_value VARCHAR(50) NULL ,
discharge_to_source_value VARCHAR(50) NULL ,
discharge_to_concept_id INTEGER NOT NULL ,
preceding_visit_occurrence_id INTEGER NULL
preceding_visit_occurrence_id BIGINT NULL
)
WITH (DISTRIBUTION = HASH(person_id));
@ -317,8 +317,8 @@ visit_detail (
visit_detail_end_date DATE NULL ,
visit_detail_end_datetime DATETIME2 NOT NULL ,
visit_detail_type_concept_id INTEGER NOT NULL ,
provider_id INTEGER NULL ,
care_site_id INTEGER NULL ,
provider_id BIGINT NULL ,
care_site_id BIGINT NULL ,
discharge_to_concept_id INTEGER NOT NULL ,
admitted_from_concept_id INTEGER NOT NULL ,
admitted_from_source_value VARCHAR(50) NULL ,
@ -343,9 +343,9 @@ procedure_occurrence (
procedure_type_concept_id INTEGER NOT NULL ,
modifier_concept_id INTEGER NOT NULL ,
quantity INTEGER NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
procedure_source_value VARCHAR(50) NULL ,
procedure_source_concept_id INTEGER NOT NULL ,
modifier_source_value VARCHAR(50) NULL
@ -372,9 +372,9 @@ drug_exposure (
sig VARCHAR(1000) NULL ,
route_concept_id INTEGER NOT NULL ,
lot_number VARCHAR(50) NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
drug_source_value VARCHAR(50) NULL ,
drug_source_concept_id INTEGER NOT NULL ,
route_source_value VARCHAR(50) NULL ,
@ -396,9 +396,9 @@ device_exposure (
device_type_concept_id INTEGER NOT NULL ,
unique_device_id VARCHAR(50) NULL ,
quantity INTEGER NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
device_source_value VARCHAR(100) NULL ,
device_source_concept_id INTEGER NOT NULL
)
@ -411,19 +411,19 @@ condition_occurrence (
condition_occurrence_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL ,
condition_concept_id INTEGER NOT NULL ,
condition_start_date DATE NULL ,
condition_start_date DATE NULL ,
condition_start_datetime DATETIME2 NOT NULL ,
condition_end_date DATE NULL ,
condition_end_date DATE NULL ,
condition_end_datetime DATETIME2 NULL ,
condition_type_concept_id INTEGER NOT NULL ,
condition_status_concept_id INTEGER NOT NULL ,
stop_reason VARCHAR(20) NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
condition_source_value VARCHAR(50) NULL ,
stop_reason VARCHAR(20) NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
condition_source_value VARCHAR(50) NULL ,
condition_source_concept_id INTEGER NOT NULL ,
condition_status_source_value VARCHAR(50) NULL
condition_status_source_value VARCHAR(50) NULL
)
WITH (DISTRIBUTION = HASH(person_id));
@ -444,9 +444,9 @@ measurement (
unit_concept_id INTEGER NULL ,
range_low FLOAT NULL ,
range_high FLOAT NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
measurement_source_value VARCHAR(50) NULL ,
measurement_source_concept_id INTEGER NOT NULL ,
unit_source_value VARCHAR(50) NULL ,
@ -470,9 +470,9 @@ note (
note_text VARCHAR(1000) NULL ,
encoding_concept_id INTEGER NOT NULL ,
language_concept_id INTEGER NOT NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
note_source_value VARCHAR(50) NULL
)
WITH (DISTRIBUTION = HASH(person_id));
@ -513,7 +513,7 @@ observation (
value_as_concept_id INTEGER NULL ,
qualifier_concept_id INTEGER NULL ,
unit_concept_id INTEGER NULL ,
provider_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
observation_source_value VARCHAR(50) NULL ,
@ -682,8 +682,8 @@ WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE ON KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE
cost (
cost_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL,
cost_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL,
cost_event_id BIGINT NOT NULL ,
cost_event_field_concept_id INTEGER NOT NULL ,
cost_concept_id INTEGER NOT NULL ,

54
PostgreSQL/OMOP CDM postgresql ddl.txt
View File

@ -235,9 +235,9 @@ CREATE TABLE person
death_datetime TIMESTAMP NULL,
race_concept_id INTEGER NOT NULL,
ethnicity_concept_id INTEGER NOT NULL,
location_id INTEGER NULL,
provider_id INTEGER NULL,
care_site_id INTEGER NULL,
location_id BIGINT NULL,
provider_id BIGINT NULL,
care_site_id BIGINT NULL,
person_source_value VARCHAR(50) NULL,
gender_source_value VARCHAR(50) NULL,
gender_source_concept_id INTEGER NOT NULL,
@ -294,15 +294,15 @@ CREATE TABLE visit_occurrence
visit_end_date DATE NULL ,
visit_end_datetime TIMESTAMP NOT NULL ,
visit_type_concept_id INTEGER NOT NULL ,
provider_id INTEGER NULL,
care_site_id INTEGER NULL,
provider_id BIGINT NULL,
care_site_id BIGINT NULL,
visit_source_value VARCHAR(50) NULL,
visit_source_concept_id INTEGER NOT NULL ,
admitted_from_concept_id INTEGER NOT NULL ,
admitted_from_source_value VARCHAR(50) NULL ,
discharge_to_source_value VARCHAR(50) NULL ,
discharge_to_concept_id INTEGER NOT NULL ,
preceding_visit_occurrence_id INTEGER NULL
preceding_visit_occurrence_id BIGINT NULL
)
;
@ -318,8 +318,8 @@ CREATE TABLE visit_detail
visit_detail_end_date DATE NULL ,
visit_detail_end_datetime TIMESTAMP NOT NULL ,
visit_detail_type_concept_id INTEGER NOT NULL ,
provider_id INTEGER NULL ,
care_site_id INTEGER NULL ,
provider_id BIGINT NULL ,
care_site_id BIGINT NULL ,
discharge_to_concept_id INTEGER NOT NULL ,
admitted_from_concept_id INTEGER NOT NULL ,
admitted_from_source_value VARCHAR(50) NULL ,
@ -344,9 +344,9 @@ CREATE TABLE procedure_occurrence
procedure_type_concept_id INTEGER NOT NULL ,
modifier_concept_id INTEGER NOT NULL ,
quantity INTEGER NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
procedure_source_value VARCHAR(50) NULL ,
procedure_source_concept_id INTEGER NOT NULL ,
modifier_source_value VARCHAR(50) NULL
@ -373,9 +373,9 @@ CREATE TABLE drug_exposure
sig TEXT NULL ,
route_concept_id INTEGER NOT NULL ,
lot_number VARCHAR(50) NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
drug_source_value VARCHAR(50) NULL ,
drug_source_concept_id INTEGER NOT NULL ,
route_source_value VARCHAR(50) NULL ,
@ -397,9 +397,9 @@ CREATE TABLE device_exposure
device_type_concept_id INTEGER NOT NULL ,
unique_device_id VARCHAR(50) NULL ,
quantity INTEGER NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
device_source_value VARCHAR(100) NULL ,
device_source_concept_id INTEGER NOT NULL
)
@ -419,9 +419,9 @@ CREATE TABLE condition_occurrence
condition_type_concept_id INTEGER NOT NULL ,
condition_status_concept_id INTEGER NOT NULL ,
stop_reason VARCHAR(20) NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
condition_source_value VARCHAR(50) NULL ,
condition_source_concept_id INTEGER NOT NULL ,
condition_status_source_value VARCHAR(50) NULL
@ -445,9 +445,9 @@ CREATE TABLE measurement
unit_concept_id INTEGER NULL ,
range_low NUMERIC NULL ,
range_high NUMERIC NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
measurement_source_value VARCHAR(50) NULL ,
measurement_source_concept_id INTEGER NOT NULL ,
unit_source_value VARCHAR(50) NULL ,
@ -471,9 +471,9 @@ CREATE TABLE note
note_text TEXT NULL ,
encoding_concept_id INTEGER NOT NULL ,
language_concept_id INTEGER NOT NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
note_source_value VARCHAR(50) NULL
)
;
@ -514,7 +514,7 @@ CREATE TABLE observation
value_as_concept_id INTEGER NULL ,
qualifier_concept_id INTEGER NULL ,
unit_concept_id INTEGER NULL ,
provider_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
observation_source_value VARCHAR(50) NULL ,

48
Redshift/OMOP CDM redshift ddl.txt
View File

@ -221,9 +221,9 @@ CREATE TABLE person (
death_datetime TIMESTAMP NULL,
race_concept_id INTEGER NOT NULL,
ethnicity_concept_id INTEGER NOT NULL,
location_id INTEGER NULL,
provider_id INTEGER NULL,
care_site_id INTEGER NULL,
location_id BIGINT NULL,
provider_id BIGINT NULL,
care_site_id BIGINT NULL,
person_source_value VARCHAR(50) NULL,
gender_source_value VARCHAR(50) NULL,
gender_source_concept_id INTEGER NOT NULL,
@ -277,15 +277,15 @@ CREATE TABLE visit_occurrence (
visit_end_date DATE NULL ,
visit_end_datetime TIMESTAMP NOT NULL ,
visit_type_concept_id INTEGER NOT NULL ,
provider_id INTEGER NULL,
care_site_id INTEGER NULL,
provider_id BIGINT NULL,
care_site_id BIGINT NULL,
visit_source_value VARCHAR(50) NULL,
visit_source_concept_id INTEGER NOT NULL ,
admitted_from_concept_id INTEGER NOT NULL ,
admitted_from_source_value VARCHAR(50) NULL ,
discharge_to_source_value VARCHAR(50) NULL ,
discharge_to_concept_id INTEGER NOT NULL ,
preceding_visit_occurrence_id INTEGER NULL
preceding_visit_occurrence_id BIGINT NULL
)
DISTKEY(person_id);
@ -300,8 +300,8 @@ CREATE TABLE visit_detail (
visit_detail_end_date DATE NULL ,
visit_detail_end_datetime TIMESTAMP NOT NULL ,
visit_detail_type_concept_id INTEGER NOT NULL ,
provider_id INTEGER NULL ,
care_site_id INTEGER NULL ,
provider_id BIGINT NULL ,
care_site_id BIGINT NULL ,
discharge_to_concept_id INTEGER NOT NULL ,
admitted_from_concept_id INTEGER NOT NULL ,
admitted_from_source_value VARCHAR(50) NULL ,
@ -325,9 +325,9 @@ CREATE TABLE procedure_occurrence (
procedure_type_concept_id INTEGER NOT NULL ,
modifier_concept_id INTEGER NOT NULL ,
quantity INTEGER NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
procedure_source_value VARCHAR(50) NULL ,
procedure_source_concept_id INTEGER NOT NULL ,
modifier_source_value VARCHAR(50) NULL
@ -353,9 +353,9 @@ CREATE TABLE drug_exposure (
sig VARCHAR(MAX) NULL ,
route_concept_id INTEGER NOT NULL ,
lot_number VARCHAR(50) NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
drug_source_value VARCHAR(50) NULL ,
drug_source_concept_id INTEGER NOT NULL ,
route_source_value VARCHAR(50) NULL ,
@ -376,9 +376,9 @@ CREATE TABLE device_exposure (
device_type_concept_id INTEGER NOT NULL ,
unique_device_id VARCHAR(50) NULL ,
quantity INTEGER NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
device_source_value VARCHAR(100) NULL ,
device_source_concept_id INTEGER NOT NULL
)
@ -422,9 +422,9 @@ CREATE TABLE measurement (
unit_concept_id INTEGER NULL ,
range_low FLOAT NULL ,
range_high FLOAT NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
measurement_source_value VARCHAR(50) NULL ,
measurement_source_concept_id INTEGER NOT NULL ,
unit_source_value VARCHAR(50) NULL ,
@ -447,9 +447,9 @@ CREATE TABLE note (
note_text VARCHAR(MAX) NULL ,
encoding_concept_id INTEGER NOT NULL ,
language_concept_id INTEGER NOT NULL ,
provider_id INTEGER NULL ,
visit_occurrence_id INTEGER NULL ,
visit_detail_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
note_source_value VARCHAR(50) NULL
)
DISTKEY(person_id);
@ -488,7 +488,7 @@ CREATE TABLE observation
value_as_concept_id INTEGER NULL ,
qualifier_concept_id INTEGER NULL ,
unit_concept_id INTEGER NULL ,
provider_id INTEGER NULL ,
provider_id BIGINT NULL ,
visit_occurrence_id BIGINT NULL ,
visit_detail_id BIGINT NULL ,
observation_source_value VARCHAR(50) NULL ,