mz-health/OMOP
mz-health
/
OMOP
mirror of https://github.com/OHDSI/CommonDataModel.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity

Add execute test back in

This commit is contained in:
Adam Black 2021-08-19 08:33:24 -04:00
parent cea09cf273
commit c2717409d3
1 changed files with 26 additions and 26 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

52
tests/testthat/test-executeDdl.R
View File

@ -56,29 +56,29 @@ test_that("Database can be connected to", {
disconnect(con) disconnect(con)
}) })
# test_that("Execute DDL on Postgres", { test_that("Execute DDL on Postgres", {
# # make sure the schema is cleared out # make sure the schema is cleared out
# cdmDatabaseSchema <- Sys.getenv("CDMDDLBASE_POSTGRESQL_SCHEMA") cdmDatabaseSchema <- Sys.getenv("CDMDDLBASE_POSTGRESQL_SCHEMA")
# cdmVersion <- "5.4" cdmVersion <- "5.4"
# .removeConstraintsPostgresql(connectionDetails, cdmDatabaseSchema) # .removeConstraintsPostgresql(connectionDetails, cdmDatabaseSchema)
# .dropAllTablesFromSchema(connectionDetails, cdmDatabaseSchema) .dropAllTablesFromSchema(connectionDetails, cdmDatabaseSchema)
#
# executeDdl(connectionDetails, executeDdl(connectionDetails,
# cdmVersion = cdmVersion, cdmVersion = cdmVersion,
# cdmDatabaseSchema = cdmDatabaseSchema, cdmDatabaseSchema = cdmDatabaseSchema,
# executeDdl = TRUE, executeDdl = TRUE,
# executePrimaryKey = FALSE, executePrimaryKey = FALSE,
# executeForeignKey = FALSE) executeForeignKey = FALSE)
#
# tables <- .listTablesInSchema(connectionDetails, schema = cdmDatabaseSchema) tables <- .listTablesInSchema(connectionDetails, schema = cdmDatabaseSchema)
#
# cdmTableCsvLoc <- system.file(file.path("csv", paste0("OMOP_CDMv", cdmVersion, "_Table_Level.csv")), package = "CommonDataModel", mustWork = TRUE) cdmTableCsvLoc <- system.file(file.path("csv", paste0("OMOP_CDMv", cdmVersion, "_Table_Level.csv")), package = "CommonDataModel", mustWork = TRUE)
# tableSpecs <- read.csv(cdmTableCsvLoc, stringsAsFactors = FALSE)$cdmTableName tableSpecs <- read.csv(cdmTableCsvLoc, stringsAsFactors = FALSE)$cdmTableName
#
# # check that the tables in the database match the tables in the specification # check that the tables in the database match the tables in the specification
# expect_equal(sort(tables), sort(tableSpecs)) expect_equal(sort(tables), sort(tableSpecs))
#
# # clear schema # clear schema
# .removeConstraintsPostgresql(connectionDetails, cdmDatabaseSchema) # .removeConstraintsPostgresql(connectionDetails, cdmDatabaseSchema)
# .dropAllTablesFromSchema(connectionDetails, cdmDatabaseSchema) .dropAllTablesFromSchema(connectionDetails, cdmDatabaseSchema)
# }) })