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Clair Blacketer 2024-04-29 09:55:17 -04:00
parent f2f202d056
commit c92b9d7b90
3 changed files with 145 additions and 93 deletions

View File

@ -1335,7 +1335,10 @@ enrollment file, EHR healthcare encounters, or other sources.
Choose the observation_period_type_concept_id that best represents how
the period was determined. <a
href="https://athena.ohdsi.org/search-terms/terms?domain=Type+Concept&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>. A more detailed explanation of each Type Concept can be
found on the <a
href="https://github.com/OHDSI/Vocabulary-v5.0/wiki/Vocab.-TYPE_CONCEPT">vocabulary
wiki</a>.
</td>
<td style="text-align:left;">
integer
@ -1722,7 +1725,10 @@ where the record comes from.
Populate this field based on the provenance of the visit record, as in
whether it came from an EHR record or billing claim. <a
href="https://athena.ohdsi.org/search-terms/terms?domain=Type+Concept&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>. A more detailed explanation of each Type Concept can be
found on the <a
href="https://github.com/OHDSI/Vocabulary-v5.0/wiki/Vocab.-TYPE_CONCEPT">vocabulary
wiki</a>.
</td>
<td style="text-align:left;">
Integer
@ -1880,10 +1886,11 @@ concept is part of the visit domain and can indicate if a patient was
admitted to the hospital from a long-term care facility, for example.
</td>
<td style="text-align:left;">
If available, map the admitted_from_source_value to a standard concept
in the visit domain. <a
If available, map the admitting_source_value to a standard concept in
the visit domain. <a
href="https://athena.ohdsi.org/search-terms/terms?domain=Visit&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>. If a person was admitted from home or was self-referred,
set this to 0.
</td>
<td style="text-align:left;">
integer
@ -2332,7 +2339,10 @@ or where the record comes from.
Populate this field based on the provenance of the visit detail record,
as in whether it came from an EHR record or billing claim. <a
href="https://athena.ohdsi.org/search-terms/terms?domain=Type+Concept&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>. A more detailed explanation of each Type Concept can be
found on the <a
href="https://github.com/OHDSI/Vocabulary-v5.0/wiki/Vocab.-TYPE_CONCEPT">vocabulary
wiki</a>.
</td>
<td style="text-align:left;">
integer
@ -2517,10 +2527,11 @@ concept is part of the visit domain and can indicate if a patient was
admitted to the hospital from a long-term care facility, for example.
</td>
<td style="text-align:left;">
If available, map the admitted_from_source_value to a standard concept
in the visit domain. <a
If available, map the admitting_source_value to a standard concept in
the visit domain. <a
href="https://athena.ohdsi.org/search-terms/terms?domain=Visit&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>. If a person was admitted from home or was self-referred,
set this to 0.
</td>
<td style="text-align:left;">
Integer
@ -2997,7 +3008,10 @@ claim, registry, or other sources.
Choose the CONDITION_TYPE_CONCEPT_ID that best represents the provenance
of the record. <a
href="https://athena.ohdsi.org/search-terms/terms?domain=Type+Concept&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>. A more detailed explanation of each Type Concept can be
found on the <a
href="https://github.com/OHDSI/Vocabulary-v5.0/wiki/Vocab.-TYPE_CONCEPT">vocabulary
wiki</a>.
</td>
<td style="text-align:left;">
integer
@ -3644,7 +3658,10 @@ Choose the drug_type_concept_id that best represents the provenance of
the record, for example whether it came from a record of a prescription
written or physician administered drug. <a
href="https://athena.ohdsi.org/search-terms/terms?domain=Type+Concept&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>. A more detailed explanation of each Type Concept can be
found on the <a
href="https://github.com/OHDSI/Vocabulary-v5.0/wiki/Vocab.-TYPE_CONCEPT">vocabulary
wiki</a>.
</td>
<td style="text-align:left;">
integer
@ -4341,7 +4358,10 @@ of the record, for example whether it came from an EHR record or billing
claim. If a procedure is recorded as an EHR encounter, the
PROCEDURE_TYPE_CONCEPT would be EHR encounter record. <a
href="https://athena.ohdsi.org/search-terms/terms?domain=Type+Concept&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>. A more detailed explanation of each Type Concept can be
found on the <a
href="https://github.com/OHDSI/Vocabulary-v5.0/wiki/Vocab.-TYPE_CONCEPT">vocabulary
wiki</a>.
</td>
<td style="text-align:left;">
integer
@ -4885,7 +4905,10 @@ Choose the drug_type_concept_id that best represents the provenance of
the record, for example whether it came from a record of a prescription
written or physician administered drug. <a
href="https://athena.ohdsi.org/search-terms/terms?domain=Type+Concept&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>. A more detailed explanation of each Type Concept can be
found on the <a
href="https://github.com/OHDSI/Vocabulary-v5.0/wiki/Vocab.-TYPE_CONCEPT">vocabulary
wiki</a>.
</td>
<td style="text-align:left;">
integer
@ -5387,7 +5410,10 @@ Choose the MEASUREMENT_TYPE_CONCEPT_ID that best represents the
provenance of the record, for example whether it came from an EHR record
or billing claim. <a
href="https://athena.ohdsi.org/search-terms/terms?domain=Type+Concept&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>. A more detailed explanation of each Type Concept can be
found on the <a
href="https://github.com/OHDSI/Vocabulary-v5.0/wiki/Vocab.-TYPE_CONCEPT">vocabulary
wiki</a>.
</td>
<td style="text-align:left;">
integer
@ -6068,7 +6094,10 @@ Choose the OBSERVATION_TYPE_CONCEPT_ID that best represents the
provenance of the record, for example whether it came from an EHR record
or billing claim. <a
href="https://athena.ohdsi.org/search-terms/terms?domain=Type+Concept&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>. A more detailed explanation of each Type Concept can be
found on the <a
href="https://github.com/OHDSI/Vocabulary-v5.0/wiki/Vocab.-TYPE_CONCEPT">vocabulary
wiki</a>.
</td>
<td style="text-align:left;">
integer
@ -6603,7 +6632,8 @@ death_datetime
<td style="text-align:left;">
</td>
<td style="text-align:left;">
If not available set time to midnight (00:00:00)
If you have date and time of death, populate death_datetime, otherwise
leave NULL
</td>
<td style="text-align:left;">
datetime
@ -6633,9 +6663,12 @@ information from a government file so do not assume the Death Type is
the same as the Visit Type, etc.
</td>
<td style="text-align:left;">
Use the type concept that be reflects the source of the death record. <a
Use the type concept that reflects the source of the death record. <a
href="https://athena.ohdsi.org/search-terms/terms?domain=Type+Concept&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>. A more detailed explanation of each Type Concept can be
found on the <a
href="https://github.com/OHDSI/Vocabulary-v5.0/wiki/Vocab.-TYPE_CONCEPT">vocabulary
wiki</a>.
</td>
<td style="text-align:left;">
integer
@ -6928,7 +6961,10 @@ The provenance of the note. Most likely this will be EHR.
<td style="text-align:left;">
Put the source system of the note, as in EHR record. <a
href="https://athena.ohdsi.org/search-terms/terms?standardConcept=Standard&amp;domain=Type+Concept&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>. A more detailed explanation of each Type Concept can be
found on the <a
href="https://github.com/OHDSI/Vocabulary-v5.0/wiki/Vocab.-TYPE_CONCEPT">vocabulary
wiki</a>.
</td>
<td style="text-align:left;">
integer
@ -7772,7 +7808,10 @@ specimen_type_concept_id
<td style="text-align:left;">
Put the source of the specimen record, as in an EHR system. <a
href="https://athena.ohdsi.org/search-terms/terms?standardConcept=Standard&amp;domain=Type+Concept&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>. A more detailed explanation of each Type Concept can be
found on the <a
href="https://github.com/OHDSI/Vocabulary-v5.0/wiki/Vocab.-TYPE_CONCEPT">vocabulary
wiki</a>.
</td>
<td style="text-align:left;">
integer
@ -8861,11 +8900,12 @@ No
provider_name
</td>
<td style="text-align:left;">
This field contains information that describes a healthcare provider.
</td>
<td style="text-align:left;">
This field is not necessary as it is not necessary to have the actual
identity of the Provider. Rather, the idea is to uniquely and
anonymously identify providers of care across the database.
This field is not required for identifying the Providers actual
identity. Instead, its purpose is to uniquely and/or anonymously
identify providers of care across the database.
</td>
<td style="text-align:left;">
varchar(255)
@ -9099,15 +9139,18 @@ No
specialty_source_value
</td>
<td style="text-align:left;">
This is the kind of provider or specialty as it appears in the source
data. This includes physician specialties such as internal medicine,
emergency medicine, etc. and allied health professionals such as nurses,
midwives, and pharmacists.
This refers to the specific type of healthcare provider or field of
expertise listed in the source data, encompassing physician specialties
like internal medicine, emergency medicine, etc., as well as allied
health professionals such as nurses, midwives, and pharmacists. It
covers medical specialties like surgery, internal medicine, and
radiology, while other services like prosthetics, acupuncture, and
physical therapy fall under the domain of “Service.”
</td>
<td style="text-align:left;">
Put the kind of provider as it appears in the source data. This field is
up to the discretion of the ETL-er as to whether this should be the
coded value from the source or the text description of the lookup value.
The type of provider and their specialty should be entered as they
appear in the source data. The decision to use either the coded value or
the text description is left to the discretion of the ETL-er.
</td>
<td style="text-align:left;">
varchar(50)
@ -9392,13 +9435,13 @@ This field represents the organization who reimburses the provider which
administers care to the Person.
</td>
<td style="text-align:left;">
Map the Payer directly to a standard CONCEPT_ID. If one does not exists
please contact the vocabulary team. There is no global controlled
vocabulary available for this information. The point is to stratify on
this information and identify if Persons have the same payer, though the
name of the Payer is not necessary. <a
href="http://athena.ohdsi.org/search-terms/terms?domain=Payer&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Map the payer directly to a standard CONCEPT_ID with the domain_id of
Payer (<a
href="https://athena.ohdsi.org/search-terms/terms?domain=Payer&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>). This vocabulary is not exhaustive so if there is a value
missing, please see the <a
href="https://ohdsi.github.io/CommonDataModel/customConcepts.html">custom
concepts</a> page.
</td>
<td style="text-align:left;">
integer
@ -9481,13 +9524,13 @@ This field represents the specific health benefit Plan the Person is
enrolled in.
</td>
<td style="text-align:left;">
Map the Plan directly to a standard CONCEPT_ID. If one does not exists
please contact the vocabulary team. There is no global controlled
vocabulary available for this information. The point is to stratify on
this information and identify if Persons have the same health benefit
Plan though the name of the Plan is not necessary. <a
Map the Plan directly to a standard CONCEPT_ID in the Plan vocabulary
(<a
href="http://athena.ohdsi.org/search-terms/terms?domain=Plan&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>). This vocabulary is not exhaustive so if there is a value
missing, please see the <a
href="https://ohdsi.github.io/CommonDataModel/customConcepts.html">custom
concepts</a> page.
</td>
<td style="text-align:left;">
integer
@ -9572,13 +9615,13 @@ This includes self-insured, small group health plan and large group
health plan.
</td>
<td style="text-align:left;">
Map the sponsor directly to a standard CONCEPT_ID. If one does not
exists please contact the vocabulary team. There is no global controlled
vocabulary available for this information. The point is to stratify on
this information and identify if Persons have the same sponsor though
the name of the sponsor is not necessary. <a
href="http://athena.ohdsi.org/search-terms/terms?domain=Sponsor&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Map the sponsor directly to a standard CONCEPT_ID with the domain_id of
Sponsor (<a
href="https://athena.ohdsi.org/search-terms/terms?domain=Sponsor&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>). This vocabulary is not exhaustive so if there is a value
missing, please see the <a
href="https://ohdsi.github.io/CommonDataModel/customConcepts.html">custom
concepts</a> page.
</td>
<td style="text-align:left;">
integer
@ -9689,11 +9732,12 @@ stop_reason_concept_id
This field represents the reason the Person left the Plan, if known.
</td>
<td style="text-align:left;">
Map the stop reason directly to a standard CONCEPT_ID. If one does not
exists please contact the vocabulary team. There is no global controlled
vocabulary available for this information. <a
Map the stop reason directly to a standard CONCEPT_ID with a domain of
Plan Stop Reason (<a
href="http://athena.ohdsi.org/search-terms/terms?domain=Plan+Stop+Reason&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>). If one does not exist visit the <a
href="https://ohdsi.github.io/CommonDataModel/customConcepts.html">Custom
Concepts</a> pate for more information.
</td>
<td style="text-align:left;">
integer

View File

@ -2003,7 +2003,8 @@ admitted to the hospital from a long-term care facility, for example.
If available, map the admitted_from_source_value to a standard concept
in the visit domain. <a
href="https://athena.ohdsi.org/search-terms/terms?domain=Visit&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>. If a person was admitted from home, set this to 0.
Concepts</a>. If a person was admitted from home or was self-referred,
set this to 0.
</td>
<td style="text-align:left;">
integer
@ -2622,7 +2623,8 @@ admitted to the hospital from a long-term care facility, for example.
If available, map the admitted_from_source_value to a standard concept
in the visit domain. <a
href="https://athena.ohdsi.org/search-terms/terms?domain=Visit&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>. If the person was admitted from home, set this to 0.
Concepts</a>. If a person was admitted from home or was self-referred,
set this to 0.
</td>
<td style="text-align:left;">
Integer
@ -7132,7 +7134,8 @@ death_datetime
<td style="text-align:left;">
</td>
<td style="text-align:left;">
If not available set time to midnight (00:00:00)
If you have date and time of death, populate death_datetime, otherwise
leave NULL
</td>
<td style="text-align:left;">
datetime
@ -7162,7 +7165,7 @@ information from a government file so do not assume the Death Type is
the same as the Visit Type, etc.
</td>
<td style="text-align:left;">
Use the type concept that be reflects the source of the death record. <a
Use the type concept that reflects the source of the death record. <a
href="https://athena.ohdsi.org/search-terms/terms?domain=Type+Concept&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>. A more detailed explanation of each Type Concept can be
found on the <a
@ -9570,11 +9573,12 @@ No
provider_name
</td>
<td style="text-align:left;">
This field contains information that describes a healthcare provider.
</td>
<td style="text-align:left;">
This field is not necessary as it is not necessary to have the actual
identity of the Provider. Rather, the idea is to uniquely and
anonymously identify providers of care across the database.
This field is not required for identifying the Providers actual
identity. Instead, its purpose is to uniquely and/or anonymously
identify providers of care across the database.
</td>
<td style="text-align:left;">
varchar(255)
@ -9808,15 +9812,18 @@ No
specialty_source_value
</td>
<td style="text-align:left;">
This is the kind of provider or specialty as it appears in the source
data. This includes physician specialties such as internal medicine,
emergency medicine, etc. and allied health professionals such as nurses,
midwives, and pharmacists.
This refers to the specific type of healthcare provider or field of
expertise listed in the source data, encompassing physician specialties
like internal medicine, emergency medicine, etc., as well as allied
health professionals such as nurses, midwives, and pharmacists. It
covers medical specialties like surgery, internal medicine, and
radiology, while other services like prosthetics, acupuncture, and
physical therapy fall under the domain of “Service.”
</td>
<td style="text-align:left;">
Put the kind of provider as it appears in the source data. This field is
up to the discretion of the ETL-er as to whether this should be the
coded value from the source or the text description of the lookup value.
The type of provider and their specialty should be entered as they
appear in the source data. The decision to use either the coded value or
the text description is left to the discretion of the ETL-er.
</td>
<td style="text-align:left;">
varchar(50)
@ -10101,13 +10108,13 @@ This field represents the organization who reimburses the provider which
administers care to the Person.
</td>
<td style="text-align:left;">
Map the Payer directly to a standard CONCEPT_ID. If one does not exists
please contact the vocabulary team. There is no global controlled
vocabulary available for this information. The point is to stratify on
this information and identify if Persons have the same payer, though the
name of the Payer is not necessary. <a
href="http://athena.ohdsi.org/search-terms/terms?domain=Payer&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Map the payer directly to a standard CONCEPT_ID with the domain_id of
Payer (<a
href="https://athena.ohdsi.org/search-terms/terms?domain=Payer&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>). This vocabulary is not exhaustive so if there is a value
missing, please see the <a
href="https://ohdsi.github.io/CommonDataModel/customConcepts.html">custom
concepts</a> page.
</td>
<td style="text-align:left;">
integer
@ -10190,13 +10197,13 @@ This field represents the specific health benefit Plan the Person is
enrolled in.
</td>
<td style="text-align:left;">
Map the Plan directly to a standard CONCEPT_ID. If one does not exists
please contact the vocabulary team. There is no global controlled
vocabulary available for this information. The point is to stratify on
this information and identify if Persons have the same health benefit
Plan though the name of the Plan is not necessary. <a
Map the Plan directly to a standard CONCEPT_ID in the Plan vocabulary
(<a
href="http://athena.ohdsi.org/search-terms/terms?domain=Plan&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>). This vocabulary is not exhaustive so if there is a value
missing, please see the <a
href="https://ohdsi.github.io/CommonDataModel/customConcepts.html">custom
concepts</a> page.
</td>
<td style="text-align:left;">
integer
@ -10281,13 +10288,13 @@ This includes self-insured, small group health plan and large group
health plan.
</td>
<td style="text-align:left;">
Map the sponsor directly to a standard CONCEPT_ID. If one does not
exists please contact the vocabulary team. There is no global controlled
vocabulary available for this information. The point is to stratify on
this information and identify if Persons have the same sponsor though
the name of the sponsor is not necessary. <a
href="http://athena.ohdsi.org/search-terms/terms?domain=Sponsor&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Map the sponsor directly to a standard CONCEPT_ID with the domain_id of
Sponsor (<a
href="https://athena.ohdsi.org/search-terms/terms?domain=Sponsor&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>). This vocabulary is not exhaustive so if there is a value
missing, please see the <a
href="https://ohdsi.github.io/CommonDataModel/customConcepts.html">custom
concepts</a> page.
</td>
<td style="text-align:left;">
integer
@ -10398,11 +10405,12 @@ stop_reason_concept_id
This field represents the reason the Person left the Plan, if known.
</td>
<td style="text-align:left;">
Map the stop reason directly to a standard CONCEPT_ID. If one does not
exists please contact the vocabulary team. There is no global controlled
vocabulary available for this information. <a
Map the stop reason directly to a standard CONCEPT_ID with a domain of
Plan Stop Reason (<a
href="http://athena.ohdsi.org/search-terms/terms?domain=Plan+Stop+Reason&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted
Concepts</a>.
Concepts</a>). If one does not exist visit the <a
href="https://ohdsi.github.io/CommonDataModel/customConcepts.html">Custom
Concepts</a> pate for more information.
</td>
<td style="text-align:left;">
integer

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