add 5.3 DDL
This commit is contained in:
Benjamin De Boe
parent
afe69e3bf3
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cfaf26b6f0
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--iris CDM Foreign Key Constraints for OMOP Common Data Model 5.3
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_gender_concept_id FOREIGN KEY (gender_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_race_concept_id FOREIGN KEY (race_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_ethnicity_concept_id FOREIGN KEY (ethnicity_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_location_id FOREIGN KEY (location_id) REFERENCES @cdmDatabaseSchema.LOCATION (LOCATION_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_race_source_concept_id FOREIGN KEY (race_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT fpk_person_ethnicity_source_concept_id FOREIGN KEY (ethnicity_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.observation_period ADD CONSTRAINT fpk_observation_period_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.observation_period ADD CONSTRAINT fpk_observation_period_period_type_concept_id FOREIGN KEY (period_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_visit_concept_id FOREIGN KEY (visit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_visit_type_concept_id FOREIGN KEY (visit_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_visit_source_concept_id FOREIGN KEY (visit_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_admitting_source_concept_id FOREIGN KEY (admitting_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_discharge_to_concept_id FOREIGN KEY (discharge_to_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT fpk_visit_occurrence_preceding_visit_occurrence_id FOREIGN KEY (preceding_visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_visit_detail_concept_id FOREIGN KEY (visit_detail_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_visit_detail_type_concept_id FOREIGN KEY (visit_detail_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_visit_detail_source_concept_id FOREIGN KEY (visit_detail_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_admitting_source_concept_id FOREIGN KEY (admitting_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_discharge_to_concept_id FOREIGN KEY (discharge_to_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_preceding_visit_detail_id FOREIGN KEY (preceding_visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_visit_detail_parent_id FOREIGN KEY (visit_detail_parent_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT fpk_visit_detail_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_condition_type_concept_id FOREIGN KEY (condition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_condition_status_concept_id FOREIGN KEY (condition_status_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT fpk_condition_occurrence_condition_source_concept_id FOREIGN KEY (condition_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_drug_type_concept_id FOREIGN KEY (drug_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_route_concept_id FOREIGN KEY (route_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT fpk_drug_exposure_drug_source_concept_id FOREIGN KEY (drug_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_procedure_concept_id FOREIGN KEY (procedure_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_procedure_type_concept_id FOREIGN KEY (procedure_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT fpk_procedure_occurrence_modifier_concept_id FOREIGN KEY (modifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_device_concept_id FOREIGN KEY (device_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_device_type_concept_id FOREIGN KEY (device_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT fpk_device_exposure_device_source_concept_id FOREIGN KEY (device_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_measurement_concept_id FOREIGN KEY (measurement_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_measurement_type_concept_id FOREIGN KEY (measurement_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_operator_concept_id FOREIGN KEY (operator_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT fpk_measurement_measurement_source_concept_id FOREIGN KEY (measurement_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_observation_concept_id FOREIGN KEY (observation_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_observation_type_concept_id FOREIGN KEY (observation_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_qualifier_concept_id FOREIGN KEY (qualifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT fpk_observation_observation_source_concept_id FOREIGN KEY (observation_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.death ADD CONSTRAINT fpk_death_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.death ADD CONSTRAINT fpk_death_death_type_concept_id FOREIGN KEY (death_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.death ADD CONSTRAINT fpk_death_cause_concept_id FOREIGN KEY (cause_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.death ADD CONSTRAINT fpk_death_cause_source_concept_id FOREIGN KEY (cause_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_note_type_concept_id FOREIGN KEY (note_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_note_class_concept_id FOREIGN KEY (note_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_encoding_concept_id FOREIGN KEY (encoding_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_language_concept_id FOREIGN KEY (language_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT fpk_note_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE @cdmDatabaseSchema.note_nlp ADD CONSTRAINT fpk_note_nlp_section_concept_id FOREIGN KEY (section_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.note_nlp ADD CONSTRAINT fpk_note_nlp_note_nlp_concept_id FOREIGN KEY (note_nlp_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.note_nlp ADD CONSTRAINT fpk_note_nlp_note_nlp_source_concept_id FOREIGN KEY (note_nlp_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_specimen_concept_id FOREIGN KEY (specimen_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_specimen_type_concept_id FOREIGN KEY (specimen_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_anatomic_site_concept_id FOREIGN KEY (anatomic_site_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT fpk_specimen_disease_status_concept_id FOREIGN KEY (disease_status_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.fact_relationship ADD CONSTRAINT fpk_fact_relationship_domain_concept_id_1 FOREIGN KEY (domain_concept_id_1) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.fact_relationship ADD CONSTRAINT fpk_fact_relationship_domain_concept_id_2 FOREIGN KEY (domain_concept_id_2) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.fact_relationship ADD CONSTRAINT fpk_fact_relationship_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.care_site ADD CONSTRAINT fpk_care_site_place_of_service_concept_id FOREIGN KEY (place_of_service_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.care_site ADD CONSTRAINT fpk_care_site_location_id FOREIGN KEY (location_id) REFERENCES @cdmDatabaseSchema.LOCATION (LOCATION_ID);
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ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT fpk_provider_specialty_concept_id FOREIGN KEY (specialty_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT fpk_provider_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
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ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT fpk_provider_gender_concept_id FOREIGN KEY (gender_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT fpk_provider_specialty_source_concept_id FOREIGN KEY (specialty_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT fpk_provider_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
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ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_payer_concept_id FOREIGN KEY (payer_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_payer_source_concept_id FOREIGN KEY (payer_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_plan_concept_id FOREIGN KEY (plan_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_plan_source_concept_id FOREIGN KEY (plan_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_sponsor_concept_id FOREIGN KEY (sponsor_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_sponsor_source_concept_id FOREIGN KEY (sponsor_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
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ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_stop_reason_concept_id FOREIGN KEY (stop_reason_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT fpk_payer_plan_period_stop_reason_source_concept_id FOREIGN KEY (stop_reason_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT fpk_cost_cost_domain_id FOREIGN KEY (cost_domain_id) REFERENCES @cdmDatabaseSchema."DOMAIN" (DOMAIN_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT fpk_cost_cost_type_concept_id FOREIGN KEY (cost_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT fpk_cost_currency_concept_id FOREIGN KEY (currency_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT fpk_cost_revenue_code_concept_id FOREIGN KEY (revenue_code_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT fpk_cost_drg_concept_id FOREIGN KEY (drg_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.drug_era ADD CONSTRAINT fpk_drug_era_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.drug_era ADD CONSTRAINT fpk_drug_era_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.dose_era ADD CONSTRAINT fpk_dose_era_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.dose_era ADD CONSTRAINT fpk_dose_era_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.dose_era ADD CONSTRAINT fpk_dose_era_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.condition_era ADD CONSTRAINT fpk_condition_era_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.metadata ADD CONSTRAINT fpk_metadata_metadata_concept_id FOREIGN KEY (metadata_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.metadata ADD CONSTRAINT fpk_metadata_metadata_type_concept_id FOREIGN KEY (metadata_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.metadata ADD CONSTRAINT fpk_metadata_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.concept ADD CONSTRAINT fpk_concept_domain_id FOREIGN KEY (domain_id) REFERENCES @cdmDatabaseSchema."DOMAIN" (DOMAIN_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.concept ADD CONSTRAINT fpk_concept_vocabulary_id FOREIGN KEY (vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.concept ADD CONSTRAINT fpk_concept_concept_class_id FOREIGN KEY (concept_class_id) REFERENCES @cdmDatabaseSchema.CONCEPT_CLASS (CONCEPT_CLASS_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.vocabulary ADD CONSTRAINT fpk_vocabulary_vocabulary_concept_id FOREIGN KEY (vocabulary_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema."DOMAIN" ADD CONSTRAINT fpk_domain_domain_concept_id FOREIGN KEY (domain_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.concept_class ADD CONSTRAINT fpk_concept_class_concept_class_concept_id FOREIGN KEY (concept_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.concept_relationship ADD CONSTRAINT fpk_concept_relationship_concept_id_1 FOREIGN KEY (concept_id_1) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.concept_relationship ADD CONSTRAINT fpk_concept_relationship_concept_id_2 FOREIGN KEY (concept_id_2) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.concept_relationship ADD CONSTRAINT fpk_concept_relationship_relationship_id FOREIGN KEY (relationship_id) REFERENCES @cdmDatabaseSchema.RELATIONSHIP (RELATIONSHIP_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.relationship ADD CONSTRAINT fpk_relationship_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.concept_synonym ADD CONSTRAINT fpk_concept_synonym_concept_id FOREIGN KEY (concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.concept_synonym ADD CONSTRAINT fpk_concept_synonym_language_concept_id FOREIGN KEY (language_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.concept_ancestor ADD CONSTRAINT fpk_concept_ancestor_ancestor_concept_id FOREIGN KEY (ancestor_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.concept_ancestor ADD CONSTRAINT fpk_concept_ancestor_descendant_concept_id FOREIGN KEY (descendant_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_source_concept_id FOREIGN KEY (source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_target_concept_id FOREIGN KEY (target_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.source_to_concept_map ADD CONSTRAINT fpk_source_to_concept_map_target_vocabulary_id FOREIGN KEY (target_vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT fpk_drug_strength_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT fpk_drug_strength_ingredient_concept_id FOREIGN KEY (ingredient_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT fpk_drug_strength_amount_unit_concept_id FOREIGN KEY (amount_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT fpk_drug_strength_numerator_unit_concept_id FOREIGN KEY (numerator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.drug_strength ADD CONSTRAINT fpk_drug_strength_denominator_unit_concept_id FOREIGN KEY (denominator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.cohort_definition ADD CONSTRAINT fpk_cohort_definition_definition_type_concept_id FOREIGN KEY (definition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.cohort_definition ADD CONSTRAINT fpk_cohort_definition_subject_concept_id FOREIGN KEY (subject_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.attribute_definition ADD CONSTRAINT fpk_attribute_definition_attribute_type_concept_id FOREIGN KEY (attribute_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
|
|
@ -0,0 +1,471 @@
|
|||
--iris CDM DDL Specification for OMOP Common Data Model 5.3
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.person (
|
||||
person_id integer NOT NULL,
|
||||
gender_concept_id integer NOT NULL,
|
||||
year_of_birth integer NOT NULL,
|
||||
month_of_birth integer NULL,
|
||||
day_of_birth integer NULL,
|
||||
birth_datetime datetime NULL,
|
||||
race_concept_id integer NOT NULL,
|
||||
ethnicity_concept_id integer NOT NULL,
|
||||
location_id integer NULL,
|
||||
provider_id integer NULL,
|
||||
care_site_id integer NULL,
|
||||
person_source_value varchar(50) NULL,
|
||||
gender_source_value varchar(50) NULL,
|
||||
gender_source_concept_id integer NULL,
|
||||
race_source_value varchar(50) NULL,
|
||||
race_source_concept_id integer NULL,
|
||||
ethnicity_source_value varchar(50) NULL,
|
||||
ethnicity_source_concept_id integer NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.observation_period (
|
||||
observation_period_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
observation_period_start_date date NOT NULL,
|
||||
observation_period_end_date date NOT NULL,
|
||||
period_type_concept_id integer NOT NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.visit_occurrence (
|
||||
visit_occurrence_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
visit_concept_id integer NOT NULL,
|
||||
visit_start_date date NOT NULL,
|
||||
visit_start_datetime datetime NULL,
|
||||
visit_end_date date NOT NULL,
|
||||
visit_end_datetime datetime NULL,
|
||||
visit_type_concept_id Integer NOT NULL,
|
||||
provider_id integer NULL,
|
||||
care_site_id integer NULL,
|
||||
visit_source_value varchar(50) NULL,
|
||||
visit_source_concept_id integer NULL,
|
||||
admitting_source_concept_id integer NULL,
|
||||
admitting_source_value varchar(50) NULL,
|
||||
discharge_to_concept_id integer NULL,
|
||||
discharge_to_source_value varchar(50) NULL,
|
||||
preceding_visit_occurrence_id integer NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.visit_detail (
|
||||
visit_detail_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
visit_detail_concept_id integer NOT NULL,
|
||||
visit_detail_start_date date NOT NULL,
|
||||
visit_detail_start_datetime datetime NULL,
|
||||
visit_detail_end_date date NOT NULL,
|
||||
visit_detail_end_datetime datetime NULL,
|
||||
visit_detail_type_concept_id integer NOT NULL,
|
||||
provider_id integer NULL,
|
||||
care_site_id integer NULL,
|
||||
visit_detail_source_value varchar(50) NULL,
|
||||
visit_detail_source_concept_id Integer NULL,
|
||||
admitting_source_value Varchar(50) NULL,
|
||||
admitting_source_concept_id Integer NULL,
|
||||
discharge_to_source_value Varchar(50) NULL,
|
||||
discharge_to_concept_id integer NULL,
|
||||
preceding_visit_detail_id integer NULL,
|
||||
visit_detail_parent_id integer NULL,
|
||||
visit_occurrence_id integer NOT NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.condition_occurrence (
|
||||
condition_occurrence_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
condition_concept_id integer NOT NULL,
|
||||
condition_start_date date NOT NULL,
|
||||
condition_start_datetime datetime NULL,
|
||||
condition_end_date date NULL,
|
||||
condition_end_datetime datetime NULL,
|
||||
condition_type_concept_id integer NOT NULL,
|
||||
condition_status_concept_id integer NULL,
|
||||
stop_reason varchar(20) NULL,
|
||||
provider_id integer NULL,
|
||||
visit_occurrence_id integer NULL,
|
||||
visit_detail_id integer NULL,
|
||||
condition_source_value varchar(50) NULL,
|
||||
condition_source_concept_id integer NULL,
|
||||
condition_status_source_value varchar(50) NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.drug_exposure (
|
||||
drug_exposure_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
drug_concept_id integer NOT NULL,
|
||||
drug_exposure_start_date date NOT NULL,
|
||||
drug_exposure_start_datetime datetime NULL,
|
||||
drug_exposure_end_date date NOT NULL,
|
||||
drug_exposure_end_datetime datetime NULL,
|
||||
verbatim_end_date date NULL,
|
||||
drug_type_concept_id integer NOT NULL,
|
||||
stop_reason varchar(20) NULL,
|
||||
refills integer NULL,
|
||||
quantity float NULL,
|
||||
days_supply integer NULL,
|
||||
sig varchar(MAX) NULL,
|
||||
route_concept_id integer NULL,
|
||||
lot_number varchar(50) NULL,
|
||||
provider_id integer NULL,
|
||||
visit_occurrence_id integer NULL,
|
||||
visit_detail_id integer NULL,
|
||||
drug_source_value varchar(50) NULL,
|
||||
drug_source_concept_id integer NULL,
|
||||
route_source_value varchar(50) NULL,
|
||||
dose_unit_source_value varchar(50) NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.procedure_occurrence (
|
||||
procedure_occurrence_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
procedure_concept_id integer NOT NULL,
|
||||
procedure_date date NOT NULL,
|
||||
procedure_datetime datetime NULL,
|
||||
procedure_type_concept_id integer NOT NULL,
|
||||
modifier_concept_id integer NULL,
|
||||
quantity integer NULL,
|
||||
provider_id integer NULL,
|
||||
visit_occurrence_id integer NULL,
|
||||
visit_detail_id integer NULL,
|
||||
procedure_source_value varchar(50) NULL,
|
||||
procedure_source_concept_id integer NULL,
|
||||
modifier_source_value varchar(50) NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.device_exposure (
|
||||
device_exposure_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
device_concept_id integer NOT NULL,
|
||||
device_exposure_start_date date NOT NULL,
|
||||
device_exposure_start_datetime datetime NULL,
|
||||
device_exposure_end_date date NULL,
|
||||
device_exposure_end_datetime datetime NULL,
|
||||
device_type_concept_id integer NOT NULL,
|
||||
unique_device_id varchar(50) NULL,
|
||||
quantity integer NULL,
|
||||
provider_id integer NULL,
|
||||
visit_occurrence_id integer NULL,
|
||||
visit_detail_id integer NULL,
|
||||
device_source_value varchar(50) NULL,
|
||||
device_source_concept_id integer NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.measurement (
|
||||
measurement_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
measurement_concept_id integer NOT NULL,
|
||||
measurement_date date NOT NULL,
|
||||
measurement_datetime datetime NULL,
|
||||
measurement_time varchar(10) NULL,
|
||||
measurement_type_concept_id integer NOT NULL,
|
||||
operator_concept_id integer NULL,
|
||||
value_as_number float NULL,
|
||||
value_as_concept_id integer NULL,
|
||||
unit_concept_id integer NULL,
|
||||
range_low float NULL,
|
||||
range_high float NULL,
|
||||
provider_id integer NULL,
|
||||
visit_occurrence_id integer NULL,
|
||||
visit_detail_id integer NULL,
|
||||
measurement_source_value varchar(50) NULL,
|
||||
measurement_source_concept_id integer NULL,
|
||||
unit_source_value varchar(50) NULL,
|
||||
value_source_value varchar(50) NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.observation (
|
||||
observation_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
observation_concept_id integer NOT NULL,
|
||||
observation_date date NOT NULL,
|
||||
observation_datetime datetime NULL,
|
||||
observation_type_concept_id integer NOT NULL,
|
||||
value_as_number float NULL,
|
||||
value_as_string varchar(60) NULL,
|
||||
value_as_concept_id Integer NULL,
|
||||
qualifier_concept_id integer NULL,
|
||||
unit_concept_id integer NULL,
|
||||
provider_id integer NULL,
|
||||
visit_occurrence_id integer NULL,
|
||||
visit_detail_id integer NULL,
|
||||
observation_source_value varchar(50) NULL,
|
||||
observation_source_concept_id integer NULL,
|
||||
unit_source_value varchar(50) NULL,
|
||||
qualifier_source_value varchar(50) NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.death (
|
||||
person_id integer NOT NULL,
|
||||
death_date date NOT NULL,
|
||||
death_datetime datetime NULL,
|
||||
death_type_concept_id integer NULL,
|
||||
cause_concept_id integer NULL,
|
||||
cause_source_value varchar(50) NULL,
|
||||
cause_source_concept_id integer NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.note (
|
||||
note_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
note_date date NOT NULL,
|
||||
note_datetime datetime NULL,
|
||||
note_type_concept_id integer NOT NULL,
|
||||
note_class_concept_id integer NOT NULL,
|
||||
note_title varchar(250) NULL,
|
||||
note_text varchar(MAX) NOT NULL,
|
||||
encoding_concept_id integer NOT NULL,
|
||||
language_concept_id integer NOT NULL,
|
||||
provider_id integer NULL,
|
||||
visit_occurrence_id integer NULL,
|
||||
visit_detail_id integer NULL,
|
||||
note_source_value varchar(50) NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.note_nlp (
|
||||
note_nlp_id integer NOT NULL,
|
||||
note_id integer NOT NULL,
|
||||
section_concept_id integer NULL,
|
||||
snippet varchar(250) NULL,
|
||||
"offset" varchar(50) NULL,
|
||||
lexical_variant varchar(250) NOT NULL,
|
||||
note_nlp_concept_id integer NULL,
|
||||
note_nlp_source_concept_id integer NULL,
|
||||
nlp_system varchar(250) NULL,
|
||||
nlp_date date NOT NULL,
|
||||
nlp_datetime datetime NULL,
|
||||
term_exists varchar(1) NULL,
|
||||
term_temporal varchar(50) NULL,
|
||||
term_modifiers varchar(2000) NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.specimen (
|
||||
specimen_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
specimen_concept_id integer NOT NULL,
|
||||
specimen_type_concept_id integer NOT NULL,
|
||||
specimen_date date NOT NULL,
|
||||
specimen_datetime datetime NULL,
|
||||
quantity float NULL,
|
||||
unit_concept_id integer NULL,
|
||||
anatomic_site_concept_id integer NULL,
|
||||
disease_status_concept_id integer NULL,
|
||||
specimen_source_id varchar(50) NULL,
|
||||
specimen_source_value varchar(50) NULL,
|
||||
unit_source_value varchar(50) NULL,
|
||||
anatomic_site_source_value varchar(50) NULL,
|
||||
disease_status_source_value varchar(50) NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.fact_relationship (
|
||||
domain_concept_id_1 integer NOT NULL,
|
||||
fact_id_1 integer NOT NULL,
|
||||
domain_concept_id_2 integer NOT NULL,
|
||||
fact_id_2 integer NOT NULL,
|
||||
relationship_concept_id integer NOT NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.location (
|
||||
location_id integer NOT NULL,
|
||||
address_1 varchar(50) NULL,
|
||||
address_2 varchar(50) NULL,
|
||||
city varchar(50) NULL,
|
||||
state varchar(2) NULL,
|
||||
zip varchar(9) NULL,
|
||||
county varchar(20) NULL,
|
||||
location_source_value varchar(50) NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.care_site (
|
||||
care_site_id integer NOT NULL,
|
||||
care_site_name varchar(255) NULL,
|
||||
place_of_service_concept_id integer NULL,
|
||||
location_id integer NULL,
|
||||
care_site_source_value varchar(50) NULL,
|
||||
place_of_service_source_value varchar(50) NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.provider (
|
||||
provider_id integer NOT NULL,
|
||||
provider_name varchar(255) NULL,
|
||||
npi varchar(20) NULL,
|
||||
dea varchar(20) NULL,
|
||||
specialty_concept_id integer NULL,
|
||||
care_site_id integer NULL,
|
||||
year_of_birth integer NULL,
|
||||
gender_concept_id integer NULL,
|
||||
provider_source_value varchar(50) NULL,
|
||||
specialty_source_value varchar(50) NULL,
|
||||
specialty_source_concept_id integer NULL,
|
||||
gender_source_value varchar(50) NULL,
|
||||
gender_source_concept_id integer NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.payer_plan_period (
|
||||
payer_plan_period_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
payer_plan_period_start_date date NOT NULL,
|
||||
payer_plan_period_end_date date NOT NULL,
|
||||
payer_concept_id integer NULL,
|
||||
payer_source_value varchar(50) NULL,
|
||||
payer_source_concept_id integer NULL,
|
||||
plan_concept_id integer NULL,
|
||||
plan_source_value varchar(50) NULL,
|
||||
plan_source_concept_id integer NULL,
|
||||
sponsor_concept_id integer NULL,
|
||||
sponsor_source_value varchar(50) NULL,
|
||||
sponsor_source_concept_id integer NULL,
|
||||
family_source_value varchar(50) NULL,
|
||||
stop_reason_concept_id integer NULL,
|
||||
stop_reason_source_value varchar(50) NULL,
|
||||
stop_reason_source_concept_id integer NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.cost (
|
||||
cost_id integer NOT NULL,
|
||||
cost_event_id integer NOT NULL,
|
||||
cost_domain_id varchar(20) NOT NULL,
|
||||
cost_type_concept_id integer NOT NULL,
|
||||
currency_concept_id integer NULL,
|
||||
total_charge float NULL,
|
||||
total_cost float NULL,
|
||||
total_paid float NULL,
|
||||
paid_by_payer float NULL,
|
||||
paid_by_patient float NULL,
|
||||
paid_patient_copay float NULL,
|
||||
paid_patient_coinsurance float NULL,
|
||||
paid_patient_deductible float NULL,
|
||||
paid_by_primary float NULL,
|
||||
paid_ingredient_cost float NULL,
|
||||
paid_dispensing_fee float NULL,
|
||||
payer_plan_period_id integer NULL,
|
||||
amount_allowed float NULL,
|
||||
revenue_code_concept_id integer NULL,
|
||||
revenue_code_source_value varchar(50) NULL,
|
||||
drg_concept_id integer NULL,
|
||||
drg_source_value varchar(3) NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.drug_era (
|
||||
drug_era_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
drug_concept_id integer NOT NULL,
|
||||
drug_era_start_date date NOT NULL,
|
||||
drug_era_end_date date NOT NULL,
|
||||
drug_exposure_count integer NULL,
|
||||
gap_days integer NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.dose_era (
|
||||
dose_era_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
drug_concept_id integer NOT NULL,
|
||||
unit_concept_id integer NOT NULL,
|
||||
dose_value float NOT NULL,
|
||||
dose_era_start_date date NOT NULL,
|
||||
dose_era_end_date date NOT NULL );
|
||||
--HINT DISTRIBUTE ON KEY (person_id)
|
||||
CREATE TABLE @cdmDatabaseSchema.condition_era (
|
||||
condition_era_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
condition_concept_id integer NOT NULL,
|
||||
condition_era_start_date date NOT NULL,
|
||||
condition_era_end_date date NOT NULL,
|
||||
condition_occurrence_count integer NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.metadata (
|
||||
metadata_concept_id integer NOT NULL,
|
||||
metadata_type_concept_id integer NOT NULL,
|
||||
name varchar(250) NOT NULL,
|
||||
value_as_string varchar(250) NULL,
|
||||
value_as_concept_id integer NULL,
|
||||
metadata_date date NULL,
|
||||
metadata_datetime datetime NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.cdm_source (
|
||||
cdm_source_name varchar(255) NOT NULL,
|
||||
cdm_source_abbreviation varchar(25) NULL,
|
||||
cdm_holder varchar(255) NULL,
|
||||
source_description varchar(MAX) NULL,
|
||||
source_documentation_reference varchar(255) NULL,
|
||||
cdm_etl_reference varchar(255) NULL,
|
||||
source_release_date date NULL,
|
||||
cdm_release_date date NULL,
|
||||
cdm_version varchar(10) NULL,
|
||||
vocabulary_version varchar(20) NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.concept (
|
||||
concept_id integer NOT NULL,
|
||||
concept_name varchar(255) NOT NULL,
|
||||
domain_id varchar(20) NOT NULL,
|
||||
vocabulary_id varchar(20) NOT NULL,
|
||||
concept_class_id varchar(20) NOT NULL,
|
||||
standard_concept varchar(1) NULL,
|
||||
concept_code varchar(50) NOT NULL,
|
||||
valid_start_date date NOT NULL,
|
||||
valid_end_date date NOT NULL,
|
||||
invalid_reason varchar(1) NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.vocabulary (
|
||||
vocabulary_id varchar(20) NOT NULL,
|
||||
vocabulary_name varchar(255) NOT NULL,
|
||||
vocabulary_reference varchar(255) NOT NULL,
|
||||
vocabulary_version varchar(255) NULL,
|
||||
vocabulary_concept_id integer NOT NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema."DOMAIN" (
|
||||
domain_id varchar(20) NOT NULL,
|
||||
domain_name varchar(255) NOT NULL,
|
||||
domain_concept_id integer NOT NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.concept_class (
|
||||
concept_class_id varchar(20) NOT NULL,
|
||||
concept_class_name varchar(255) NOT NULL,
|
||||
concept_class_concept_id integer NOT NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.concept_relationship (
|
||||
concept_id_1 integer NOT NULL,
|
||||
concept_id_2 integer NOT NULL,
|
||||
relationship_id varchar(20) NOT NULL,
|
||||
valid_start_date date NOT NULL,
|
||||
valid_end_date date NOT NULL,
|
||||
invalid_reason varchar(1) NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.relationship (
|
||||
relationship_id varchar(20) NOT NULL,
|
||||
relationship_name varchar(255) NOT NULL,
|
||||
is_hierarchical varchar(1) NOT NULL,
|
||||
defines_ancestry varchar(1) NOT NULL,
|
||||
reverse_relationship_id varchar(20) NOT NULL,
|
||||
relationship_concept_id integer NOT NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.concept_synonym (
|
||||
concept_id integer NOT NULL,
|
||||
concept_synonym_name varchar(1000) NOT NULL,
|
||||
language_concept_id integer NOT NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.concept_ancestor (
|
||||
ancestor_concept_id integer NOT NULL,
|
||||
descendant_concept_id integer NOT NULL,
|
||||
min_levels_of_separation integer NOT NULL,
|
||||
max_levels_of_separation integer NOT NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.source_to_concept_map (
|
||||
source_code varchar(50) NOT NULL,
|
||||
source_concept_id integer NOT NULL,
|
||||
source_vocabulary_id varchar(20) NOT NULL,
|
||||
source_code_description varchar(255) NULL,
|
||||
target_concept_id integer NOT NULL,
|
||||
target_vocabulary_id varchar(20) NOT NULL,
|
||||
valid_start_date date NOT NULL,
|
||||
valid_end_date date NOT NULL,
|
||||
invalid_reason varchar(1) NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.drug_strength (
|
||||
drug_concept_id integer NOT NULL,
|
||||
ingredient_concept_id integer NOT NULL,
|
||||
amount_value float NULL,
|
||||
amount_unit_concept_id integer NULL,
|
||||
numerator_value float NULL,
|
||||
numerator_unit_concept_id integer NULL,
|
||||
denominator_value float NULL,
|
||||
denominator_unit_concept_id integer NULL,
|
||||
box_size integer NULL,
|
||||
valid_start_date date NOT NULL,
|
||||
valid_end_date date NOT NULL,
|
||||
invalid_reason varchar(1) NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.cohort_definition (
|
||||
cohort_definition_id integer NOT NULL,
|
||||
cohort_definition_name varchar(255) NOT NULL,
|
||||
cohort_definition_description varchar(MAX) NULL,
|
||||
definition_type_concept_id integer NOT NULL,
|
||||
cohort_definition_syntax varchar(MAX) NULL,
|
||||
subject_concept_id integer NOT NULL,
|
||||
cohort_initiation_date date NULL );
|
||||
--HINT DISTRIBUTE ON RANDOM
|
||||
CREATE TABLE @cdmDatabaseSchema.attribute_definition (
|
||||
attribute_definition_id integer NOT NULL,
|
||||
attribute_name varchar(255) NOT NULL,
|
||||
attribute_description varchar(MAX) NULL,
|
||||
attribute_type_concept_id integer NOT NULL,
|
||||
attribute_syntax varchar(MAX) NULL );
|
||||
|
|
@ -0,0 +1,98 @@
|
|||
/*iris OMOP CDM Indices
|
||||
There are no unique indices created because it is assumed that the primary key constraints have been run prior to
|
||||
implementing indices.
|
||||
*/
|
||||
/************************
|
||||
Standardized clinical data
|
||||
************************/
|
||||
CREATE INDEX idx_person_id ON @cdmDatabaseSchema.person (person_id ASC);
|
||||
CREATE INDEX idx_gender ON @cdmDatabaseSchema.person (gender_concept_id ASC);
|
||||
CREATE INDEX idx_observation_period_id_1 ON @cdmDatabaseSchema.observation_period (person_id ASC);
|
||||
CREATE INDEX idx_visit_person_id_1 ON @cdmDatabaseSchema.visit_occurrence (person_id ASC);
|
||||
CREATE INDEX idx_visit_concept_id_1 ON @cdmDatabaseSchema.visit_occurrence (visit_concept_id ASC);
|
||||
CREATE INDEX idx_visit_det_person_id_1 ON @cdmDatabaseSchema.visit_detail (person_id ASC);
|
||||
CREATE INDEX idx_visit_det_concept_id_1 ON @cdmDatabaseSchema.visit_detail (visit_detail_concept_id ASC);
|
||||
CREATE INDEX idx_visit_det_occ_id ON @cdmDatabaseSchema.visit_detail (visit_occurrence_id ASC);
|
||||
CREATE INDEX idx_condition_person_id_1 ON @cdmDatabaseSchema.condition_occurrence (person_id ASC);
|
||||
CREATE INDEX idx_condition_concept_id_1 ON @cdmDatabaseSchema.condition_occurrence (condition_concept_id ASC);
|
||||
CREATE INDEX idx_condition_visit_id_1 ON @cdmDatabaseSchema.condition_occurrence (visit_occurrence_id ASC);
|
||||
CREATE INDEX idx_drug_person_id_1 ON @cdmDatabaseSchema.drug_exposure (person_id ASC);
|
||||
CREATE INDEX idx_drug_concept_id_1 ON @cdmDatabaseSchema.drug_exposure (drug_concept_id ASC);
|
||||
CREATE INDEX idx_drug_visit_id_1 ON @cdmDatabaseSchema.drug_exposure (visit_occurrence_id ASC);
|
||||
CREATE INDEX idx_procedure_person_id_1 ON @cdmDatabaseSchema.procedure_occurrence (person_id ASC);
|
||||
CREATE INDEX idx_procedure_concept_id_1 ON @cdmDatabaseSchema.procedure_occurrence (procedure_concept_id ASC);
|
||||
CREATE INDEX idx_procedure_visit_id_1 ON @cdmDatabaseSchema.procedure_occurrence (visit_occurrence_id ASC);
|
||||
CREATE INDEX idx_device_person_id_1 ON @cdmDatabaseSchema.device_exposure (person_id ASC);
|
||||
CREATE INDEX idx_device_concept_id_1 ON @cdmDatabaseSchema.device_exposure (device_concept_id ASC);
|
||||
CREATE INDEX idx_device_visit_id_1 ON @cdmDatabaseSchema.device_exposure (visit_occurrence_id ASC);
|
||||
CREATE INDEX idx_measurement_person_id_1 ON @cdmDatabaseSchema.measurement (person_id ASC);
|
||||
CREATE INDEX idx_measurement_concept_id_1 ON @cdmDatabaseSchema.measurement (measurement_concept_id ASC);
|
||||
CREATE INDEX idx_measurement_visit_id_1 ON @cdmDatabaseSchema.measurement (visit_occurrence_id ASC);
|
||||
CREATE INDEX idx_observation_person_id_1 ON @cdmDatabaseSchema.observation (person_id ASC);
|
||||
CREATE INDEX idx_observation_concept_id_1 ON @cdmDatabaseSchema.observation (observation_concept_id ASC);
|
||||
CREATE INDEX idx_observation_visit_id_1 ON @cdmDatabaseSchema.observation (visit_occurrence_id ASC);
|
||||
CREATE INDEX idx_death_person_id_1 ON @cdmDatabaseSchema.death (person_id ASC);
|
||||
CREATE INDEX idx_note_person_id_1 ON @cdmDatabaseSchema.note (person_id ASC);
|
||||
CREATE INDEX idx_note_concept_id_1 ON @cdmDatabaseSchema.note (note_type_concept_id ASC);
|
||||
CREATE INDEX idx_note_visit_id_1 ON @cdmDatabaseSchema.note (visit_occurrence_id ASC);
|
||||
CREATE INDEX idx_note_nlp_note_id_1 ON @cdmDatabaseSchema.note_nlp (note_id ASC);
|
||||
CREATE INDEX idx_note_nlp_concept_id_1 ON @cdmDatabaseSchema.note_nlp (note_nlp_concept_id ASC);
|
||||
CREATE INDEX idx_specimen_person_id_1 ON @cdmDatabaseSchema.specimen (person_id ASC);
|
||||
CREATE INDEX idx_specimen_concept_id_1 ON @cdmDatabaseSchema.specimen (specimen_concept_id ASC);
|
||||
CREATE INDEX idx_fact_relationship_id1 ON @cdmDatabaseSchema.fact_relationship (domain_concept_id_1 ASC);
|
||||
CREATE INDEX idx_fact_relationship_id2 ON @cdmDatabaseSchema.fact_relationship (domain_concept_id_2 ASC);
|
||||
CREATE INDEX idx_fact_relationship_id3 ON @cdmDatabaseSchema.fact_relationship (relationship_concept_id ASC);
|
||||
/************************
|
||||
Standardized health system data
|
||||
************************/
|
||||
CREATE INDEX idx_location_id_1 ON @cdmDatabaseSchema.location (location_id ASC);
|
||||
CREATE INDEX idx_care_site_id_1 ON @cdmDatabaseSchema.care_site (care_site_id ASC);
|
||||
CREATE INDEX idx_provider_id_1 ON @cdmDatabaseSchema.provider (provider_id ASC);
|
||||
/************************
|
||||
Standardized health economics
|
||||
************************/
|
||||
CREATE INDEX idx_period_person_id_1 ON @cdmDatabaseSchema.payer_plan_period (person_id ASC);
|
||||
CREATE INDEX idx_cost_event_id ON @cdmDatabaseSchema.cost (cost_event_id ASC);
|
||||
/************************
|
||||
Standardized derived elements
|
||||
************************/
|
||||
CREATE INDEX idx_drug_era_person_id_1 ON @cdmDatabaseSchema.drug_era (person_id ASC);
|
||||
CREATE INDEX idx_drug_era_concept_id_1 ON @cdmDatabaseSchema.drug_era (drug_concept_id ASC);
|
||||
CREATE INDEX idx_dose_era_person_id_1 ON @cdmDatabaseSchema.dose_era (person_id ASC);
|
||||
CREATE INDEX idx_dose_era_concept_id_1 ON @cdmDatabaseSchema.dose_era (drug_concept_id ASC);
|
||||
CREATE INDEX idx_condition_era_person_id_1 ON @cdmDatabaseSchema.condition_era (person_id ASC);
|
||||
CREATE INDEX idx_condition_era_concept_id_1 ON @cdmDatabaseSchema.condition_era (condition_concept_id ASC);
|
||||
/**************************
|
||||
Standardized meta-data
|
||||
***************************/
|
||||
CREATE INDEX idx_metadata_concept_id_1 ON @cdmDatabaseSchema.metadata (metadata_concept_id ASC);
|
||||
/**************************
|
||||
Standardized vocabularies
|
||||
***************************/
|
||||
CREATE INDEX idx_concept_concept_id ON @cdmDatabaseSchema.concept (concept_id ASC);
|
||||
CREATE INDEX idx_concept_code ON @cdmDatabaseSchema.concept (concept_code ASC);
|
||||
CREATE INDEX idx_concept_vocabulary_id ON @cdmDatabaseSchema.concept (vocabulary_id ASC);
|
||||
CREATE INDEX idx_concept_domain_id ON @cdmDatabaseSchema.concept (domain_id ASC);
|
||||
CREATE INDEX idx_concept_class_id ON @cdmDatabaseSchema.concept (concept_class_id ASC);
|
||||
CREATE INDEX idx_vocabulary_vocabulary_id ON @cdmDatabaseSchema.vocabulary (vocabulary_id ASC);
|
||||
CREATE INDEX idx_domain_domain_id ON @cdmDatabaseSchema."DOMAIN" (domain_id ASC);
|
||||
CREATE INDEX idx_concept_class_class_id ON @cdmDatabaseSchema.concept_class (concept_class_id ASC);
|
||||
CREATE INDEX idx_concept_relationship_id_1 ON @cdmDatabaseSchema.concept_relationship (concept_id_1 ASC);
|
||||
CREATE INDEX idx_concept_relationship_id_2 ON @cdmDatabaseSchema.concept_relationship (concept_id_2 ASC);
|
||||
CREATE INDEX idx_concept_relationship_id_3 ON @cdmDatabaseSchema.concept_relationship (relationship_id ASC);
|
||||
CREATE INDEX idx_relationship_rel_id ON @cdmDatabaseSchema.relationship (relationship_id ASC);
|
||||
CREATE INDEX idx_concept_synonym_id ON @cdmDatabaseSchema.concept_synonym (concept_id ASC);
|
||||
CREATE INDEX idx_concept_ancestor_id_1 ON @cdmDatabaseSchema.concept_ancestor (ancestor_concept_id ASC);
|
||||
CREATE INDEX idx_concept_ancestor_id_2 ON @cdmDatabaseSchema.concept_ancestor (descendant_concept_id ASC);
|
||||
CREATE INDEX idx_source_to_concept_map_3 ON @cdmDatabaseSchema.source_to_concept_map (target_concept_id ASC);
|
||||
CREATE INDEX idx_source_to_concept_map_1 ON @cdmDatabaseSchema.source_to_concept_map (source_vocabulary_id ASC);
|
||||
CREATE INDEX idx_source_to_concept_map_2 ON @cdmDatabaseSchema.source_to_concept_map (target_vocabulary_id ASC);
|
||||
CREATE INDEX idx_source_to_concept_map_c ON @cdmDatabaseSchema.source_to_concept_map (source_code ASC);
|
||||
CREATE INDEX idx_drug_strength_id_1 ON @cdmDatabaseSchema.drug_strength (drug_concept_id ASC);
|
||||
CREATE INDEX idx_drug_strength_id_2 ON @cdmDatabaseSchema.drug_strength (ingredient_concept_id ASC);
|
||||
--Additional v6.0 indices
|
||||
--CREATE CLUSTERED INDEX idx_survey_person_id_1 ON @cdmDatabaseSchema.survey_conduct (person_id ASC);
|
||||
--CREATE CLUSTERED INDEX idx_episode_person_id_1 ON @cdmDatabaseSchema.episode (person_id ASC);
|
||||
--CREATE INDEX idx_episode_concept_id_1 ON @cdmDatabaseSchema.episode (episode_concept_id ASC);
|
||||
--CREATE CLUSTERED INDEX idx_episode_event_id_1 ON @cdmDatabaseSchema.episode_event (episode_id ASC);
|
||||
--CREATE INDEX idx_ee_field_concept_id_1 ON @cdmDatabaseSchema.episode_event (event_field_concept_id ASC);
|
||||
|
|
@ -0,0 +1,27 @@
|
|||
--iris CDM Primary Key Constraints for OMOP Common Data Model 5.3
|
||||
ALTER TABLE @cdmDatabaseSchema.person ADD CONSTRAINT xpk_person PRIMARY KEY (person_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.observation_period ADD CONSTRAINT xpk_observation_period PRIMARY KEY (observation_period_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.visit_occurrence ADD CONSTRAINT xpk_visit_occurrence PRIMARY KEY (visit_occurrence_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.visit_detail ADD CONSTRAINT xpk_visit_detail PRIMARY KEY (visit_detail_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.condition_occurrence ADD CONSTRAINT xpk_condition_occurrence PRIMARY KEY (condition_occurrence_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.drug_exposure ADD CONSTRAINT xpk_drug_exposure PRIMARY KEY (drug_exposure_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.procedure_occurrence ADD CONSTRAINT xpk_procedure_occurrence PRIMARY KEY (procedure_occurrence_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.device_exposure ADD CONSTRAINT xpk_device_exposure PRIMARY KEY (device_exposure_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.measurement ADD CONSTRAINT xpk_measurement PRIMARY KEY (measurement_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.observation ADD CONSTRAINT xpk_observation PRIMARY KEY (observation_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.note ADD CONSTRAINT xpk_note PRIMARY KEY (note_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.note_nlp ADD CONSTRAINT xpk_note_nlp PRIMARY KEY (note_nlp_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.specimen ADD CONSTRAINT xpk_specimen PRIMARY KEY (specimen_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.location ADD CONSTRAINT xpk_location PRIMARY KEY (location_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.care_site ADD CONSTRAINT xpk_care_site PRIMARY KEY (care_site_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.provider ADD CONSTRAINT xpk_provider PRIMARY KEY (provider_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.payer_plan_period ADD CONSTRAINT xpk_payer_plan_period PRIMARY KEY (payer_plan_period_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.cost ADD CONSTRAINT xpk_cost PRIMARY KEY (cost_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.drug_era ADD CONSTRAINT xpk_drug_era PRIMARY KEY (drug_era_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.dose_era ADD CONSTRAINT xpk_dose_era PRIMARY KEY (dose_era_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.condition_era ADD CONSTRAINT xpk_condition_era PRIMARY KEY (condition_era_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.concept ADD CONSTRAINT xpk_concept PRIMARY KEY (concept_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.vocabulary ADD CONSTRAINT xpk_vocabulary PRIMARY KEY (vocabulary_id);
|
||||
ALTER TABLE @cdmDatabaseSchema."DOMAIN" ADD CONSTRAINT xpk_domain PRIMARY KEY (domain_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.concept_class ADD CONSTRAINT xpk_concept_class PRIMARY KEY (concept_class_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.relationship ADD CONSTRAINT xpk_relationship PRIMARY KEY (relationship_id);
|
||||
Loading…
Reference in New Issue