Update OMOP CDM indexes required - SQL Server.sql
We added some more required indexes, which were identified by running the 'Estimated Execution Plan' in the Microsoft SQL Management Studio. Some related discussions are here: http://forums.ohdsi.org/t/incremental-achilles/1847
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Rae Woong Park
GitHub
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@ -185,3 +185,178 @@ CREATE INDEX idx_dose_era_concept_id ON dose_era (drug_concept_id ASC);
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CREATE CLUSTERED INDEX idx_condition_era_person_id ON condition_era (person_id ASC);
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CREATE INDEX idx_condition_era_concept_id ON condition_era (condition_concept_id ASC);
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/****************************************************************************************************************************************
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***************************************************** Non Cluster Index **************************************************************
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****************************************************************************************************************************************
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**********************************/
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/* PERSON */
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USE [Camel_DB]
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GO
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CREATE NONCLUSTERED INDEX [<PERSON_1, sysname,>]
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ON [dbo].[PERSON] ([person_id])
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INCLUDE ([year_of_birth],[gender_concept_id] );
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GO;
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CREATE NONCLUSTERED INDEX [<PERSON_2, sysname,>]
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ON [dbo].[PERSON] ([location_id])
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INCLUDE ([person_id]);
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GO;
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CREATE NONCLUSTERED INDEX [<PERSON_3, sysname,>]
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ON [dbo].[PERSON] ([provider_id]);
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GO;
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CREATE NONCLUSTERED INDEX [<PERSON_4, sysname,>]
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ON [dbo].[PERSON] ([care_site_id]);
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GO;
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/* OBSERVATION */
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USE [Camel_DB];
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GO;
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CREATE NONCLUSTERED INDEX [<OBSERVATION_1, sysname,>]
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ON [dbo].[OBSERVATION] ([provider_id]);
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GO;
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CREATE NONCLUSTERED INDEX [<OBSERVATION_2, sysname,>]
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ON [dbo].[OBSERVATION] ([visit_occurrence_id]);
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GO;
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CREATE NONCLUSTERED INDEX [<OBSERVATION_3, sysname,>]
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ON [dbo].[OBSERVATION] ([value_as_number],[unit_concept_id])
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INCLUDE ([observation_concept_id]);
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GO;
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/* OBSERVATION_PERIOD */
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CREATE NONCLUSTERED INDEX [<OBSERVATION_PERIOD_4, sysname,>]
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ON [dbo].[OBSERVATION_PERIOD] ([PERSON_ID])
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INCLUDE ([OBSERVATION_PERIOD_START_DATE]);
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GO;
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CREATE NONCLUSTERED INDEX [<OBSERVATION_PERIOD_5, sysname,>]
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ON [dbo].[OBSERVATION_PERIOD] ([OBSERVATION_PERIOD_START_DATE],[OBSERVATION_PERIOD_END_DATE])
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INCLUDE ([PERSON_ID]);
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GO;
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/* VISIT */
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CREATE NONCLUSTERED INDEX [<VISIT_1, sysname,>]
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ON [dbo].[VISIT_OCCURRENCE] ([care_site_id]);
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GO;
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/* CONDITION */
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CREATE NONCLUSTERED INDEX [<CONDITION_1, sysname,>]
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ON [dbo].[CONDITION_OCCURRENCE] ([provider_id]);
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GO;
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CREATE NONCLUSTERED INDEX [<CONDITION_2, sysname,>]
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ON [dbo].[CONDITION_OCCURRENCE] ([visit_occurrence_id]);
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GO;
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/* CONDITION_ERA */
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CREATE NONCLUSTERED INDEX [<CONDITION_ERA_1, sysname,>]
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ON [dbo].[CONDITION_ERA] ([person_id])
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INCLUDE ([condition_concept_id],[condition_era_start_date]);
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GO;
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/* PROCEDURE */
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CREATE NONCLUSTERED INDEX [<PROCEDURE_1, sysname,>]
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ON [dbo].[PROCEDURE_OCCURRENCE] ([provider_id], [visit_occurrence_id]);
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GO;
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/* DRUG */
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CREATE NONCLUSTERED INDEX [<DRUG_1, sysname,>]
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ON [dbo].[DRUG_EXPOSURE] ([provider_id]);
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GO;
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CREATE NONCLUSTERED INDEX [<DRUG_2, sysname,>]
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ON [dbo].[DRUG_EXPOSURE] ([visit_occurrence_id])
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GO;
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CREATE NONCLUSTERED INDEX [<DRUG_3, sysname,>]
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ON [dbo].[DRUG_EXPOSURE] ([days_supply])
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INCLUDE ([drug_concept_id])
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GO;
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CREATE NONCLUSTERED INDEX [<DRUG_4, sysname,>]
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ON [dbo].[DRUG_EXPOSURE] ([refills])
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INCLUDE ([drug_concept_id])
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GO;
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CREATE NONCLUSTERED INDEX [<DRUG_5, sysname,>]
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ON [dbo].[DRUG_EXPOSURE] ([quantity])
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INCLUDE ([drug_concept_id])
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GO;
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CREATE NONCLUSTERED INDEX [<DRUG_6, sysname,>]
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ON [dbo].[DRUG_EXPOSURE] ([drug_concept_id])
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INCLUDE ([drug_source_value])
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GO;
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/* DRUG_ERA */
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CREATE NONCLUSTERED INDEX [<DRUG_ERA_1, sysname,>]
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ON [dbo].[DRUG_ERA] ([person_id])
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INCLUDE ([drug_concept_id],[drug_era_start_date])
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GO;
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/* MEASUREMENT */
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CREATE NONCLUSTERED INDEX [<MEASUREMENT_1, sysname,>]
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ON [dbo].[MEASUREMENT] ([person_id])
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INCLUDE ([measurement_concept_id],[measurement_date]);
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GO;
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CREATE NONCLUSTERED INDEX [<MEASUREMENT_2, sysname,>]
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ON [dbo].[MEASUREMENT] ([provider_id]);
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GO;
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CREATE NONCLUSTERED INDEX [<MEASUREMENT_3, sysname,>]
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ON [dbo].[MEASUREMENT] ([visit_occurrence_id]);
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GO;
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CREATE NONCLUSTERED INDEX [<MEASUREMENT_4, sysname,>]
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ON [dbo].[MEASUREMENT] ([value_as_number],[value_as_concept_id]);
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GO;
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CREATE NONCLUSTERED INDEX [<MEASUREMENT_5, sysname,>]
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ON [dbo].[MEASUREMENT] ([value_as_number],[unit_concept_id])
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INCLUDE ([measurement_concept_id]);
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GO;
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CREATE NONCLUSTERED INDEX [<MEASUREMENT_6, sysname,>]
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ON [dbo].[MEASUREMENT] ([value_as_number],[unit_concept_id],[range_low],[range_high])
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INCLUDE ([measurement_concept_id]);
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GO;
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CREATE NONCLUSTERED INDEX [<MEASUREMENT_7, sysname,>]
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ON [dbo].[MEASUREMENT] ([value_as_number]);
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GO;
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/* PROVIDER */
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CREATE NONCLUSTERED INDEX [<PROVIDER_1, sysname,>]
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ON [dbo].[PROVIDER] ([care_site_id]);
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GO;
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/* PAYER_PLAN_PERIOD */
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CREATE NONCLUSTERED INDEX [<PAYER_PLAN_PERIOD_1, sysname,>]
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ON [dbo].[PAYER_PLAN_PERIOD] ([person_id])
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INCLUDE ([payer_plan_period_start_date],[payer_plan_period_end_date]);
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GO;
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/* ACHILLES_results */
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CREATE NONCLUSTERED INDEX [<ACHILLES_RESULTS, sysname,>]
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ON [dbo].[ACHILLES_results] ([count_value]);
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GO;
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