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Updated files to include optional vocabulary version and datetimes in era tables

This commit is contained in:
clairblacketer 2018-10-02 09:50:48 -04:00
parent 046feb3fea
commit df9e11a2d5
6 changed files with 131 additions and 131 deletions
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42
Netezza/OMOP CDM netezza ddl.txt
View File

@ -64,7 +64,7 @@ CREATE TABLE vocabulary (
vocabulary_id VARCHAR(20) NOT NULL, vocabulary_id VARCHAR(20) NOT NULL,
vocabulary_name VARCHAR(255) NOT NULL, vocabulary_name VARCHAR(255) NOT NULL,
vocabulary_reference VARCHAR(255) NOT NULL, vocabulary_reference VARCHAR(255) NOT NULL,
vocabulary_version VARCHAR(255) NOT NULL, vocabulary_version VARCHAR(255) NULL,
vocabulary_concept_id INTEGER NOT NULL vocabulary_concept_id INTEGER NOT NULL
) )
DISTRIBUTE ON RANDOM DISTRIBUTE ON RANDOM
@ -736,13 +736,13 @@ Standardized derived elements
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE drug_era CREATE TABLE drug_era
( (
drug_era_id BIGINT NOT NULL , drug_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL , person_id BIGINT NOT NULL ,
drug_concept_id INTEGER NOT NULL , drug_concept_id INTEGER NOT NULL ,
drug_era_start_date DATE NOT NULL , drug_era_start_datetime DATETIME NOT NULL ,
drug_era_end_date DATE NOT NULL , drug_era_end_datetime DATETIME NOT NULL ,
drug_exposure_count INTEGER NULL , drug_exposure_count INTEGER NULL ,
gap_days INTEGER NULL gap_days INTEGER NULL
) )
DISTRIBUTE ON (person_id) DISTRIBUTE ON (person_id)
; ;
@ -751,13 +751,13 @@ DISTRIBUTE ON (person_id)
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE dose_era CREATE TABLE dose_era
( (
dose_era_id BIGINT NOT NULL , dose_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL , person_id BIGINT NOT NULL ,
drug_concept_id INTEGER NOT NULL , drug_concept_id INTEGER NOT NULL ,
unit_concept_id INTEGER NOT NULL , unit_concept_id INTEGER NOT NULL ,
dose_value REAL NOT NULL , dose_value REAL NOT NULL ,
dose_era_start_date DATE NOT NULL , dose_era_start_datetime DATETIME NOT NULL ,
dose_era_end_date DATE NOT NULL dose_era_end_datetime DATETIME NOT NULL
) )
DISTRIBUTE ON (person_id) DISTRIBUTE ON (person_id)
; ;
@ -766,12 +766,12 @@ DISTRIBUTE ON (person_id)
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE condition_era CREATE TABLE condition_era
( (
condition_era_id BIGINT NOT NULL , condition_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL , person_id BIGINT NOT NULL ,
condition_concept_id INTEGER NOT NULL , condition_concept_id INTEGER NOT NULL ,
condition_era_start_date DATE NOT NULL , condition_era_start_datetime DATETIME NOT NULL ,
condition_era_end_date DATE NOT NULL , condition_era_end_datetime DATETIME NOT NULL ,
condition_occurrence_count INTEGER NULL condition_occurrence_count INTEGER NULL
) )
DISTRIBUTE ON (person_id) DISTRIBUTE ON (person_id)
; ;

42
Oracle/OMOP CDM oracle ddl.txt
View File

@ -63,7 +63,7 @@ CREATE TABLE vocabulary (
vocabulary_id VARCHAR(20) NOT NULL, vocabulary_id VARCHAR(20) NOT NULL,
vocabulary_name VARCHAR(255) NOT NULL, vocabulary_name VARCHAR(255) NOT NULL,
vocabulary_reference VARCHAR(255) NOT NULL, vocabulary_reference VARCHAR(255) NOT NULL,
vocabulary_version VARCHAR(255) NOT NULL, vocabulary_version VARCHAR(255) NULL,
vocabulary_concept_id INTEGER NOT NULL vocabulary_concept_id INTEGER NOT NULL
) )
; ;
@ -704,13 +704,13 @@ Standardized derived elements
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE drug_era CREATE TABLE drug_era
( (
drug_era_id NUMBER(19) NOT NULL , drug_era_id NUMBER(19) NOT NULL ,
person_id NUMBER(19) NOT NULL , person_id NUMBER(19) NOT NULL ,
drug_concept_id INTEGER NOT NULL , drug_concept_id INTEGER NOT NULL ,
drug_era_start_date DATE NOT NULL , drug_era_start_datetime TIMESTAMP NOT NULL ,
drug_era_end_date DATE NOT NULL , drug_era_end_datetime TIMESTAMP NOT NULL ,
drug_exposure_count INTEGER NULL , drug_exposure_count INTEGER NULL ,
gap_days INTEGER NULL gap_days INTEGER NULL
) )
; ;
@ -718,13 +718,13 @@ CREATE TABLE drug_era
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE dose_era CREATE TABLE dose_era
( (
dose_era_id NUMBER(19) NOT NULL , dose_era_id NUMBER(19) NOT NULL ,
person_id NUMBER(19) NOT NULL , person_id NUMBER(19) NOT NULL ,
drug_concept_id INTEGER NOT NULL , drug_concept_id INTEGER NOT NULL ,
unit_concept_id INTEGER NOT NULL , unit_concept_id INTEGER NOT NULL ,
dose_value FLOAT NOT NULL , dose_value FLOAT NOT NULL ,
dose_era_start_date DATE NOT NULL , dose_era_start_datetime TIMESTAMP NOT NULL ,
dose_era_end_date DATE NOT NULL dose_era_end_datetime TIMESTAMP NOT NULL
) )
; ;
@ -732,11 +732,11 @@ CREATE TABLE dose_era
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE condition_era CREATE TABLE condition_era
( (
condition_era_id NUMBER(19) NOT NULL , condition_era_id NUMBER(19) NOT NULL ,
person_id NUMBER(19) NOT NULL , person_id NUMBER(19) NOT NULL ,
condition_concept_id INTEGER NOT NULL , condition_concept_id INTEGER NOT NULL ,
condition_era_start_date DATE NOT NULL , condition_era_start_datetime TIMESTAMP NOT NULL ,
condition_era_end_date DATE NOT NULL , condition_era_end_datetime TIMESTAMP NOT NULL ,
condition_occurrence_count INTEGER NULL condition_occurrence_count INTEGER NULL
) )
; ;

44
ParallelDataWarehouse/OMOP CDM pdw ddl.txt
View File

@ -65,8 +65,8 @@ vocabulary (
vocabulary_id VARCHAR(20) NOT NULL, vocabulary_id VARCHAR(20) NOT NULL,
vocabulary_name VARCHAR(255) NOT NULL, vocabulary_name VARCHAR(255) NOT NULL,
vocabulary_reference VARCHAR(255) NOT NULL, vocabulary_reference VARCHAR(255) NOT NULL,
vocabulary_version VARCHAR(255) NOT NULL, vocabulary_version VARCHAR(255) NULL,
vocabulary_concept_id INTEGER NOT NULL vocabulary_concept_id INTEGER NOT NULL
) )
WITH (DISTRIBUTION = REPLICATE); WITH (DISTRIBUTION = REPLICATE);
@ -714,13 +714,13 @@ Standardized derived elements
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE IF XACT_STATE() = 1 COMMIT; CREATE TABLE
drug_era ( drug_era (
drug_era_id BIGINT NOT NULL , drug_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL , person_id BIGINT NOT NULL ,
drug_concept_id INTEGER NOT NULL , drug_concept_id INTEGER NOT NULL ,
drug_era_start_date DATE NOT NULL , drug_era_start_datetime DATETIME2 NOT NULL ,
drug_era_end_date DATE NOT NULL , drug_era_end_datetime DATETIME2 NOT NULL ,
drug_exposure_count INTEGER NULL , drug_exposure_count INTEGER NULL ,
gap_days INTEGER NULL gap_days INTEGER NULL
) )
WITH (DISTRIBUTION = HASH(person_id)); WITH (DISTRIBUTION = HASH(person_id));
@ -728,13 +728,13 @@ WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE IF XACT_STATE() = 1 COMMIT; CREATE TABLE
dose_era ( dose_era (
dose_era_id BIGINT NOT NULL , dose_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL , person_id BIGINT NOT NULL ,
drug_concept_id INTEGER NOT NULL , drug_concept_id INTEGER NOT NULL ,
unit_concept_id INTEGER NOT NULL , unit_concept_id INTEGER NOT NULL ,
dose_value FLOAT NOT NULL , dose_value FLOAT NOT NULL ,
dose_era_start_date DATE NOT NULL , dose_era_start_datetime DATETIME2 NOT NULL ,
dose_era_end_date DATE NOT NULL dose_era_end_datetime DATETIME2 NOT NULL
) )
WITH (DISTRIBUTION = HASH(person_id)); WITH (DISTRIBUTION = HASH(person_id));
@ -742,11 +742,11 @@ WITH (DISTRIBUTION = HASH(person_id));
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
IF XACT_STATE() = 1 COMMIT; CREATE TABLE IF XACT_STATE() = 1 COMMIT; CREATE TABLE
condition_era ( condition_era (
condition_era_id BIGINT NOT NULL , condition_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL , person_id BIGINT NOT NULL ,
condition_concept_id INTEGER NOT NULL , condition_concept_id INTEGER NOT NULL ,
condition_era_start_date DATE NOT NULL , condition_era_start_datetime DATETIME2 NOT NULL ,
condition_era_end_date DATE NOT NULL , condition_era_end_datetime DATETIME2 NOT NULL ,
condition_occurrence_count INTEGER NULL condition_occurrence_count INTEGER NULL
) )
WITH (DISTRIBUTION = HASH(person_id)); WITH (DISTRIBUTION = HASH(person_id));

42
PostgreSQL/OMOP CDM postgresql ddl.txt
View File

@ -63,7 +63,7 @@ CREATE TABLE vocabulary (
vocabulary_id VARCHAR(20) NOT NULL, vocabulary_id VARCHAR(20) NOT NULL,
vocabulary_name VARCHAR(255) NOT NULL, vocabulary_name VARCHAR(255) NOT NULL,
vocabulary_reference VARCHAR(255) NOT NULL, vocabulary_reference VARCHAR(255) NOT NULL,
vocabulary_version VARCHAR(255) NOT NULL, vocabulary_version VARCHAR(255) NULL,
vocabulary_concept_id INTEGER NOT NULL vocabulary_concept_id INTEGER NOT NULL
) )
; ;
@ -729,13 +729,13 @@ Standardized derived elements
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE drug_era CREATE TABLE drug_era
( (
drug_era_id BIGINT NOT NULL , drug_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL , person_id BIGINT NOT NULL ,
drug_concept_id INTEGER NOT NULL , drug_concept_id INTEGER NOT NULL ,
drug_era_start_date DATE NOT NULL , drug_era_start_datetime TIMESTAMP NOT NULL ,
drug_era_end_date DATE NOT NULL , drug_era_end_datetime TIMESTAMP NOT NULL ,
drug_exposure_count INTEGER NULL , drug_exposure_count INTEGER NULL ,
gap_days INTEGER NULL gap_days INTEGER NULL
) )
; ;
@ -743,13 +743,13 @@ CREATE TABLE drug_era
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE dose_era CREATE TABLE dose_era
( (
dose_era_id BIGINT NOT NULL , dose_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL , person_id BIGINT NOT NULL ,
drug_concept_id INTEGER NOT NULL , drug_concept_id INTEGER NOT NULL ,
unit_concept_id INTEGER NOT NULL , unit_concept_id INTEGER NOT NULL ,
dose_value NUMERIC NOT NULL , dose_value NUMERIC NOT NULL ,
dose_era_start_date DATE NOT NULL , dose_era_start_datetime TIMESTAMP NOT NULL ,
dose_era_end_date DATE NOT NULL dose_era_end_datetime TIMESTAMP NOT NULL
) )
; ;
@ -757,11 +757,11 @@ CREATE TABLE dose_era
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE condition_era CREATE TABLE condition_era
( (
condition_era_id BIGINT NOT NULL , condition_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL , person_id BIGINT NOT NULL ,
condition_concept_id INTEGER NOT NULL , condition_concept_id INTEGER NOT NULL ,
condition_era_start_date DATE NOT NULL , condition_era_start_datetime TIMESTAMP NOT NULL ,
condition_era_end_date DATE NOT NULL , condition_era_end_datetime TIMESTAMP NOT NULL ,
condition_occurrence_count INTEGER NULL condition_occurrence_count INTEGER NULL
) )
; ;

50
Redshift/OMOP CDM redshift ddl.txt
View File

@ -63,7 +63,7 @@ CREATE TABLE vocabulary (
vocabulary_id VARCHAR(20) NOT NULL, vocabulary_id VARCHAR(20) NOT NULL,
vocabulary_name VARCHAR(255) NOT NULL, vocabulary_name VARCHAR(255) NOT NULL,
vocabulary_reference VARCHAR(255) NOT NULL, vocabulary_reference VARCHAR(255) NOT NULL,
vocabulary_version VARCHAR(255) NOT NULL, vocabulary_version VARCHAR(255) NULL,
vocabulary_concept_id INTEGER NOT NULL vocabulary_concept_id INTEGER NOT NULL
) )
DISTSTYLE ALL; DISTSTYLE ALL;
@ -122,10 +122,10 @@ DISTSTYLE ALL;
--HINT DISTRIBUTE ON RANDOM --HINT DISTRIBUTE ON RANDOM
CREATE TABLE concept_ancestor ( CREATE TABLE concept_ancestor (
ancestor_concept_id INTEGER NOT NULL, ancestor_concept_id INTEGER NOT NULL,
descendant_concept_id INTEGER NOT NULL, descendant_concept_id INTEGER NOT NULL,
min_levels_of_separation INTEGER NOT NULL, min_levels_of_separation INTEGER NOT NULL,
max_levels_of_separation INTEGER NOT NULL max_levels_of_separation INTEGER NOT NULL
) )
DISTSTYLE ALL; DISTSTYLE ALL;
@ -680,37 +680,37 @@ Standardized derived elements
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE drug_era ( CREATE TABLE drug_era (
drug_era_id BIGINT NOT NULL , drug_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL , person_id BIGINT NOT NULL ,
drug_concept_id INTEGER NOT NULL , drug_concept_id INTEGER NOT NULL ,
drug_era_start_date DATE NOT NULL , drug_era_start_datetime TIMESTAMP NOT NULL ,
drug_era_end_date DATE NOT NULL , drug_era_end_datetime TIMESTAMP NOT NULL ,
drug_exposure_count INTEGER NULL , drug_exposure_count INTEGER NULL ,
gap_days INTEGER NULL gap_days INTEGER NULL
) )
DISTKEY(person_id); DISTKEY(person_id);
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE dose_era ( CREATE TABLE dose_era (
dose_era_id BIGINT NOT NULL , dose_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL , person_id BIGINT NOT NULL ,
drug_concept_id INTEGER NOT NULL , drug_concept_id INTEGER NOT NULL ,
unit_concept_id INTEGER NOT NULL , unit_concept_id INTEGER NOT NULL ,
dose_value FLOAT NOT NULL , dose_value FLOAT NOT NULL ,
dose_era_start_date DATE NOT NULL , dose_era_start_datetime TIMESTAMP NOT NULL ,
dose_era_end_date DATE NOT NULL dose_era_end_datetime TIMESTAMP NOT NULL
) )
DISTKEY(person_id); DISTKEY(person_id);
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE condition_era ( CREATE TABLE condition_era (
condition_era_id BIGINT NOT NULL , condition_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL , person_id BIGINT NOT NULL ,
condition_concept_id INTEGER NOT NULL , condition_concept_id INTEGER NOT NULL ,
condition_era_start_date DATE NOT NULL , condition_era_start_datetime TIMESTAMP NOT NULL ,
condition_era_end_date DATE NOT NULL , condition_era_end_datetime TIMESTAMP NOT NULL ,
condition_occurrence_count INTEGER NULL condition_occurrence_count INTEGER NULL
) )
DISTKEY(person_id); DISTKEY(person_id);

42
Sql Server/OMOP CDM sql server ddl.txt
View File

@ -63,7 +63,7 @@ CREATE TABLE vocabulary (
vocabulary_id VARCHAR(20) NOT NULL, vocabulary_id VARCHAR(20) NOT NULL,
vocabulary_name VARCHAR(255) NOT NULL, vocabulary_name VARCHAR(255) NOT NULL,
vocabulary_reference VARCHAR(255) NOT NULL, vocabulary_reference VARCHAR(255) NOT NULL,
vocabulary_version VARCHAR(255) NOT NULL, vocabulary_version VARCHAR(255) NULL,
vocabulary_concept_id INTEGER NOT NULL vocabulary_concept_id INTEGER NOT NULL
) )
; ;
@ -704,13 +704,13 @@ Standardized derived elements
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE drug_era CREATE TABLE drug_era
( (
drug_era_id BIGINT NOT NULL , drug_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL , person_id BIGINT NOT NULL ,
drug_concept_id INTEGER NOT NULL , drug_concept_id INTEGER NOT NULL ,
drug_era_start_date DATE NOT NULL , drug_era_start_datetime DATETIME2 NOT NULL ,
drug_era_end_date DATE NOT NULL , drug_era_end_datetime DATETIME2 NOT NULL ,
drug_exposure_count INTEGER NULL , drug_exposure_count INTEGER NULL ,
gap_days INTEGER NULL gap_days INTEGER NULL
) )
; ;
@ -718,13 +718,13 @@ CREATE TABLE drug_era
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE dose_era CREATE TABLE dose_era
( (
dose_era_id BIGINT NOT NULL , dose_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL , person_id BIGINT NOT NULL ,
drug_concept_id INTEGER NOT NULL , drug_concept_id INTEGER NOT NULL ,
unit_concept_id INTEGER NOT NULL , unit_concept_id INTEGER NOT NULL ,
dose_value FLOAT NOT NULL , dose_value FLOAT NOT NULL ,
dose_era_start_date DATE NOT NULL , dose_era_start_datetime DATETIME2 NOT NULL ,
dose_era_end_date DATE NOT NULL dose_era_end_datetime DATETIME2 NOT NULL
) )
; ;
@ -732,11 +732,11 @@ CREATE TABLE dose_era
--HINT DISTRIBUTE_ON_KEY(person_id) --HINT DISTRIBUTE_ON_KEY(person_id)
CREATE TABLE condition_era CREATE TABLE condition_era
( (
condition_era_id BIGINT NOT NULL , condition_era_id BIGINT NOT NULL ,
person_id BIGINT NOT NULL , person_id BIGINT NOT NULL ,
condition_concept_id INTEGER NOT NULL , condition_concept_id INTEGER NOT NULL ,
condition_era_start_date DATE NOT NULL , condition_era_start_datetime DATETIME2 NOT NULL ,
condition_era_end_date DATE NOT NULL , condition_era_end_datetime DATETIME2 NOT NULL ,
condition_occurrence_count INTEGER NULL condition_occurrence_count INTEGER NULL
) )
; ;