added snowflake support
This commit is contained in:
ssuvorov-fls
parent
af1effdedc
commit
e1e010a3df
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@ -12,6 +12,6 @@ listSupportedVersions <- function() {
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#' @export
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#' @export
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listSupportedDialects <- function() {
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listSupportedDialects <- function() {
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supportedDialects <- c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark")
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supportedDialects <- c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake")
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return(supportedDialects)
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return(supportedDialects)
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}
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}
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@ -30,7 +30,7 @@
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writeDdl <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
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writeDdl <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
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# argument checks
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# argument checks
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark"))
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake"))
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stopifnot(cdmVersion %in% listSupportedVersions())
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stopifnot(cdmVersion %in% listSupportedVersions())
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stopifnot(is.character(cdmDatabaseSchema))
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stopifnot(is.character(cdmDatabaseSchema))
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@ -54,7 +54,7 @@ writeDdl <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema
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writePrimaryKeys <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
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writePrimaryKeys <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
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# argument checks
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# argument checks
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark"))
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake"))
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stopifnot(cdmVersion %in% listSupportedVersions())
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stopifnot(cdmVersion %in% listSupportedVersions())
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stopifnot(is.character(cdmDatabaseSchema))
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stopifnot(is.character(cdmDatabaseSchema))
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@ -78,7 +78,7 @@ writePrimaryKeys <- function(targetDialect, cdmVersion, outputfolder, cdmDatabas
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writeForeignKeys <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
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writeForeignKeys <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
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# argument checks
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# argument checks
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark"))
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake"))
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stopifnot(cdmVersion %in% listSupportedVersions())
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stopifnot(cdmVersion %in% listSupportedVersions())
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stopifnot(is.character(cdmDatabaseSchema))
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stopifnot(is.character(cdmDatabaseSchema))
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@ -102,7 +102,7 @@ writeForeignKeys <- function(targetDialect, cdmVersion, outputfolder, cdmDatabas
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writeIndex <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
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writeIndex <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
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# argument checks
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# argument checks
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark"))
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake"))
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stopifnot(cdmVersion %in% listSupportedVersions())
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stopifnot(cdmVersion %in% listSupportedVersions())
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stopifnot(is.character(cdmDatabaseSchema))
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stopifnot(is.character(cdmDatabaseSchema))
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@ -7,7 +7,7 @@ cdmVersion <- "5.4"
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supportedVersions <- CommonDataModel::listSupportedVersions()
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supportedVersions <- CommonDataModel::listSupportedVersions()
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for (cdmVersion in supportedVersions) {
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for (cdmVersion in supportedVersions) {
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for (targetDialect in c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark")) {
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for (targetDialect in c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake")) {
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CommonDataModel::writeDdl(targetDialect = targetDialect,
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CommonDataModel::writeDdl(targetDialect = targetDialect,
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cdmVersion = cdmVersion)
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cdmVersion = cdmVersion)
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@ -0,0 +1,158 @@
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ALTER TABLE PERSON ADD CONSTRAINT fpk_PERSON_gender_concept_id FOREIGN KEY (gender_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE PERSON ADD CONSTRAINT fpk_PERSON_race_concept_id FOREIGN KEY (race_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE PERSON ADD CONSTRAINT fpk_PERSON_ethnicity_concept_id FOREIGN KEY (ethnicity_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE PERSON ADD CONSTRAINT fpk_PERSON_location_id FOREIGN KEY (location_id) REFERENCES LOCATION (LOCATION_ID);
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ALTER TABLE PERSON ADD CONSTRAINT fpk_PERSON_provider_id FOREIGN KEY (provider_id) REFERENCES PROVIDER (PROVIDER_ID);
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ALTER TABLE PERSON ADD CONSTRAINT fpk_PERSON_care_site_id FOREIGN KEY (care_site_id) REFERENCES CARE_SITE (CARE_SITE_ID);
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ALTER TABLE PERSON ADD CONSTRAINT fpk_PERSON_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE PERSON ADD CONSTRAINT fpk_PERSON_race_source_concept_id FOREIGN KEY (race_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE PERSON ADD CONSTRAINT fpk_PERSON_ethnicity_source_concept_id FOREIGN KEY (ethnicity_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE OBSERVATION_PERIOD ADD CONSTRAINT fpk_OBSERVATION_PERIOD_person_id FOREIGN KEY (person_id) REFERENCES PERSON (PERSON_ID);
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ALTER TABLE OBSERVATION_PERIOD ADD CONSTRAINT fpk_OBSERVATION_PERIOD_period_type_concept_id FOREIGN KEY (period_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_person_id FOREIGN KEY (person_id) REFERENCES PERSON (PERSON_ID);
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ALTER TABLE VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_visit_concept_id FOREIGN KEY (visit_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_visit_type_concept_id FOREIGN KEY (visit_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_provider_id FOREIGN KEY (provider_id) REFERENCES PROVIDER (PROVIDER_ID);
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ALTER TABLE VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_care_site_id FOREIGN KEY (care_site_id) REFERENCES CARE_SITE (CARE_SITE_ID);
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ALTER TABLE VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_visit_source_concept_id FOREIGN KEY (visit_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_admitting_source_concept_id FOREIGN KEY (admitting_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_discharge_to_concept_id FOREIGN KEY (discharge_to_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_preceding_visit_occurrence_id FOREIGN KEY (preceding_visit_occurrence_id) REFERENCES VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_person_id FOREIGN KEY (person_id) REFERENCES PERSON (PERSON_ID);
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ALTER TABLE VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_visit_detail_concept_id FOREIGN KEY (visit_detail_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_visit_detail_type_concept_id FOREIGN KEY (visit_detail_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_provider_id FOREIGN KEY (provider_id) REFERENCES PROVIDER (PROVIDER_ID);
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ALTER TABLE VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_care_site_id FOREIGN KEY (care_site_id) REFERENCES CARE_SITE (CARE_SITE_ID);
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ALTER TABLE VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_visit_detail_source_concept_id FOREIGN KEY (visit_detail_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_admitting_source_concept_id FOREIGN KEY (admitting_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_discharge_to_concept_id FOREIGN KEY (discharge_to_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_preceding_visit_detail_id FOREIGN KEY (preceding_visit_detail_id) REFERENCES VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_visit_detail_parent_id FOREIGN KEY (visit_detail_parent_id) REFERENCES VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_person_id FOREIGN KEY (person_id) REFERENCES PERSON (PERSON_ID);
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ALTER TABLE CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_condition_type_concept_id FOREIGN KEY (condition_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_condition_status_concept_id FOREIGN KEY (condition_status_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_provider_id FOREIGN KEY (provider_id) REFERENCES PROVIDER (PROVIDER_ID);
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ALTER TABLE CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_condition_source_concept_id FOREIGN KEY (condition_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_person_id FOREIGN KEY (person_id) REFERENCES PERSON (PERSON_ID);
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ALTER TABLE DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_drug_type_concept_id FOREIGN KEY (drug_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_route_concept_id FOREIGN KEY (route_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_provider_id FOREIGN KEY (provider_id) REFERENCES PROVIDER (PROVIDER_ID);
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ALTER TABLE DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_drug_source_concept_id FOREIGN KEY (drug_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_person_id FOREIGN KEY (person_id) REFERENCES PERSON (PERSON_ID);
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ALTER TABLE PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_procedure_concept_id FOREIGN KEY (procedure_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_procedure_type_concept_id FOREIGN KEY (procedure_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_modifier_concept_id FOREIGN KEY (modifier_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_person_id FOREIGN KEY (person_id) REFERENCES PERSON (PERSON_ID);
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ALTER TABLE DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_concept_id FOREIGN KEY (device_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_type_concept_id FOREIGN KEY (device_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_provider_id FOREIGN KEY (provider_id) REFERENCES PROVIDER (PROVIDER_ID);
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ALTER TABLE DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_source_concept_id FOREIGN KEY (device_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_person_id FOREIGN KEY (person_id) REFERENCES PERSON (PERSON_ID);
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ALTER TABLE MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_concept_id FOREIGN KEY (measurement_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_type_concept_id FOREIGN KEY (measurement_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_operator_concept_id FOREIGN KEY (operator_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_provider_id FOREIGN KEY (provider_id) REFERENCES PROVIDER (PROVIDER_ID);
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ALTER TABLE MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_source_concept_id FOREIGN KEY (measurement_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_person_id FOREIGN KEY (person_id) REFERENCES PERSON (PERSON_ID);
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ALTER TABLE OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_observation_concept_id FOREIGN KEY (observation_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_observation_type_concept_id FOREIGN KEY (observation_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_qualifier_concept_id FOREIGN KEY (qualifier_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_provider_id FOREIGN KEY (provider_id) REFERENCES PROVIDER (PROVIDER_ID);
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ALTER TABLE OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_observation_source_concept_id FOREIGN KEY (observation_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE DEATH ADD CONSTRAINT fpk_DEATH_person_id FOREIGN KEY (person_id) REFERENCES PERSON (PERSON_ID);
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ALTER TABLE DEATH ADD CONSTRAINT fpk_DEATH_death_type_concept_id FOREIGN KEY (death_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE DEATH ADD CONSTRAINT fpk_DEATH_cause_concept_id FOREIGN KEY (cause_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE DEATH ADD CONSTRAINT fpk_DEATH_cause_source_concept_id FOREIGN KEY (cause_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE NOTE ADD CONSTRAINT fpk_NOTE_person_id FOREIGN KEY (person_id) REFERENCES PERSON (PERSON_ID);
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ALTER TABLE NOTE ADD CONSTRAINT fpk_NOTE_note_type_concept_id FOREIGN KEY (note_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE NOTE ADD CONSTRAINT fpk_NOTE_note_class_concept_id FOREIGN KEY (note_class_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE NOTE ADD CONSTRAINT fpk_NOTE_encoding_concept_id FOREIGN KEY (encoding_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE NOTE ADD CONSTRAINT fpk_NOTE_language_concept_id FOREIGN KEY (language_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE NOTE ADD CONSTRAINT fpk_NOTE_provider_id FOREIGN KEY (provider_id) REFERENCES PROVIDER (PROVIDER_ID);
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ALTER TABLE NOTE ADD CONSTRAINT fpk_NOTE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
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ALTER TABLE NOTE ADD CONSTRAINT fpk_NOTE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES VISIT_DETAIL (VISIT_DETAIL_ID);
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ALTER TABLE NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_section_concept_id FOREIGN KEY (section_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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ALTER TABLE NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_note_nlp_concept_id FOREIGN KEY (note_nlp_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
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||||||
|
ALTER TABLE NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_note_nlp_source_concept_id FOREIGN KEY (note_nlp_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_person_id FOREIGN KEY (person_id) REFERENCES PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_specimen_concept_id FOREIGN KEY (specimen_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_specimen_type_concept_id FOREIGN KEY (specimen_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_anatomic_site_concept_id FOREIGN KEY (anatomic_site_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_disease_status_concept_id FOREIGN KEY (disease_status_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_domain_concept_id_1 FOREIGN KEY (domain_concept_id_1) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_domain_concept_id_2 FOREIGN KEY (domain_concept_id_2) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_place_of_service_concept_id FOREIGN KEY (place_of_service_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_location_id FOREIGN KEY (location_id) REFERENCES LOCATION (LOCATION_ID);
|
||||||
|
ALTER TABLE PROVIDER ADD CONSTRAINT fpk_PROVIDER_specialty_concept_id FOREIGN KEY (specialty_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE PROVIDER ADD CONSTRAINT fpk_PROVIDER_care_site_id FOREIGN KEY (care_site_id) REFERENCES CARE_SITE (CARE_SITE_ID);
|
||||||
|
ALTER TABLE PROVIDER ADD CONSTRAINT fpk_PROVIDER_gender_concept_id FOREIGN KEY (gender_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE PROVIDER ADD CONSTRAINT fpk_PROVIDER_specialty_source_concept_id FOREIGN KEY (specialty_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE PROVIDER ADD CONSTRAINT fpk_PROVIDER_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_plan_period_id FOREIGN KEY (payer_plan_period_id) REFERENCES PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_person_id FOREIGN KEY (person_id) REFERENCES PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_concept_id FOREIGN KEY (payer_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_source_concept_id FOREIGN KEY (payer_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_plan_concept_id FOREIGN KEY (plan_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_plan_source_concept_id FOREIGN KEY (plan_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_sponsor_concept_id FOREIGN KEY (sponsor_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_sponsor_source_concept_id FOREIGN KEY (sponsor_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_stop_reason_concept_id FOREIGN KEY (stop_reason_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_stop_reason_source_concept_id FOREIGN KEY (stop_reason_source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE COST ADD CONSTRAINT fpk_COST_cost_domain_id FOREIGN KEY (cost_domain_id) REFERENCES DOMAIN (DOMAIN_ID);
|
||||||
|
ALTER TABLE COST ADD CONSTRAINT fpk_COST_cost_type_concept_id FOREIGN KEY (cost_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE COST ADD CONSTRAINT fpk_COST_currency_concept_id FOREIGN KEY (currency_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE COST ADD CONSTRAINT fpk_COST_revenue_code_concept_id FOREIGN KEY (revenue_code_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE COST ADD CONSTRAINT fpk_COST_drg_concept_id FOREIGN KEY (drg_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE DRUG_ERA ADD CONSTRAINT fpk_DRUG_ERA_person_id FOREIGN KEY (person_id) REFERENCES PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE DRUG_ERA ADD CONSTRAINT fpk_DRUG_ERA_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_person_id FOREIGN KEY (person_id) REFERENCES PERSON (PERSON_ID);
|
||||||
|
ALTER TABLE DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE METADATA ADD CONSTRAINT fpk_METADATA_metadata_concept_id FOREIGN KEY (metadata_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE METADATA ADD CONSTRAINT fpk_METADATA_metadata_type_concept_id FOREIGN KEY (metadata_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE METADATA ADD CONSTRAINT fpk_METADATA_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE CONCEPT ADD CONSTRAINT fpk_CONCEPT_domain_id FOREIGN KEY (domain_id) REFERENCES DOMAIN (DOMAIN_ID);
|
||||||
|
ALTER TABLE CONCEPT ADD CONSTRAINT fpk_CONCEPT_vocabulary_id FOREIGN KEY (vocabulary_id) REFERENCES VOCABULARY (VOCABULARY_ID);
|
||||||
|
ALTER TABLE CONCEPT ADD CONSTRAINT fpk_CONCEPT_concept_class_id FOREIGN KEY (concept_class_id) REFERENCES CONCEPT_CLASS (CONCEPT_CLASS_ID);
|
||||||
|
ALTER TABLE VOCABULARY ADD CONSTRAINT fpk_VOCABULARY_vocabulary_concept_id FOREIGN KEY (vocabulary_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE DOMAIN ADD CONSTRAINT fpk_DOMAIN_domain_concept_id FOREIGN KEY (domain_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE CONCEPT_CLASS ADD CONSTRAINT fpk_CONCEPT_CLASS_concept_class_concept_id FOREIGN KEY (concept_class_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE CONCEPT_RELATIONSHIP ADD CONSTRAINT fpk_CONCEPT_RELATIONSHIP_concept_id_1 FOREIGN KEY (concept_id_1) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE CONCEPT_RELATIONSHIP ADD CONSTRAINT fpk_CONCEPT_RELATIONSHIP_concept_id_2 FOREIGN KEY (concept_id_2) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE CONCEPT_RELATIONSHIP ADD CONSTRAINT fpk_CONCEPT_RELATIONSHIP_relationship_id FOREIGN KEY (relationship_id) REFERENCES RELATIONSHIP (RELATIONSHIP_ID);
|
||||||
|
ALTER TABLE RELATIONSHIP ADD CONSTRAINT fpk_RELATIONSHIP_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE CONCEPT_SYNONYM ADD CONSTRAINT fpk_CONCEPT_SYNONYM_concept_id FOREIGN KEY (concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE CONCEPT_SYNONYM ADD CONSTRAINT fpk_CONCEPT_SYNONYM_language_concept_id FOREIGN KEY (language_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE CONCEPT_ANCESTOR ADD CONSTRAINT fpk_CONCEPT_ANCESTOR_ancestor_concept_id FOREIGN KEY (ancestor_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE CONCEPT_ANCESTOR ADD CONSTRAINT fpk_CONCEPT_ANCESTOR_descendant_concept_id FOREIGN KEY (descendant_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE SOURCE_TO_CONCEPT_MAP ADD CONSTRAINT fpk_SOURCE_TO_CONCEPT_MAP_source_concept_id FOREIGN KEY (source_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE SOURCE_TO_CONCEPT_MAP ADD CONSTRAINT fpk_SOURCE_TO_CONCEPT_MAP_target_concept_id FOREIGN KEY (target_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE SOURCE_TO_CONCEPT_MAP ADD CONSTRAINT fpk_SOURCE_TO_CONCEPT_MAP_target_vocabulary_id FOREIGN KEY (target_vocabulary_id) REFERENCES VOCABULARY (VOCABULARY_ID);
|
||||||
|
ALTER TABLE DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_ingredient_concept_id FOREIGN KEY (ingredient_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_amount_unit_concept_id FOREIGN KEY (amount_unit_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_numerator_unit_concept_id FOREIGN KEY (numerator_unit_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_denominator_unit_concept_id FOREIGN KEY (denominator_unit_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_definition_type_concept_id FOREIGN KEY (definition_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_subject_concept_id FOREIGN KEY (subject_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
ALTER TABLE ATTRIBUTE_DEFINITION ADD CONSTRAINT fpk_ATTRIBUTE_DEFINITION_attribute_type_concept_id FOREIGN KEY (attribute_type_concept_id) REFERENCES CONCEPT (CONCEPT_ID);
|
||||||
|
|
@ -0,0 +1,475 @@
|
||||||
|
--USE DATABASE snowflake54;
|
||||||
|
|
||||||
|
--CREATE OR REPLACE SCHEMA cdm54;
|
||||||
|
|
||||||
|
--snowflake CDM DDL Specification for OMOP Common Data Model 5.4
|
||||||
|
|
||||||
|
CREATE TABLE PERSON (
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
gender_concept_id integer NOT NULL,
|
||||||
|
year_of_birth integer NOT NULL,
|
||||||
|
month_of_birth integer NULL,
|
||||||
|
day_of_birth integer NULL,
|
||||||
|
birth_datetime TIMESTAMP NULL,
|
||||||
|
race_concept_id integer NOT NULL,
|
||||||
|
ethnicity_concept_id integer NOT NULL,
|
||||||
|
location_id integer NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
care_site_id integer NULL,
|
||||||
|
person_source_value varchar(50) NULL,
|
||||||
|
gender_source_value varchar(50) NULL,
|
||||||
|
gender_source_concept_id integer NULL,
|
||||||
|
race_source_value varchar(50) NULL,
|
||||||
|
race_source_concept_id integer NULL,
|
||||||
|
ethnicity_source_value varchar(50) NULL,
|
||||||
|
ethnicity_source_concept_id integer NULL );
|
||||||
|
|
||||||
|
CREATE TABLE OBSERVATION_PERIOD (
|
||||||
|
observation_period_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
observation_period_start_date date NOT NULL,
|
||||||
|
observation_period_end_date date NOT NULL,
|
||||||
|
period_type_concept_id integer NOT NULL );
|
||||||
|
|
||||||
|
CREATE TABLE VISIT_OCCURRENCE (
|
||||||
|
visit_occurrence_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
visit_concept_id integer NOT NULL,
|
||||||
|
visit_start_date date NOT NULL,
|
||||||
|
visit_start_datetime TIMESTAMP NULL,
|
||||||
|
visit_end_date date NOT NULL,
|
||||||
|
visit_end_datetime TIMESTAMP NULL,
|
||||||
|
visit_type_concept_id Integer NOT NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
care_site_id integer NULL,
|
||||||
|
visit_source_value varchar(50) NULL,
|
||||||
|
visit_source_concept_id integer NULL,
|
||||||
|
admitting_source_concept_id integer NULL,
|
||||||
|
admitting_source_value varchar(50) NULL,
|
||||||
|
discharge_to_concept_id integer NULL,
|
||||||
|
discharge_to_source_value varchar(50) NULL,
|
||||||
|
preceding_visit_occurrence_id integer NULL );
|
||||||
|
|
||||||
|
CREATE TABLE VISIT_DETAIL (
|
||||||
|
visit_detail_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
visit_detail_concept_id integer NOT NULL,
|
||||||
|
visit_detail_start_date date NOT NULL,
|
||||||
|
visit_detail_start_datetime TIMESTAMP NULL,
|
||||||
|
visit_detail_end_date date NOT NULL,
|
||||||
|
visit_detail_end_datetime TIMESTAMP NULL,
|
||||||
|
visit_detail_type_concept_id integer NOT NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
care_site_id integer NULL,
|
||||||
|
visit_detail_source_value varchar(50) NULL,
|
||||||
|
visit_detail_source_concept_id Integer NULL,
|
||||||
|
admitting_source_value Varchar(50) NULL,
|
||||||
|
admitting_source_concept_id Integer NULL,
|
||||||
|
discharge_to_source_value Varchar(50) NULL,
|
||||||
|
discharge_to_concept_id integer NULL,
|
||||||
|
preceding_visit_detail_id integer NULL,
|
||||||
|
visit_detail_parent_id integer NULL,
|
||||||
|
visit_occurrence_id integer NOT NULL );
|
||||||
|
|
||||||
|
CREATE TABLE CONDITION_OCCURRENCE (
|
||||||
|
condition_occurrence_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
condition_concept_id integer NOT NULL,
|
||||||
|
condition_start_date date NOT NULL,
|
||||||
|
condition_start_datetime TIMESTAMP NULL,
|
||||||
|
condition_end_date date NULL,
|
||||||
|
condition_end_datetime TIMESTAMP NULL,
|
||||||
|
condition_type_concept_id integer NOT NULL,
|
||||||
|
condition_status_concept_id integer NULL,
|
||||||
|
stop_reason varchar(20) NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
condition_source_value varchar(50) NULL,
|
||||||
|
condition_source_concept_id integer NULL,
|
||||||
|
condition_status_source_value varchar(50) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE DRUG_EXPOSURE (
|
||||||
|
drug_exposure_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
drug_concept_id integer NOT NULL,
|
||||||
|
drug_exposure_start_date date NOT NULL,
|
||||||
|
drug_exposure_start_datetime TIMESTAMP NULL,
|
||||||
|
drug_exposure_end_date date NOT NULL,
|
||||||
|
drug_exposure_end_datetime TIMESTAMP NULL,
|
||||||
|
verbatim_end_date date NULL,
|
||||||
|
drug_type_concept_id integer NOT NULL,
|
||||||
|
stop_reason varchar(20) NULL,
|
||||||
|
refills integer NULL,
|
||||||
|
quantity NUMERIC NULL,
|
||||||
|
days_supply integer NULL,
|
||||||
|
sig TEXT NULL,
|
||||||
|
route_concept_id integer NULL,
|
||||||
|
lot_number varchar(50) NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
drug_source_value varchar(50) NULL,
|
||||||
|
drug_source_concept_id integer NULL,
|
||||||
|
route_source_value varchar(50) NULL,
|
||||||
|
dose_unit_source_value varchar(50) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE PROCEDURE_OCCURRENCE (
|
||||||
|
procedure_occurrence_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
procedure_concept_id integer NOT NULL,
|
||||||
|
procedure_date date NOT NULL,
|
||||||
|
procedure_datetime TIMESTAMP NULL,
|
||||||
|
procedure_type_concept_id integer NOT NULL,
|
||||||
|
modifier_concept_id integer NULL,
|
||||||
|
quantity integer NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
procedure_source_value varchar(50) NULL,
|
||||||
|
procedure_source_concept_id integer NULL,
|
||||||
|
modifier_source_value varchar(50) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE DEVICE_EXPOSURE (
|
||||||
|
device_exposure_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
device_concept_id integer NOT NULL,
|
||||||
|
device_exposure_start_date date NOT NULL,
|
||||||
|
device_exposure_start_datetime TIMESTAMP NULL,
|
||||||
|
device_exposure_end_date date NULL,
|
||||||
|
device_exposure_end_datetime TIMESTAMP NULL,
|
||||||
|
device_type_concept_id integer NOT NULL,
|
||||||
|
unique_device_id varchar(50) NULL,
|
||||||
|
quantity integer NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
device_source_value varchar(50) NULL,
|
||||||
|
device_source_concept_id integer NULL );
|
||||||
|
|
||||||
|
CREATE TABLE MEASUREMENT (
|
||||||
|
measurement_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
measurement_concept_id integer NOT NULL,
|
||||||
|
measurement_date date NOT NULL,
|
||||||
|
measurement_datetime TIMESTAMP NULL,
|
||||||
|
-- measurement_time varchar(10) NULL,
|
||||||
|
measurement_type_concept_id integer NOT NULL,
|
||||||
|
operator_concept_id integer NULL,
|
||||||
|
value_as_number NUMERIC NULL,
|
||||||
|
value_as_concept_id integer NULL,
|
||||||
|
unit_concept_id integer NULL,
|
||||||
|
range_low NUMERIC NULL,
|
||||||
|
range_high NUMERIC NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
measurement_source_value varchar(50) NULL,
|
||||||
|
measurement_source_concept_id integer NULL,
|
||||||
|
unit_source_value varchar(50) NULL,
|
||||||
|
value_source_value varchar(50) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE OBSERVATION (
|
||||||
|
observation_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
observation_concept_id integer NOT NULL,
|
||||||
|
observation_date date NOT NULL,
|
||||||
|
observation_datetime TIMESTAMP NULL,
|
||||||
|
observation_type_concept_id integer NOT NULL,
|
||||||
|
value_as_number NUMERIC NULL,
|
||||||
|
value_as_string varchar(60) NULL,
|
||||||
|
value_as_concept_id Integer NULL,
|
||||||
|
qualifier_concept_id integer NULL,
|
||||||
|
unit_concept_id integer NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
observation_source_value varchar(50) NULL,
|
||||||
|
observation_source_concept_id integer NULL,
|
||||||
|
unit_source_value varchar(50) NULL,
|
||||||
|
qualifier_source_value varchar(50) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE DEATH (
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
death_date date NOT NULL,
|
||||||
|
death_datetime TIMESTAMP NULL,
|
||||||
|
death_type_concept_id integer NULL,
|
||||||
|
cause_concept_id integer NULL,
|
||||||
|
cause_source_value varchar(50) NULL,
|
||||||
|
cause_source_concept_id integer NULL );
|
||||||
|
|
||||||
|
CREATE TABLE NOTE (
|
||||||
|
note_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
note_date date NOT NULL,
|
||||||
|
note_datetime TIMESTAMP NULL,
|
||||||
|
note_type_concept_id integer NOT NULL,
|
||||||
|
note_class_concept_id integer NOT NULL,
|
||||||
|
note_title varchar(250) NULL,
|
||||||
|
note_text TEXT NOT NULL,
|
||||||
|
encoding_concept_id integer NOT NULL,
|
||||||
|
language_concept_id integer NOT NULL,
|
||||||
|
provider_id integer NULL,
|
||||||
|
visit_occurrence_id integer NULL,
|
||||||
|
visit_detail_id integer NULL,
|
||||||
|
note_source_value varchar(50) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE NOTE_NLP (
|
||||||
|
note_nlp_id integer NOT NULL,
|
||||||
|
note_id integer NOT NULL,
|
||||||
|
section_concept_id integer NULL,
|
||||||
|
snippet varchar(250) NULL,
|
||||||
|
"offset" varchar(50) NULL,
|
||||||
|
lexical_variant varchar(250) NOT NULL,
|
||||||
|
note_nlp_concept_id integer NULL,
|
||||||
|
note_nlp_source_concept_id integer NULL,
|
||||||
|
nlp_system varchar(250) NULL,
|
||||||
|
nlp_date date NOT NULL,
|
||||||
|
nlp_datetime TIMESTAMP NULL,
|
||||||
|
term_exists varchar(1) NULL,
|
||||||
|
term_temporal varchar(50) NULL,
|
||||||
|
term_modifiers varchar(2000) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE SPECIMEN (
|
||||||
|
specimen_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
specimen_concept_id integer NOT NULL,
|
||||||
|
specimen_type_concept_id integer NOT NULL,
|
||||||
|
specimen_date date NOT NULL,
|
||||||
|
specimen_datetime TIMESTAMP NULL,
|
||||||
|
quantity NUMERIC NULL,
|
||||||
|
unit_concept_id integer NULL,
|
||||||
|
anatomic_site_concept_id integer NULL,
|
||||||
|
disease_status_concept_id integer NULL,
|
||||||
|
specimen_source_id varchar(50) NULL,
|
||||||
|
specimen_source_value varchar(50) NULL,
|
||||||
|
unit_source_value varchar(50) NULL,
|
||||||
|
anatomic_site_source_value varchar(50) NULL,
|
||||||
|
disease_status_source_value varchar(50) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE FACT_RELATIONSHIP (
|
||||||
|
domain_concept_id_1 integer NOT NULL,
|
||||||
|
fact_id_1 integer NOT NULL,
|
||||||
|
domain_concept_id_2 integer NOT NULL,
|
||||||
|
fact_id_2 integer NOT NULL,
|
||||||
|
relationship_concept_id integer NOT NULL );
|
||||||
|
|
||||||
|
CREATE TABLE LOCATION (
|
||||||
|
location_id integer NOT NULL,
|
||||||
|
address_1 varchar(50) NULL,
|
||||||
|
address_2 varchar(50) NULL,
|
||||||
|
city varchar(50) NULL,
|
||||||
|
state varchar(2) NULL,
|
||||||
|
zip varchar(9) NULL,
|
||||||
|
county varchar(20) NULL,
|
||||||
|
location_source_value varchar(50) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE CARE_SITE (
|
||||||
|
care_site_id integer NOT NULL,
|
||||||
|
care_site_name varchar(255) NULL,
|
||||||
|
place_of_service_concept_id integer NULL,
|
||||||
|
location_id integer NULL,
|
||||||
|
care_site_source_value varchar(50) NULL,
|
||||||
|
place_of_service_source_value varchar(50) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE PROVIDER (
|
||||||
|
provider_id integer NOT NULL,
|
||||||
|
provider_name varchar(255) NULL,
|
||||||
|
npi varchar(20) NULL,
|
||||||
|
dea varchar(20) NULL,
|
||||||
|
specialty_concept_id integer NULL,
|
||||||
|
care_site_id integer NULL,
|
||||||
|
year_of_birth integer NULL,
|
||||||
|
gender_concept_id integer NULL,
|
||||||
|
provider_source_value varchar(50) NULL,
|
||||||
|
specialty_source_value varchar(50) NULL,
|
||||||
|
specialty_source_concept_id integer NULL,
|
||||||
|
gender_source_value varchar(50) NULL,
|
||||||
|
gender_source_concept_id integer NULL );
|
||||||
|
|
||||||
|
CREATE TABLE PAYER_PLAN_PERIOD (
|
||||||
|
payer_plan_period_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
payer_plan_period_start_date date NOT NULL,
|
||||||
|
payer_plan_period_end_date date NOT NULL,
|
||||||
|
payer_concept_id integer NULL,
|
||||||
|
payer_source_value varchar(50) NULL,
|
||||||
|
payer_source_concept_id integer NULL,
|
||||||
|
plan_concept_id integer NULL,
|
||||||
|
plan_source_value varchar(50) NULL,
|
||||||
|
plan_source_concept_id integer NULL,
|
||||||
|
sponsor_concept_id integer NULL,
|
||||||
|
sponsor_source_value varchar(50) NULL,
|
||||||
|
sponsor_source_concept_id integer NULL,
|
||||||
|
family_source_value varchar(50) NULL,
|
||||||
|
stop_reason_concept_id integer NULL,
|
||||||
|
stop_reason_source_value varchar(50) NULL,
|
||||||
|
stop_reason_source_concept_id integer NULL );
|
||||||
|
|
||||||
|
CREATE TABLE COST (
|
||||||
|
cost_id integer NOT NULL,
|
||||||
|
cost_event_id integer NOT NULL,
|
||||||
|
cost_domain_id varchar(20) NOT NULL,
|
||||||
|
cost_type_concept_id integer NOT NULL,
|
||||||
|
currency_concept_id integer NULL,
|
||||||
|
total_charge NUMERIC NULL,
|
||||||
|
total_cost NUMERIC NULL,
|
||||||
|
total_paid NUMERIC NULL,
|
||||||
|
paid_by_payer NUMERIC NULL,
|
||||||
|
paid_by_patient NUMERIC NULL,
|
||||||
|
paid_patient_copay NUMERIC NULL,
|
||||||
|
paid_patient_coinsurance NUMERIC NULL,
|
||||||
|
paid_patient_deductible NUMERIC NULL,
|
||||||
|
paid_by_primary NUMERIC NULL,
|
||||||
|
paid_ingredient_cost NUMERIC NULL,
|
||||||
|
paid_dispensing_fee NUMERIC NULL,
|
||||||
|
payer_plan_period_id integer NULL,
|
||||||
|
amount_allowed NUMERIC NULL,
|
||||||
|
revenue_code_concept_id integer NULL,
|
||||||
|
-- revenue_code_source_value varchar(50) NULL,
|
||||||
|
drg_concept_id integer NULL,
|
||||||
|
drg_source_value varchar(3) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE DRUG_ERA (
|
||||||
|
drug_era_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
drug_concept_id integer NOT NULL,
|
||||||
|
drug_era_start_date TIMESTAMP NOT NULL,
|
||||||
|
drug_era_end_date TIMESTAMP NOT NULL,
|
||||||
|
drug_exposure_count integer NULL,
|
||||||
|
gap_days integer NULL );
|
||||||
|
|
||||||
|
CREATE TABLE DOSE_ERA (
|
||||||
|
dose_era_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
drug_concept_id integer NOT NULL,
|
||||||
|
unit_concept_id integer NOT NULL,
|
||||||
|
dose_value NUMERIC NOT NULL,
|
||||||
|
dose_era_start_date TIMESTAMP NOT NULL,
|
||||||
|
dose_era_end_date TIMESTAMP NOT NULL );
|
||||||
|
|
||||||
|
CREATE TABLE CONDITION_ERA (
|
||||||
|
condition_era_id integer NOT NULL,
|
||||||
|
person_id integer NOT NULL,
|
||||||
|
condition_concept_id integer NOT NULL,
|
||||||
|
condition_era_start_date TIMESTAMP NOT NULL,
|
||||||
|
condition_era_end_date TIMESTAMP NOT NULL,
|
||||||
|
condition_occurrence_count integer NULL );
|
||||||
|
|
||||||
|
CREATE TABLE METADATA (
|
||||||
|
metadata_concept_id integer NOT NULL,
|
||||||
|
metadata_type_concept_id integer NOT NULL,
|
||||||
|
name varchar(250) NOT NULL,
|
||||||
|
value_as_string varchar(250) NULL,
|
||||||
|
value_as_concept_id integer NULL,
|
||||||
|
metadata_date date NULL,
|
||||||
|
metadata_datetime TIMESTAMP NULL );
|
||||||
|
|
||||||
|
CREATE TABLE CDM_SOURCE (
|
||||||
|
cdm_source_name varchar(255) NOT NULL,
|
||||||
|
cdm_source_abbreviation varchar(25) NULL,
|
||||||
|
cdm_holder varchar(255) NULL,
|
||||||
|
source_description TEXT NULL,
|
||||||
|
source_documentation_reference varchar(255) NULL,
|
||||||
|
cdm_etl_reference varchar(255) NULL,
|
||||||
|
source_release_date date NULL,
|
||||||
|
cdm_release_date date NULL,
|
||||||
|
cdm_version varchar(10) NULL,
|
||||||
|
vocabulary_version varchar(20) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE CONCEPT (
|
||||||
|
concept_id integer NOT NULL,
|
||||||
|
concept_name varchar(255) NOT NULL,
|
||||||
|
domain_id varchar(20) NOT NULL,
|
||||||
|
vocabulary_id varchar(20) NOT NULL,
|
||||||
|
concept_class_id varchar(20) NOT NULL,
|
||||||
|
standard_concept varchar(1) NULL,
|
||||||
|
concept_code varchar(50) NOT NULL,
|
||||||
|
valid_start_date date NOT NULL,
|
||||||
|
valid_end_date date NOT NULL,
|
||||||
|
invalid_reason varchar(1) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE VOCABULARY (
|
||||||
|
vocabulary_id varchar(20) NOT NULL,
|
||||||
|
vocabulary_name varchar(255) NOT NULL,
|
||||||
|
vocabulary_reference varchar(255) NOT NULL,
|
||||||
|
vocabulary_version varchar(255) NULL,
|
||||||
|
vocabulary_concept_id integer NOT NULL );
|
||||||
|
|
||||||
|
CREATE TABLE DOMAIN (
|
||||||
|
domain_id varchar(20) NOT NULL,
|
||||||
|
domain_name varchar(255) NOT NULL,
|
||||||
|
domain_concept_id integer NOT NULL );
|
||||||
|
|
||||||
|
CREATE TABLE CONCEPT_CLASS (
|
||||||
|
concept_class_id varchar(20) NOT NULL,
|
||||||
|
concept_class_name varchar(255) NOT NULL,
|
||||||
|
concept_class_concept_id integer NOT NULL );
|
||||||
|
|
||||||
|
CREATE TABLE CONCEPT_RELATIONSHIP (
|
||||||
|
concept_id_1 integer NOT NULL,
|
||||||
|
concept_id_2 integer NOT NULL,
|
||||||
|
relationship_id varchar(20) NOT NULL,
|
||||||
|
valid_start_date date NOT NULL,
|
||||||
|
valid_end_date date NOT NULL,
|
||||||
|
invalid_reason varchar(1) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE RELATIONSHIP (
|
||||||
|
relationship_id varchar(20) NOT NULL,
|
||||||
|
relationship_name varchar(255) NOT NULL,
|
||||||
|
is_hierarchical varchar(1) NOT NULL,
|
||||||
|
defines_ancestry varchar(1) NOT NULL,
|
||||||
|
reverse_relationship_id varchar(20) NOT NULL,
|
||||||
|
relationship_concept_id integer NOT NULL );
|
||||||
|
|
||||||
|
CREATE TABLE CONCEPT_SYNONYM (
|
||||||
|
concept_id integer NOT NULL,
|
||||||
|
concept_synonym_name varchar(1000) NOT NULL,
|
||||||
|
language_concept_id integer NOT NULL );
|
||||||
|
|
||||||
|
CREATE TABLE CONCEPT_ANCESTOR (
|
||||||
|
ancestor_concept_id integer NOT NULL,
|
||||||
|
descendant_concept_id integer NOT NULL,
|
||||||
|
min_levels_of_separation integer NOT NULL,
|
||||||
|
max_levels_of_separation integer NOT NULL );
|
||||||
|
|
||||||
|
CREATE TABLE SOURCE_TO_CONCEPT_MAP (
|
||||||
|
source_code varchar(50) NOT NULL,
|
||||||
|
source_concept_id integer NOT NULL,
|
||||||
|
source_vocabulary_id varchar(20) NOT NULL,
|
||||||
|
source_code_description varchar(255) NULL,
|
||||||
|
target_concept_id integer NOT NULL,
|
||||||
|
target_vocabulary_id varchar(20) NOT NULL,
|
||||||
|
valid_start_date date NOT NULL,
|
||||||
|
valid_end_date date NOT NULL,
|
||||||
|
invalid_reason varchar(1) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE DRUG_STRENGTH (
|
||||||
|
drug_concept_id integer NOT NULL,
|
||||||
|
ingredient_concept_id integer NOT NULL,
|
||||||
|
amount_value NUMERIC NULL,
|
||||||
|
amount_unit_concept_id integer NULL,
|
||||||
|
numerator_value NUMERIC NULL,
|
||||||
|
numerator_unit_concept_id integer NULL,
|
||||||
|
denominator_value NUMERIC NULL,
|
||||||
|
denominator_unit_concept_id integer NULL,
|
||||||
|
box_size integer NULL,
|
||||||
|
valid_start_date date NOT NULL,
|
||||||
|
valid_end_date date NOT NULL,
|
||||||
|
invalid_reason varchar(1) NULL );
|
||||||
|
|
||||||
|
CREATE TABLE COHORT_DEFINITION (
|
||||||
|
cohort_definition_id integer NOT NULL,
|
||||||
|
cohort_definition_name varchar(255) NOT NULL,
|
||||||
|
cohort_definition_description TEXT NULL,
|
||||||
|
definition_type_concept_id integer NOT NULL,
|
||||||
|
cohort_definition_syntax TEXT NULL,
|
||||||
|
subject_concept_id integer NOT NULL,
|
||||||
|
cohort_initiation_date date NULL );
|
||||||
|
|
||||||
|
CREATE TABLE ATTRIBUTE_DEFINITION (
|
||||||
|
attribute_definition_id integer NOT NULL,
|
||||||
|
attribute_name varchar(255) NOT NULL,
|
||||||
|
attribute_description TEXT NULL,
|
||||||
|
attribute_type_concept_id integer NOT NULL,
|
||||||
|
attribute_syntax TEXT NULL );
|
||||||
|
|
@ -0,0 +1 @@
|
||||||
|
-- snowflake does not support indexes
|
||||||
|
|
@ -0,0 +1,26 @@
|
||||||
|
ALTER TABLE PERSON ADD CONSTRAINT xpk_PERSON PRIMARY KEY (person_id);
|
||||||
|
ALTER TABLE OBSERVATION_PERIOD ADD CONSTRAINT xpk_OBSERVATION_PERIOD PRIMARY KEY (observation_period_id);
|
||||||
|
ALTER TABLE VISIT_OCCURRENCE ADD CONSTRAINT xpk_VISIT_OCCURRENCE PRIMARY KEY (visit_occurrence_id);
|
||||||
|
ALTER TABLE VISIT_DETAIL ADD CONSTRAINT xpk_VISIT_DETAIL PRIMARY KEY (visit_detail_id);
|
||||||
|
ALTER TABLE CONDITION_OCCURRENCE ADD CONSTRAINT xpk_CONDITION_OCCURRENCE PRIMARY KEY (condition_occurrence_id);
|
||||||
|
ALTER TABLE DRUG_EXPOSURE ADD CONSTRAINT xpk_DRUG_EXPOSURE PRIMARY KEY (drug_exposure_id);
|
||||||
|
ALTER TABLE PROCEDURE_OCCURRENCE ADD CONSTRAINT xpk_PROCEDURE_OCCURRENCE PRIMARY KEY (procedure_occurrence_id);
|
||||||
|
ALTER TABLE DEVICE_EXPOSURE ADD CONSTRAINT xpk_DEVICE_EXPOSURE PRIMARY KEY (device_exposure_id);
|
||||||
|
ALTER TABLE MEASUREMENT ADD CONSTRAINT xpk_MEASUREMENT PRIMARY KEY (measurement_id);
|
||||||
|
ALTER TABLE OBSERVATION ADD CONSTRAINT xpk_OBSERVATION PRIMARY KEY (observation_id);
|
||||||
|
ALTER TABLE NOTE ADD CONSTRAINT xpk_NOTE PRIMARY KEY (note_id);
|
||||||
|
ALTER TABLE NOTE_NLP ADD CONSTRAINT xpk_NOTE_NLP PRIMARY KEY (note_nlp_id);
|
||||||
|
ALTER TABLE SPECIMEN ADD CONSTRAINT xpk_SPECIMEN PRIMARY KEY (specimen_id);
|
||||||
|
ALTER TABLE LOCATION ADD CONSTRAINT xpk_LOCATION PRIMARY KEY (location_id);
|
||||||
|
ALTER TABLE CARE_SITE ADD CONSTRAINT xpk_CARE_SITE PRIMARY KEY (care_site_id);
|
||||||
|
ALTER TABLE PROVIDER ADD CONSTRAINT xpk_PROVIDER PRIMARY KEY (provider_id);
|
||||||
|
ALTER TABLE PAYER_PLAN_PERIOD ADD CONSTRAINT xpk_PAYER_PLAN_PERIOD PRIMARY KEY (payer_plan_period_id);
|
||||||
|
ALTER TABLE COST ADD CONSTRAINT xpk_COST PRIMARY KEY (cost_id);
|
||||||
|
ALTER TABLE DRUG_ERA ADD CONSTRAINT xpk_DRUG_ERA PRIMARY KEY (drug_era_id);
|
||||||
|
ALTER TABLE DOSE_ERA ADD CONSTRAINT xpk_DOSE_ERA PRIMARY KEY (dose_era_id);
|
||||||
|
ALTER TABLE CONDITION_ERA ADD CONSTRAINT xpk_CONDITION_ERA PRIMARY KEY (condition_era_id);
|
||||||
|
ALTER TABLE CONCEPT ADD CONSTRAINT xpk_CONCEPT PRIMARY KEY (concept_id);
|
||||||
|
ALTER TABLE VOCABULARY ADD CONSTRAINT xpk_VOCABULARY PRIMARY KEY (vocabulary_id);
|
||||||
|
ALTER TABLE DOMAIN ADD CONSTRAINT xpk_DOMAIN PRIMARY KEY (domain_id);
|
||||||
|
ALTER TABLE CONCEPT_CLASS ADD CONSTRAINT xpk_CONCEPT_CLASS PRIMARY KEY (concept_class_id);
|
||||||
|
ALTER TABLE RELATIONSHIP ADD CONSTRAINT xpk_RELATIONSHIP PRIMARY KEY (relationship_id);
|
||||||
Loading…
Reference in New Issue