Merge remote-tracking branch 'remotes/origin/snowflake_support' into synapse
This commit is contained in:
alex-odysseus
commit
eab766eab8
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@ -12,6 +12,6 @@ listSupportedVersions <- function() {
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#' @export
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listSupportedDialects <- function() {
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supportedDialects <- c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark")
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supportedDialects <- c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake")
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return(supportedDialects)
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}
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@ -30,7 +30,7 @@
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writeDdl <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
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# argument checks
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark"))
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake"))
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stopifnot(cdmVersion %in% listSupportedVersions())
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stopifnot(is.character(cdmDatabaseSchema))
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@ -54,7 +54,7 @@ writeDdl <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema
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writePrimaryKeys <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
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# argument checks
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark"))
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake"))
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stopifnot(cdmVersion %in% listSupportedVersions())
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stopifnot(is.character(cdmDatabaseSchema))
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@ -78,7 +78,7 @@ writePrimaryKeys <- function(targetDialect, cdmVersion, outputfolder, cdmDatabas
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writeForeignKeys <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
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# argument checks
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark"))
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake"))
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stopifnot(cdmVersion %in% listSupportedVersions())
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stopifnot(is.character(cdmDatabaseSchema))
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@ -102,7 +102,7 @@ writeForeignKeys <- function(targetDialect, cdmVersion, outputfolder, cdmDatabas
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writeIndex <- function(targetDialect, cdmVersion, outputfolder, cdmDatabaseSchema = "@cdmDatabaseSchema") {
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# argument checks
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark"))
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stopifnot(targetDialect %in% c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake"))
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stopifnot(cdmVersion %in% listSupportedVersions())
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stopifnot(is.character(cdmDatabaseSchema))
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@ -13,7 +13,7 @@
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||||
<title>background.knit</title>
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||||
|
||||
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
|
|
@ -63,6 +63,7 @@ if (window.hljs) {
|
|||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
|
@ -88,6 +89,9 @@ button.code-folding-btn:focus {
|
|||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
|
|
@ -312,7 +316,7 @@ div.tocify {
|
|||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
|
|
@ -328,7 +332,7 @@ div.tocify {
|
|||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
||||
|
|
@ -348,7 +352,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-list-alt"></span>
|
||||
|
||||
Conventions
|
||||
|
|
@ -368,7 +372,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
|
@ -386,7 +390,7 @@ div.tocify {
|
|||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
|
|
@ -399,19 +403,22 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -421,7 +428,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
|
@ -441,7 +448,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
|
@ -449,6 +456,9 @@ div.tocify {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -13,7 +13,7 @@
|
|||
|
||||
<title>CDM v3</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
|
|
@ -63,6 +63,7 @@ if (window.hljs) {
|
|||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
|
@ -88,6 +89,9 @@ button.code-folding-btn:focus {
|
|||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
|
|
@ -312,7 +316,7 @@ div.tocify {
|
|||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
|
|
@ -328,7 +332,7 @@ div.tocify {
|
|||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
||||
|
|
@ -348,7 +352,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-list-alt"></span>
|
||||
|
||||
Conventions
|
||||
|
|
@ -368,7 +372,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
|
@ -386,7 +390,7 @@ div.tocify {
|
|||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
|
|
@ -399,19 +403,22 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -421,7 +428,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
|
@ -441,7 +448,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
|
@ -449,6 +456,9 @@ div.tocify {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -406,11 +406,14 @@ div.tocify {
|
|||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
|
|
@ -453,6 +456,9 @@ div.tocify {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -13,7 +13,7 @@
|
|||
|
||||
<title>OMOP CDM v5.3.1</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
|
|
@ -63,6 +63,7 @@ if (window.hljs) {
|
|||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
|
@ -88,6 +89,9 @@ button.code-folding-btn:focus {
|
|||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
|
|
@ -312,7 +316,7 @@ div.tocify {
|
|||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
|
|
@ -328,7 +332,7 @@ div.tocify {
|
|||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
||||
|
|
@ -348,7 +352,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-list-alt"></span>
|
||||
|
||||
Conventions
|
||||
|
|
@ -368,7 +372,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
|
@ -386,7 +390,7 @@ div.tocify {
|
|||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
|
|
@ -399,19 +403,22 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -421,7 +428,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
|
@ -441,7 +448,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
|
@ -449,6 +456,9 @@ div.tocify {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -406,11 +406,14 @@ div.tocify {
|
|||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
|
|
@ -453,6 +456,9 @@ div.tocify {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -13,7 +13,7 @@
|
|||
|
||||
<title>Changes by Table</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
|
|
@ -63,6 +63,7 @@ if (window.hljs) {
|
|||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
|
@ -88,6 +89,9 @@ button.code-folding-btn:focus {
|
|||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
|
|
@ -312,7 +316,7 @@ div.tocify {
|
|||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
|
|
@ -328,7 +332,7 @@ div.tocify {
|
|||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
||||
|
|
@ -348,7 +352,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-list-alt"></span>
|
||||
|
||||
Conventions
|
||||
|
|
@ -368,7 +372,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
|
@ -386,7 +390,7 @@ div.tocify {
|
|||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
|
|
@ -399,19 +403,22 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -421,7 +428,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
|
@ -441,7 +448,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
|
@ -449,6 +456,9 @@ div.tocify {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -406,11 +406,14 @@ div.tocify {
|
|||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
|
|
@ -453,6 +456,9 @@ div.tocify {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -0,0 +1,472 @@
|
|||
<!DOCTYPE html>
|
||||
|
||||
<html>
|
||||
|
||||
<head>
|
||||
|
||||
<meta charset="utf-8" />
|
||||
<meta name="generator" content="pandoc" />
|
||||
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
|
||||
|
||||
|
||||
|
||||
|
||||
<title>cdmDecisionTree.knit</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
|
||||
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
|
||||
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
|
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<style>h1 {font-size: 34px;}
|
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h1.title {font-size: 38px;}
|
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h2 {font-size: 30px;}
|
||||
h3 {font-size: 24px;}
|
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h4 {font-size: 18px;}
|
||||
h5 {font-size: 16px;}
|
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h6 {font-size: 12px;}
|
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code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
|
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pre:not([class]) { background-color: white }</style>
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<script src="site_libs/navigation-1.1/tabsets.js"></script>
|
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<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
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<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
|
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<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
|
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<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />
|
||||
<link rel='shortcut icon' type='image/x-icon' href='favicon.ico' />
|
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|
||||
<style type="text/css">
|
||||
code{white-space: pre-wrap;}
|
||||
span.smallcaps{font-variant: small-caps;}
|
||||
span.underline{text-decoration: underline;}
|
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div.column{display: inline-block; vertical-align: top; width: 50%;}
|
||||
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
|
||||
ul.task-list{list-style: none;}
|
||||
</style>
|
||||
|
||||
<style type="text/css">code{white-space: pre;}</style>
|
||||
<script type="text/javascript">
|
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if (window.hljs) {
|
||||
hljs.configure({languages: []});
|
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hljs.initHighlightingOnLoad();
|
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if (document.readyState && document.readyState === "complete") {
|
||||
window.setTimeout(function() { hljs.initHighlighting(); }, 0);
|
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}
|
||||
}
|
||||
</script>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
||||
<style type = "text/css">
|
||||
.main-container {
|
||||
max-width: 940px;
|
||||
margin-left: auto;
|
||||
margin-right: auto;
|
||||
}
|
||||
img {
|
||||
max-width:100%;
|
||||
}
|
||||
.tabbed-pane {
|
||||
padding-top: 12px;
|
||||
}
|
||||
.html-widget {
|
||||
margin-bottom: 20px;
|
||||
}
|
||||
button.code-folding-btn:focus {
|
||||
outline: none;
|
||||
}
|
||||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
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}
|
||||
</style>
|
||||
|
||||
|
||||
<style type="text/css">
|
||||
.dropdown-submenu {
|
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position: relative;
|
||||
}
|
||||
.dropdown-submenu>.dropdown-menu {
|
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top: 0;
|
||||
left: 100%;
|
||||
margin-top: -6px;
|
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margin-left: -1px;
|
||||
border-radius: 0 6px 6px 6px;
|
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}
|
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|
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display: block;
|
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}
|
||||
.dropdown-submenu>a:after {
|
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display: block;
|
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content: " ";
|
||||
float: right;
|
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width: 0;
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height: 0;
|
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border-color: transparent;
|
||||
border-style: solid;
|
||||
border-width: 5px 0 5px 5px;
|
||||
border-left-color: #cccccc;
|
||||
margin-top: 5px;
|
||||
margin-right: -10px;
|
||||
}
|
||||
.dropdown-submenu:hover>a:after {
|
||||
border-left-color: #adb5bd;
|
||||
}
|
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.dropdown-submenu.pull-left {
|
||||
float: none;
|
||||
}
|
||||
.dropdown-submenu.pull-left>.dropdown-menu {
|
||||
left: -100%;
|
||||
margin-left: 10px;
|
||||
border-radius: 6px 0 6px 6px;
|
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}
|
||||
</style>
|
||||
|
||||
<script type="text/javascript">
|
||||
// manage active state of menu based on current page
|
||||
$(document).ready(function () {
|
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// active menu anchor
|
||||
href = window.location.pathname
|
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href = href.substr(href.lastIndexOf('/') + 1)
|
||||
if (href === "")
|
||||
href = "index.html";
|
||||
var menuAnchor = $('a[href="' + href + '"]');
|
||||
|
||||
// mark it active
|
||||
menuAnchor.tab('show');
|
||||
|
||||
// if it's got a parent navbar menu mark it active as well
|
||||
menuAnchor.closest('li.dropdown').addClass('active');
|
||||
|
||||
// Navbar adjustments
|
||||
var navHeight = $(".navbar").first().height() + 15;
|
||||
var style = document.createElement('style');
|
||||
var pt = "padding-top: " + navHeight + "px; ";
|
||||
var mt = "margin-top: -" + navHeight + "px; ";
|
||||
var css = "";
|
||||
// offset scroll position for anchor links (for fixed navbar)
|
||||
for (var i = 1; i <= 6; i++) {
|
||||
css += ".section h" + i + "{ " + pt + mt + "}\n";
|
||||
}
|
||||
style.innerHTML = "body {" + pt + "padding-bottom: 40px; }\n" + css;
|
||||
document.head.appendChild(style);
|
||||
});
|
||||
</script>
|
||||
|
||||
<!-- tabsets -->
|
||||
|
||||
<style type="text/css">
|
||||
.tabset-dropdown > .nav-tabs {
|
||||
display: inline-table;
|
||||
max-height: 500px;
|
||||
min-height: 44px;
|
||||
overflow-y: auto;
|
||||
border: 1px solid #ddd;
|
||||
border-radius: 4px;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs > li.active:before {
|
||||
content: "";
|
||||
font-family: 'Glyphicons Halflings';
|
||||
display: inline-block;
|
||||
padding: 10px;
|
||||
border-right: 1px solid #ddd;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
|
||||
content: "";
|
||||
border: none;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
|
||||
content: "";
|
||||
font-family: 'Glyphicons Halflings';
|
||||
display: inline-block;
|
||||
padding: 10px;
|
||||
border-right: 1px solid #ddd;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs > li.active {
|
||||
display: block;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs > li > a,
|
||||
.tabset-dropdown > .nav-tabs > li > a:focus,
|
||||
.tabset-dropdown > .nav-tabs > li > a:hover {
|
||||
border: none;
|
||||
display: inline-block;
|
||||
border-radius: 4px;
|
||||
background-color: transparent;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
|
||||
display: block;
|
||||
float: none;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs > li {
|
||||
display: none;
|
||||
}
|
||||
</style>
|
||||
|
||||
<!-- code folding -->
|
||||
|
||||
|
||||
|
||||
|
||||
</head>
|
||||
|
||||
<body>
|
||||
|
||||
|
||||
<div class="container-fluid main-container">
|
||||
|
||||
|
||||
|
||||
|
||||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
</button>
|
||||
<a class="navbar-brand" href="index.html"><div><img src="ohdsi16x16.png"></img> OMOP Common Data Model </div></a>
|
||||
</div>
|
||||
<div id="navbar" class="navbar-collapse collapse">
|
||||
<ul class="nav navbar-nav">
|
||||
<li>
|
||||
<a href="index.html">
|
||||
<span class="fa fa-home"></span>
|
||||
|
||||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="background.html">Model Background</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="cdmRefreshProcess.html">CDM Refresh Process</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="vocabulary.html">How the Vocabulary is Built</a>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
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<span class="fa fa-list-alt"></span>
|
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|
||||
Conventions
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="dataModelConventions.html">General Conventions</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="ehrObsPeriods.html">Observation Periods for EHR Data</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="cdmPrivacy.html">Patient Privacy and OMOP</a>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm30.html">CDM v3.0</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="cdm60.html">CDM v6.0</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="cdm54Changes.html">Changes from CDM v5.3</a>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="download.html">Download the DDL</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="cdmRPackage.html">Use the CDM R Package</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="drug_dose.html">Calculate Drug Dose</a>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="sqlScripts.html">SQL Scripts</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="contribute.html">Ask a Question</a>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<ul class="nav navbar-nav navbar-right">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel">
|
||||
<span class="fa fa-github"></span>
|
||||
|
||||
</a>
|
||||
</li>
|
||||
</ul>
|
||||
</div><!--/.nav-collapse -->
|
||||
</div><!--/.container -->
|
||||
</div><!--/.navbar -->
|
||||
|
||||
<div id="header">
|
||||
|
||||
|
||||
|
||||
<h1 class="title toc-ignore"><div>
|
||||
<img src="ohdsi40x40.png"></img> CDM Request Decision Tree
|
||||
</div></h1>
|
||||
|
||||
</div>
|
||||
|
||||
|
||||
<p>If you have arrived to this page then you must be thinking <strong>HELP! I have some data that doesn’t fit in the CDM!</strong> Never fear as this handy guide will point you in the right direction and all you have to do is answer a few questions.</p>
|
||||
<p><strong>First things first, do you think you will need to change the OMOP Common Data Model itself or are you solely looking for vocabulary support?</strong></p>
|
||||
<p><a href="networkUseCase.html">I think I need to change the OMOP CDM</a></p>
|
||||
<p><a href="vocabN.html">I need vocabulary support</a></p>
|
||||
|
||||
|
||||
|
||||
|
||||
</div>
|
||||
|
||||
<script>
|
||||
|
||||
// add bootstrap table styles to pandoc tables
|
||||
function bootstrapStylePandocTables() {
|
||||
$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
|
||||
}
|
||||
$(document).ready(function () {
|
||||
bootstrapStylePandocTables();
|
||||
});
|
||||
|
||||
|
||||
</script>
|
||||
|
||||
<!-- tabsets -->
|
||||
|
||||
<script>
|
||||
$(document).ready(function () {
|
||||
window.buildTabsets("TOC");
|
||||
});
|
||||
|
||||
$(document).ready(function () {
|
||||
$('.tabset-dropdown > .nav-tabs > li').click(function () {
|
||||
$(this).parent().toggleClass('nav-tabs-open');
|
||||
});
|
||||
});
|
||||
</script>
|
||||
|
||||
<!-- code folding -->
|
||||
|
||||
|
||||
<!-- dynamically load mathjax for compatibility with self-contained -->
|
||||
<script>
|
||||
(function () {
|
||||
var script = document.createElement("script");
|
||||
script.type = "text/javascript";
|
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script.src = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
|
||||
document.getElementsByTagName("head")[0].appendChild(script);
|
||||
})();
|
||||
</script>
|
||||
|
||||
</body>
|
||||
</html>
|
||||
|
|
@ -13,7 +13,7 @@
|
|||
|
||||
<title>Preserving Privacy in an OMOP CDM Implementation</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
|
|
@ -63,6 +63,7 @@ if (window.hljs) {
|
|||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
|
@ -88,6 +89,9 @@ button.code-folding-btn:focus {
|
|||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
|
|
@ -312,7 +316,7 @@ div.tocify {
|
|||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
|
|
@ -328,7 +332,7 @@ div.tocify {
|
|||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
||||
|
|
@ -348,7 +352,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-list-alt"></span>
|
||||
|
||||
Conventions
|
||||
|
|
@ -368,7 +372,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
|
@ -386,7 +390,7 @@ div.tocify {
|
|||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
|
|
@ -399,19 +403,22 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -421,7 +428,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
|
@ -441,7 +448,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
|
@ -449,6 +456,9 @@ div.tocify {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -13,7 +13,7 @@
|
|||
|
||||
<title>CDM R Package Demo</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
|
|
@ -60,6 +60,7 @@ if (window.hljs) {
|
|||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
|
@ -85,6 +86,9 @@ button.code-folding-btn:focus {
|
|||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
|
|
@ -236,7 +240,7 @@ $(document).ready(function () {
|
|||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
|
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@ -252,7 +256,7 @@ $(document).ready(function () {
|
|||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
||||
|
|
@ -272,7 +276,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-list-alt"></span>
|
||||
|
||||
Conventions
|
||||
|
|
@ -292,7 +296,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
|
@ -310,7 +314,7 @@ $(document).ready(function () {
|
|||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
|
|
@ -323,19 +327,22 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -345,7 +352,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
|
@ -365,7 +372,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
|
@ -373,6 +380,9 @@ $(document).ready(function () {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -13,7 +13,7 @@
|
|||
|
||||
<title>cdmRefreshProcess.knit</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
|
|
@ -63,6 +63,7 @@ if (window.hljs) {
|
|||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
|
@ -88,6 +89,9 @@ button.code-folding-btn:focus {
|
|||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
|
|
@ -312,7 +316,7 @@ div.tocify {
|
|||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
|
|
@ -328,7 +332,7 @@ div.tocify {
|
|||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
||||
|
|
@ -348,7 +352,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-list-alt"></span>
|
||||
|
||||
Conventions
|
||||
|
|
@ -368,7 +372,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
|
@ -386,7 +390,7 @@ div.tocify {
|
|||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
|
|
@ -399,19 +403,22 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -421,7 +428,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
|
@ -441,7 +448,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
|
@ -449,6 +456,9 @@ div.tocify {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
@ -485,21 +495,22 @@ div.tocify {
|
|||
|
||||
|
||||
<p>The OMOP Common Data Model is managed by the OHDSI CDM Working Group. The formal remit of the CDM Working Group (WG) is to hear proposals for change, ratifying only those with valid use cases and data to support them. Then, once ratified, these proposals are incorporated into the next version of the CDM. In the past, this was done by the WG alone. The group would invite others from around the community to present use cases for change and suggestions for improvement. The WG would then vote on the proposals and a new CDM version would be released after a certain period of time or if enough proposals were voted in. This approach worked when the community was smaller but as it is growing rapidly the CDM WG needed to adapt the refresh cycle such that everyone has an opportunity to weigh in on the proposed changes.</p>
|
||||
<p>Looking to make a change or addition to the OMOP CDM? Please answer the questions in the <a href="cdmDecisionTree.html">decision tree</a> to point you in the right direction.</p>
|
||||
<div id="cdm-refresh-cycle" class="section level2">
|
||||
<h2>CDM Refresh Cycle</h2>
|
||||
<p><img src="images/CDM_refresh_cycle.png" /></p>
|
||||
<div id="define-new-version-completed-for-v5.4" class="section level3">
|
||||
<h3>1. Define New Version [Completed for v5.4]</h3>
|
||||
<p>The image above describes the new CDM refresh cycle. It begins with <strong>defining a new version</strong>. This has been completed for the current cycle. Issues and proposals on the github were considered during a 4-hour workshop where it was decided the next CDM version will be CDM v5.4, building off of CDM v5.3. The group then participated in a rapid-fire voting activity to identify which changes should be incorporated into CDM v5.4. Any items that were not unanimously agreed upon were then discussed in small groups to hone the proposal and suggestions were presented back to the group. The final roadmap for CDM v5.4 can be found <a href="https://github.com/OHDSI/CommonDataModel/projects/3">here</a>.</p>
|
||||
<p>Looking to open a proposal to change or augment the CDM? Please open an <a href="https://github.com/OHDSI/CommonDataModel/issues">issue</a> and use the <strong>proposal template</strong>.</p>
|
||||
<div id="define-new-version" class="section level3">
|
||||
<h3>1. Define New Version</h3>
|
||||
<p>The image above describes the new CDM refresh cycle. It begins with <strong>defining a new version</strong>. Proposals are heard over the course of a year according to the <a href="cdmRequestProcess.html">CDM Request Process</a> and the ratified changes are added to the roadmap until such time that there are enough updates to warrant a new version of the model.</p>
|
||||
<p>Looking to open a proposal to change or augment the CDM? Please follow the questions in the <a href="cdmDecisionTree.html">decision tree</a> to help you determine what you will need.</p>
|
||||
</div>
|
||||
<div id="sign-off-from-work-groups-completed-for-v5.4" class="section level3">
|
||||
<h3>2. Sign off from Work Groups [Completed for v5.4]</h3>
|
||||
<div id="sign-off-from-work-groups" class="section level3">
|
||||
<h3>2. Sign off from Work Groups</h3>
|
||||
<p>Each member of the CDM WG is a liaison for another workgroup in the community. They are responsible for presenting the proposed changes to the CDM and collecting the feedback. This has resulted in very helpful suggestions from the EHR, Data Quality, Device, HADES, and ACHILLES groups. This outreach has proven to be very effective and should result in a very stable version.</p>
|
||||
</div>
|
||||
<div id="release-ddls" class="section level3">
|
||||
<h3>3. Release DDLs</h3>
|
||||
<p>After all changes and suggestions are agreed upon by the community and work groups the next step is to generate the DDLs. The CDM WG hosted a hackathon on August 18-19, 2021. During this time the group created an R package to automatically generate the DDLs and the code to instantiate an empty CDM instance. Changes were made to v5.3 to generate v5.4 and the repository was refactored.</p>
|
||||
<p>After all changes and suggestions are agreed upon by the community and work groups the next step is to generate the DDLs. For example, the CDM WG hosted a hackathon on August 18-19, 2021. During this time the group created an R package to automatically generate the DDLs and the code to instantiate an empty CDM instance. Changes were made to v5.3 to generate v5.4 and the repository was refactored.</p>
|
||||
</div>
|
||||
<div id="software-update" class="section level3">
|
||||
<h3>4. Software Update</h3>
|
||||
|
|
@ -513,7 +524,7 @@ div.tocify {
|
|||
<div id="cdm-wg-meeting-information" class="section level1">
|
||||
<h1>CDM WG Meeting Information</h1>
|
||||
<p>The CDM working group meets the first and third Tuesday of the month. See below for links to the meetings.</p>
|
||||
<p><strong>Every first Tuesday of the month at 1pm est</strong> <a href="https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1601910741972?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%2281c21b6d-448d-4634-abbc-6b0962d1138a%22%7d">Teams Meeting</a></p>
|
||||
<p><strong>Every first Tuesday of the month at 10am est</strong> <a href="https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1601910741972?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%2281c21b6d-448d-4634-abbc-6b0962d1138a%22%7d">Teams Meeting</a></p>
|
||||
<p><strong>Every third Tuesday of the month at 1pm est</strong> <a href="https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1611000164347?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%223c193b7f-c2ab-4bcf-b88c-f89a6b1fba38%22%7d">Teams Meeting</a></p>
|
||||
<p><strong>Note</strong> These were recently changed from a Skype meeting to a Microsoft Teams meeting. If you do you have access to the OHDSI Teams Tenet, please contact Clair Blacketer at <a href="mailto:mblacke@its.jnj.com" class="email">mblacke@its.jnj.com</a>.</p>
|
||||
<div id="cdm-wg-important-links" class="section level3">
|
||||
|
|
|
|||
|
|
@ -0,0 +1,665 @@
|
|||
<!DOCTYPE html>
|
||||
|
||||
<html>
|
||||
|
||||
<head>
|
||||
|
||||
<meta charset="utf-8" />
|
||||
<meta name="generator" content="pandoc" />
|
||||
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
|
||||
|
||||
|
||||
|
||||
|
||||
<title>cdmRequestProcess.knit</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
|
||||
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
|
||||
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
|
||||
<style>h1 {font-size: 34px;}
|
||||
h1.title {font-size: 38px;}
|
||||
h2 {font-size: 30px;}
|
||||
h3 {font-size: 24px;}
|
||||
h4 {font-size: 18px;}
|
||||
h5 {font-size: 16px;}
|
||||
h6 {font-size: 12px;}
|
||||
code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
|
||||
pre:not([class]) { background-color: white }</style>
|
||||
<script src="site_libs/jqueryui-1.11.4/jquery-ui.min.js"></script>
|
||||
<link href="site_libs/tocify-1.9.1/jquery.tocify.css" rel="stylesheet" />
|
||||
<script src="site_libs/tocify-1.9.1/jquery.tocify.js"></script>
|
||||
<script src="site_libs/navigation-1.1/tabsets.js"></script>
|
||||
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|
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|
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|
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<h1 class="title toc-ignore"><div>
|
||||
<img src="ohdsi40x40.png"></img> How to Request Changes to the CDM
|
||||
</div></h1>
|
||||
|
||||
</div>
|
||||
|
||||
|
||||
<p>Are you in the right place? Please answer the questions in the <a href="cdmDecisionTree.html">decision tree</a> prior to beginning a CDM Request to make sure you aren’t missing something.</p>
|
||||
<p>As OHDSI is an open-source community working towards developing a Common Data Model that fulfills the needs of its users, it is often the case that changes need to be made to the model as the community and its research continues to mature. However, the number of people, institutions, and initiatives that rely on the OMOP CDM to advance the science of observational health has grown dramatically since its inception in 2015. Therefore, care must be taken when considering any update to the model, big or small. This document outlines the process that should be taken to ratify a change to the CDM.</p>
|
||||
<p><strong>If you would like guidance prior to starting this process, consider contacting us on our <a href="https://github.com/OHDSI/CommonDataModel">GitHub</a> or <a href="https://teams.microsoft.com/l/team/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/conversations?groupId=a6f2c516-e568-4974-8f1e-a7bdc2f997c5&tenantId=a30f0094-9120-4aab-ba4c-e5509023b2d5">Teams Channel</a>.</strong></p>
|
||||
<div id="scope" class="section level3">
|
||||
<h3>Scope</h3>
|
||||
<ul>
|
||||
<li>What kind of changes?
|
||||
<ul>
|
||||
<li>Minor, e.g. new field in existing table</li>
|
||||
<li>Major, e.g. breaking changes, additional tables</li>
|
||||
</ul></li>
|
||||
<li>Who can propose changes?
|
||||
<ul>
|
||||
<li>Individuals, OHDSI working groups, organizations</li>
|
||||
</ul></li>
|
||||
</ul>
|
||||
</div>
|
||||
<div id="step-1-proposal" class="section level2">
|
||||
<h2>Step 1: Proposal</h2>
|
||||
<p>Once a group or organization has decided on the update they would like made to the model, they must produce a document including the following:</p>
|
||||
<ol style="list-style-type: decimal">
|
||||
<li>A clear description of the change or addition including the User Guide and ETL Conventions in the same structure as what is present on the website for every table and field currently in the CDM.</li>
|
||||
<li>A clearly defined use case noting why the latest version of the OMOP CDM fails to adequately address said use case. This should include describing what you have already tried with the latest version of the OMOP CDM and why it does not meet your needs.</li>
|
||||
<li>An example of how the requested change or addition will be used in practice. This can be in the form of sample data, SQL code, a diagram, or text. The proposal can optionally include suggestions as to how other OHDSI tools (Achilles, DataQualityDashboard, Atlas, etc.) should work with your change or addition.</li>
|
||||
</ol>
|
||||
<p>Once the document is ready to submit, please email <a href="mailto:a58abde7.ohdsi.org@amer.teams.ms">CDM Proposals - Workgroup - Common Data Model</a>. This will go directly to a separate channel in the OHDSI Teams environment that is available to all members of the CDM Working Group. After submitting your document with your proposal to email listed above, someone in the OMOP CDM Working Group will respond to you within 2 weeks. The potential outcomes are as follows:</p>
|
||||
<ul>
|
||||
<li>Proposal merits further review (move on to next steps)</li>
|
||||
<li>Proposal is not ready for workgroup review due to one or more factors
|
||||
<ul>
|
||||
<li>Incomplete</li>
|
||||
<li>Insufficiently aligned with the OMOP framework</li>
|
||||
<li>Poorly described use case</li>
|
||||
</ul></li>
|
||||
</ul>
|
||||
</div>
|
||||
<div id="step-2-initial-presentation" class="section level2">
|
||||
<h2>Step 2: Initial Presentation</h2>
|
||||
<p>Should your proposals merit further review, the OMOP CDM Working Group will reach out to you to schedule a time for you to present your case at an upcoming meeting. You will be given 15-30 minutes to present your document and you can include anything you feel will help illustrate the need and your potential solution. The group will then discuss, ask questions, and potentially offer other solutions. Depending on the nature of the request, this may go over multiple sessions and you may be asked to make changes to your initial design. At the end of this process your proposal will then be put to consensus in the CDM WG. If the group decides no, they will give feedback describing why they did not feel your proposal should be accepted at this time. If the group decides yes, you move on to step 3.</p>
|
||||
<p><strong>Potential Decision Criteria:</strong></p>
|
||||
<ul>
|
||||
<li>If the change is foundational to OHDSI tools, then the proposal will be put to the larger community open to public comment</li>
|
||||
<li>How generalizable is your change? Can it be readily applied to other use cases?</li>
|
||||
<li>Are the proposed changes/additions well designed from a modeling perspective? Do they follow the existing OMOP CDM conventions?</li>
|
||||
<li>What are the consequences of the change? Are they potentially breaking changes or are they just changes to existing conventions? Will they require the remapping of existing OMOP datasources?</li>
|
||||
<li>How complicated is your change? Is it an addition of a field or multiple tables?</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div id="step-3-preliminary-decision" class="section level2">
|
||||
<h2>Step 3: Preliminary Decision</h2>
|
||||
<p>If the proposal is accepted in the preliminary decision, then a branch will be created in the CommonDataModel repository, based on the latest version of the OMOP CDM in use (currently v5.4). It will then be your responsibility to apply the change programmatically in this branch. This should include:</p>
|
||||
<ul>
|
||||
<li>Updating the CSV file with the CDM specification, including the User Guide and ETL Conventions documentation</li>
|
||||
<li>Generating the DDL files with the change</li>
|
||||
<li>Testing the new DDL files in at least one supported environment</li>
|
||||
</ul>
|
||||
<p>Once the DDLs with the proposed change are created and tested, you should then ETL some data (either real or synthetic) into the new table/fields. Then, an example cohort should be created that utilizes the change or addition and clearly displays how it can be used in a real study. It is expected that during this stage the proposal will change as you work through your idea in a tangible environment.</p>
|
||||
<p><strong>Potential Decision Criteria:</strong></p>
|
||||
<ul>
|
||||
<li>How would you evaluate the quality of this new field/table?</li>
|
||||
<li>What characterizations would you perform?</li>
|
||||
<li>How would you perform a study using this new feature?</li>
|
||||
</ul>
|
||||
<p><strong>Potential Outcomes:</strong></p>
|
||||
<ul>
|
||||
<li>Proposal demonstrates merit for further consideration as:
|
||||
<ul>
|
||||
<li>a core data model change (move on to next steps)</li>
|
||||
<li>an extension (how do we deal with these/do we have ownership of them?)</li>
|
||||
</ul></li>
|
||||
<li>Proposal does not demonstrate merit for further consideration at this time, and:
|
||||
<ul>
|
||||
<li>recommend as a LOCAL extension</li>
|
||||
<li>recommend a different course</li>
|
||||
</ul></li>
|
||||
</ul>
|
||||
</div>
|
||||
<div id="step-4-final-presentation" class="section level2">
|
||||
<h2>Step 4: Final Presentation</h2>
|
||||
<p>After generating, testing, and implementing your proposal in a real-world environment the CDM working group will invite you again to present your findings in another 15-30 minute presentation. This should include learnings from the exercise and any updates made to the initial proposal.</p>
|
||||
</div>
|
||||
<div id="step-5-final-decision" class="section level2">
|
||||
<h2>Step 5: Final Decision</h2>
|
||||
<p>At this point, the working group liaisons will also take the proposal to other groups to elicit feedback. Then the CDM working group will vote and give a final decision on the proposed change. If ratified, the branch in the repository will be merged into the develop branch to be included in a next version of the OMOP Common Data Model.</p>
|
||||
<p>The change should initiate requests for features in tools. The end of this process should be a trigger for using the new feature as per the use case. The group should also produce at least one query for the query library on how to work with the new addition/change.</p>
|
||||
<div id="resources" class="section level3">
|
||||
<h3>Resources</h3>
|
||||
<p>“Implementing & adopting a customized OMOP Common Data Model” (Melany Philofsky, OHDSI Symposium 2021) <a href="https://www.ohdsi.org/2021-global-symposium-showcase-18/" class="uri">https://www.ohdsi.org/2021-global-symposium-showcase-18/</a></p>
|
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<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
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|
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|
||||
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|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
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|
||||
<a href="cdmRPackage.html">Use the CDM R Package</a>
|
||||
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|
||||
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||||
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|
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||||
|
||||
|
||||
<h1 class="title toc-ignore">Contact the Vocab Team</h1>
|
||||
|
||||
</div>
|
||||
|
||||
|
||||
<p>Okay so you have something you would like to add to the CDM but there is not an existing OMOP vocabulary nor an open-source vocabulary we can bring in to support it. <strong>In this case, please contact the vocabulary team on next steps</strong> as data elements in the CDM must have a vocabulary in place before they can be implemented.</p>
|
||||
<p><a href="https://teams.microsoft.com/l/channel/19%3a31208179438d45749ff484124e7b1e5e%40thread.tacv2/Vocabulary%2520Subgroup?groupId=a6f2c516-e568-4974-8f1e-a7bdc2f997c5&tenantId=a30f0094-9120-4aab-ba4c-e5509023b2d5">Vocabulary Teams Channel</a></p>
|
||||
<p>Once you come to consensus with the vocabulary team regarding your needs, please follow the <a href="cdmRequestProcess.html">CDM Request Process</a> to begin the steps soliciting a change or addition to the model itself. Need more guidance? Consider contacting the CDM Working Group on our <a href="https://github.com/OHDSI/CommonDataModel">GitHub</a> or <a href="https://teams.microsoft.com/l/team/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/conversations?groupId=a6f2c516-e568-4974-8f1e-a7bdc2f997c5&tenantId=a30f0094-9120-4aab-ba4c-e5509023b2d5">Teams Channel</a>.</p>
|
||||
|
||||
|
||||
|
||||
|
||||
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|
||||
|
||||
<script>
|
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|
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|
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$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
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<link rel="stylesheet" href="style.css" type="text/css" />
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@ -88,6 +89,9 @@ button.code-folding-btn:focus {
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details > summary > p:only-child {
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display: inline;
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pre code {
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<span class="fa fa-landmark"></span>
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Background
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@ -348,7 +352,7 @@ div.tocify {
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</ul>
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<span class="fa fa-list-alt"></span>
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Conventions
|
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@ -368,7 +372,7 @@ div.tocify {
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</ul>
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
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<span class="fa fa-history"></span>
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CDM Versions
|
||||
|
|
@ -386,7 +390,7 @@ div.tocify {
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<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
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<ul class="dropdown-menu" role="menu">
|
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<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
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|
@ -399,19 +403,22 @@ div.tocify {
|
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</ul>
|
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</li>
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<li class="dropdown">
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
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<span class="fa fa-plus-square"></span>
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Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -421,7 +428,7 @@ div.tocify {
|
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</ul>
|
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</li>
|
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<li class="dropdown">
|
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
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<span class="fa fa-question"></span>
|
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|
||||
How to
|
||||
|
|
@ -441,7 +448,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
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<li class="dropdown">
|
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
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Support
|
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@ -449,6 +456,9 @@ div.tocify {
|
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<span class="caret"></span>
|
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</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -13,7 +13,7 @@
|
|||
|
||||
<title>dataModelConventions.knit</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
|
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<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
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<meta name="viewport" content="width=device-width, initial-scale=1" />
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<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
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|
@ -63,6 +63,7 @@ if (window.hljs) {
|
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|
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|
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<link rel="stylesheet" href="style.css" type="text/css" />
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||||
|
||||
|
|
@ -88,6 +89,9 @@ button.code-folding-btn:focus {
|
|||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
|
|
@ -312,7 +316,7 @@ div.tocify {
|
|||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
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|
|
@ -328,7 +332,7 @@ div.tocify {
|
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</a>
|
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</li>
|
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<li class="dropdown">
|
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
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<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
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|
|
@ -348,7 +352,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
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<li class="dropdown">
|
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
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|
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<span class="fa fa-list-alt"></span>
|
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|
||||
Conventions
|
||||
|
|
@ -368,7 +372,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
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|
||||
CDM Versions
|
||||
|
|
@ -386,7 +390,7 @@ div.tocify {
|
|||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
|
|
@ -399,19 +403,22 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
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|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -421,7 +428,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
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|
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How to
|
||||
|
|
@ -441,7 +448,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
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<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
|
@ -449,6 +456,9 @@ div.tocify {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -13,7 +13,7 @@
|
|||
|
||||
<title>Download</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
|
|
@ -63,6 +63,7 @@ if (window.hljs) {
|
|||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
|
@ -88,6 +89,9 @@ button.code-folding-btn:focus {
|
|||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
|
|
@ -312,7 +316,7 @@ div.tocify {
|
|||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
|
|
@ -328,7 +332,7 @@ div.tocify {
|
|||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
||||
|
|
@ -348,7 +352,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-list-alt"></span>
|
||||
|
||||
Conventions
|
||||
|
|
@ -368,7 +372,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
|
@ -386,7 +390,7 @@ div.tocify {
|
|||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
|
|
@ -399,19 +403,22 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -421,7 +428,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
|
@ -441,7 +448,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
|
@ -449,6 +456,9 @@ div.tocify {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -15,7 +15,7 @@
|
|||
|
||||
<title>drug_dose.knit</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
|
|
@ -62,6 +62,7 @@ if (window.hljs) {
|
|||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
|
@ -87,6 +88,9 @@ button.code-folding-btn:focus {
|
|||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
|
|
@ -238,7 +242,7 @@ $(document).ready(function () {
|
|||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
|
|
@ -254,7 +258,7 @@ $(document).ready(function () {
|
|||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
||||
|
|
@ -274,7 +278,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-list-alt"></span>
|
||||
|
||||
Conventions
|
||||
|
|
@ -294,7 +298,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
|
@ -312,7 +316,7 @@ $(document).ready(function () {
|
|||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
|
|
@ -325,19 +329,22 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -347,7 +354,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
|
@ -367,7 +374,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
|
@ -375,6 +382,9 @@ $(document).ready(function () {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -13,7 +13,7 @@
|
|||
|
||||
<title>Observation Period Considerations for EHR Data</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
|
|
@ -60,6 +60,7 @@ if (window.hljs) {
|
|||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
|
@ -85,6 +86,9 @@ button.code-folding-btn:focus {
|
|||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
|
|
@ -236,7 +240,7 @@ $(document).ready(function () {
|
|||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
|
|
@ -252,7 +256,7 @@ $(document).ready(function () {
|
|||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
||||
|
|
@ -272,7 +276,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-list-alt"></span>
|
||||
|
||||
Conventions
|
||||
|
|
@ -292,7 +296,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
|
@ -310,7 +314,7 @@ $(document).ready(function () {
|
|||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
|
|
@ -323,19 +327,22 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -345,7 +352,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
|
@ -365,7 +372,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
|
@ -373,6 +380,9 @@ $(document).ready(function () {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -406,11 +406,14 @@ div.tocify {
|
|||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
|
|
@ -453,6 +456,9 @@ div.tocify {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -330,11 +330,14 @@ $(document).ready(function () {
|
|||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
|
|
@ -377,6 +380,9 @@ $(document).ready(function () {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
@ -501,7 +507,7 @@ $(document).ready(function () {
|
|||
<div id="meeting-information" class="section level3">
|
||||
<h3>Meeting Information</h3>
|
||||
<p>The CDM working group meets the first and third Tuesday of the month. See below for links to the meetings.</p>
|
||||
<p><strong>Every first Tuesday of the month at 1pm est</strong> <a href="https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1601910741972?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%2281c21b6d-448d-4634-abbc-6b0962d1138a%22%7d">Teams Meeting</a></p>
|
||||
<p><strong>Every first Tuesday of the month at 10am est</strong> <a href="https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1601910741972?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%2281c21b6d-448d-4634-abbc-6b0962d1138a%22%7d">Teams Meeting</a></p>
|
||||
<p><strong>Every third Tuesday of the month at 1pm est</strong> <a href="https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1611000164347?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%223c193b7f-c2ab-4bcf-b88c-f89a6b1fba38%22%7d">Teams Meeting</a></p>
|
||||
<p><strong>Note</strong> If you do you have access to the OHDSI Teams Tenet, either contact Clair Blacketer at <a href="mailto:mblacke@its.jnj.com" class="email">mblacke@its.jnj.com</a> or fill out <a href="https://forms.office.com/Pages/ResponsePage.aspx?id=lAAPoyCRq0q6TOVQkCOy1ZyG6Ud_r2tKuS0HcGnqiQZUOVJFUzBFWE1aSVlLN0ozR01MUVQ4T0RGNyQlQCN0PWcu">this form</a> and check “Common Data Model”</p>
|
||||
</div>
|
||||
|
|
|
|||
|
|
@ -13,7 +13,7 @@
|
|||
|
||||
<title>Indices, Primary Keys and Foreign Key Constraints</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
|
|
@ -63,6 +63,7 @@ if (window.hljs) {
|
|||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
|
@ -88,6 +89,9 @@ button.code-folding-btn:focus {
|
|||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
|
|
@ -312,7 +316,7 @@ div.tocify {
|
|||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
|
|
@ -328,7 +332,7 @@ div.tocify {
|
|||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
||||
|
|
@ -348,7 +352,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-list-alt"></span>
|
||||
|
||||
Conventions
|
||||
|
|
@ -368,7 +372,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
|
@ -386,7 +390,7 @@ div.tocify {
|
|||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
|
|
@ -399,19 +403,22 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -421,7 +428,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
|
@ -441,7 +448,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
|
@ -449,6 +456,9 @@ div.tocify {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -0,0 +1,467 @@
|
|||
<!DOCTYPE html>
|
||||
|
||||
<html>
|
||||
|
||||
<head>
|
||||
|
||||
<meta charset="utf-8" />
|
||||
<meta name="generator" content="pandoc" />
|
||||
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
|
||||
|
||||
|
||||
|
||||
|
||||
<title>Leave As Is</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
|
||||
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
|
||||
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
|
||||
<style>h1 {font-size: 34px;}
|
||||
h1.title {font-size: 38px;}
|
||||
h2 {font-size: 30px;}
|
||||
h3 {font-size: 24px;}
|
||||
h4 {font-size: 18px;}
|
||||
h5 {font-size: 16px;}
|
||||
h6 {font-size: 12px;}
|
||||
code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
|
||||
pre:not([class]) { background-color: white }</style>
|
||||
<script src="site_libs/navigation-1.1/tabsets.js"></script>
|
||||
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
|
||||
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
|
||||
<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
|
||||
<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />
|
||||
<link rel='shortcut icon' type='image/x-icon' href='favicon.ico' />
|
||||
|
||||
<style type="text/css">
|
||||
code{white-space: pre-wrap;}
|
||||
span.smallcaps{font-variant: small-caps;}
|
||||
span.underline{text-decoration: underline;}
|
||||
div.column{display: inline-block; vertical-align: top; width: 50%;}
|
||||
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
|
||||
ul.task-list{list-style: none;}
|
||||
</style>
|
||||
|
||||
<style type="text/css">code{white-space: pre;}</style>
|
||||
<script type="text/javascript">
|
||||
if (window.hljs) {
|
||||
hljs.configure({languages: []});
|
||||
hljs.initHighlightingOnLoad();
|
||||
if (document.readyState && document.readyState === "complete") {
|
||||
window.setTimeout(function() { hljs.initHighlighting(); }, 0);
|
||||
}
|
||||
}
|
||||
</script>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
||||
<style type = "text/css">
|
||||
.main-container {
|
||||
max-width: 940px;
|
||||
margin-left: auto;
|
||||
margin-right: auto;
|
||||
}
|
||||
img {
|
||||
max-width:100%;
|
||||
}
|
||||
.tabbed-pane {
|
||||
padding-top: 12px;
|
||||
}
|
||||
.html-widget {
|
||||
margin-bottom: 20px;
|
||||
}
|
||||
button.code-folding-btn:focus {
|
||||
outline: none;
|
||||
}
|
||||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
</style>
|
||||
|
||||
|
||||
<style type="text/css">
|
||||
.dropdown-submenu {
|
||||
position: relative;
|
||||
}
|
||||
.dropdown-submenu>.dropdown-menu {
|
||||
top: 0;
|
||||
left: 100%;
|
||||
margin-top: -6px;
|
||||
margin-left: -1px;
|
||||
border-radius: 0 6px 6px 6px;
|
||||
}
|
||||
.dropdown-submenu:hover>.dropdown-menu {
|
||||
display: block;
|
||||
}
|
||||
.dropdown-submenu>a:after {
|
||||
display: block;
|
||||
content: " ";
|
||||
float: right;
|
||||
width: 0;
|
||||
height: 0;
|
||||
border-color: transparent;
|
||||
border-style: solid;
|
||||
border-width: 5px 0 5px 5px;
|
||||
border-left-color: #cccccc;
|
||||
margin-top: 5px;
|
||||
margin-right: -10px;
|
||||
}
|
||||
.dropdown-submenu:hover>a:after {
|
||||
border-left-color: #adb5bd;
|
||||
}
|
||||
.dropdown-submenu.pull-left {
|
||||
float: none;
|
||||
}
|
||||
.dropdown-submenu.pull-left>.dropdown-menu {
|
||||
left: -100%;
|
||||
margin-left: 10px;
|
||||
border-radius: 6px 0 6px 6px;
|
||||
}
|
||||
</style>
|
||||
|
||||
<script type="text/javascript">
|
||||
// manage active state of menu based on current page
|
||||
$(document).ready(function () {
|
||||
// active menu anchor
|
||||
href = window.location.pathname
|
||||
href = href.substr(href.lastIndexOf('/') + 1)
|
||||
if (href === "")
|
||||
href = "index.html";
|
||||
var menuAnchor = $('a[href="' + href + '"]');
|
||||
|
||||
// mark it active
|
||||
menuAnchor.tab('show');
|
||||
|
||||
// if it's got a parent navbar menu mark it active as well
|
||||
menuAnchor.closest('li.dropdown').addClass('active');
|
||||
|
||||
// Navbar adjustments
|
||||
var navHeight = $(".navbar").first().height() + 15;
|
||||
var style = document.createElement('style');
|
||||
var pt = "padding-top: " + navHeight + "px; ";
|
||||
var mt = "margin-top: -" + navHeight + "px; ";
|
||||
var css = "";
|
||||
// offset scroll position for anchor links (for fixed navbar)
|
||||
for (var i = 1; i <= 6; i++) {
|
||||
css += ".section h" + i + "{ " + pt + mt + "}\n";
|
||||
}
|
||||
style.innerHTML = "body {" + pt + "padding-bottom: 40px; }\n" + css;
|
||||
document.head.appendChild(style);
|
||||
});
|
||||
</script>
|
||||
|
||||
<!-- tabsets -->
|
||||
|
||||
<style type="text/css">
|
||||
.tabset-dropdown > .nav-tabs {
|
||||
display: inline-table;
|
||||
max-height: 500px;
|
||||
min-height: 44px;
|
||||
overflow-y: auto;
|
||||
border: 1px solid #ddd;
|
||||
border-radius: 4px;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs > li.active:before {
|
||||
content: "";
|
||||
font-family: 'Glyphicons Halflings';
|
||||
display: inline-block;
|
||||
padding: 10px;
|
||||
border-right: 1px solid #ddd;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
|
||||
content: "";
|
||||
border: none;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
|
||||
content: "";
|
||||
font-family: 'Glyphicons Halflings';
|
||||
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<p>Okay, so you do not have a network use case but multiple collaborators have access to the element you are interested in adding to the CDM. <strong>In this circumstance, the CDM Working Group suggests leaving the model as-is.</strong> Without a network use case there is no need to augment the data model. If this is something you need for your work, consider a <a href="localChange.html">local change</a> or a model extension.</p>
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||||
|
||||
<p>Since you do not have a network use case and this element is specific to your data source, <strong>feel free to create a local change to your instance of the OMOP Common Data Model.</strong> Augmenting the model at your institution for administrative purposes or other in-house needs is totally acceptable with the understanding that any local changes cannot and should not be relied upon in network studies or supported by the open-source tools.</p>
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|
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|
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||||
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||||
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||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
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<h1 class="title toc-ignore">Network Use Case</h1>
|
||||
|
||||
</div>
|
||||
|
||||
|
||||
<p>Alright, so you think you might need to change the OMOP Common Data Model. <strong>Do you have a documented network use case for this data need? This could take the form of an upcoming study or a convention for how to store information.</strong> In this scenario, at least two or more collaborators with data to contribute constitute a network need.</p>
|
||||
<p><a href="useCaseY.html">Yes, I have a network use case</a></p>
|
||||
<p><a href="useCaseN.html">No, I do not have a network use case</a></p>
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// add bootstrap table styles to pandoc tables
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</html>
|
||||
|
|
@ -13,7 +13,7 @@
|
|||
|
||||
<title>Oncology Extension</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
|
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@ -63,6 +63,7 @@ if (window.hljs) {
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<link rel="stylesheet" href="style.css" type="text/css" />
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@ -88,6 +89,9 @@ button.code-folding-btn:focus {
|
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summary {
|
||||
display: list-item;
|
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}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
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pre code {
|
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padding: 0;
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@ -312,7 +316,7 @@ div.tocify {
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<div class="navbar navbar-default navbar-fixed-top" role="navigation">
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CDM Versions
|
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@ -386,7 +390,7 @@ div.tocify {
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<a href="cdm53.html">CDM v5.3</a>
|
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
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<a href="cdm54.html">CDM v5.4</a>
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Proposals
|
||||
CDM Proposals
|
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|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
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||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
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|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
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|
|
@ -421,7 +428,7 @@ div.tocify {
|
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</ul>
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<li class="dropdown">
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
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How to
|
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@ -441,7 +448,7 @@ div.tocify {
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|
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|
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<li class="dropdown">
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
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Support
|
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@ -449,6 +456,9 @@ div.tocify {
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<span class="caret"></span>
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</a>
|
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<ul class="dropdown-menu" role="menu">
|
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<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
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</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
@ -486,429 +496,14 @@ div.tocify {
|
|||
<h2>OMOP Common Data Model Oncology Extension Documentation</h2>
|
||||
<p>This documentation details the ratified proposal of adding an oncology extension to the OMOP CDM. These tables and fields will become part of the next release (v6.1) of the Common Data Model. Below are their descriptions; showing <em>additions</em> to the model only. For example, two fields were added to the MEASUREMENT table as part of this extension so only those two fields are listed below for MEASUREMENT instead of the entire table. For more information, please see the <a href="https://github.com/OHDSI/OncologyWG/wiki">OMOP Oncology wiki site</a>.</p>
|
||||
<p>The DDLs for these tables are located on the Oncology github, as detailed in the <a href="https://github.com/OHDSI/OncologyWG/wiki/Oncology-CDM-Extension-Installation">installation instructions</a>.</p>
|
||||
<pre><code>## Warning in read.table(file = file, header = header, sep = sep, quote = quote, : incomplete final line found by readTableHeader on '../inst/csv/
|
||||
## OMOP_CDM_Oncology_Ex_Table_Level.csv'</code></pre>
|
||||
<pre><code>## Warning in read.table(file = file, header = header, sep = sep, quote = quote, : incomplete final line found
|
||||
## by readTableHeader on '../inst/csv/OMOP_CDM_Oncology_Ex_Table_Level.csv'</code></pre>
|
||||
<div id="episode" class="section level3 tabset tabset-pills">
|
||||
<h3 class="tabset tabset-pills">EPISODE</h3>
|
||||
<p><strong>Table Description</strong></p>
|
||||
<p>The EPISODE table aggregates lower-level clinical events (VISIT_OCCURRENCE, DRUG_EXPOSURE, PROCEDURE_OCCURRENCE, DEVICE_EXPOSURE) into a higher-level abstraction representing clinically and analytically relevant disease phases,outcomes and treatments. The EPISODE_EVENT table connects qualifying clinical events (VISIT_OCCURRENCE, DRUG_EXPOSURE, PROCEDURE_OCCURRENCE, DEVICE_EXPOSURE) to the appropriate EPISODE entry. For example cancers including their development over time, their treatment, and final resolution.</p>
|
||||
<p><strong>User Guide</strong></p>
|
||||
<p>Valid Episode Concepts belong to the ‘Episode’ domain. For cancer episodes please see [article], for non-cancer episodes please see [article]. If your source data does not have all episodes that are relevant to the therapeutic area, write only those you can easily derive from the data. It is understood that that table is not currently expected to be comprehensive.</p>
|
||||
<table class="table table-condensed table-hover" style="font-size: 13px; margin-left: auto; margin-right: auto;">
|
||||
<thead>
|
||||
<tr>
|
||||
<th style="text-align:left;">
|
||||
CDM Field
|
||||
</th>
|
||||
<th style="text-align:left;width: 3in; ">
|
||||
User Guide
|
||||
</th>
|
||||
<th style="text-align:left;width: 4in; ">
|
||||
ETL Conventions
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
Datatype
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
Required
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
Primary Key
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
Foreign Key
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
FK Table
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
FK Domain
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
FK Class
|
||||
</th>
|
||||
</tr>
|
||||
</thead>
|
||||
<tbody>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
episode_id
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
A unique identifier for each Episode.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
bigint
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
person_id
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
The PERSON_ID of the PERSON for whom the episode is recorded.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
bigint
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
PERSON
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
episode_concept_id
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
The EPISODE_CONCEPT_ID represents the kind abstraction related to the disease phase, outcome or treatment.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
Choose a concept in the Episode domain that best represents the ongoing disease phase, outcome, or treatment. Please see [article] for cancers and [article] for non-cancers describing how these are defined. <a href="https://athena.ohdsi.org/search-terms/terms?domain=Episode&page=1&pageSize=15&query=">Accepted Concepts</a>
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
integer
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Episode
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
episode_start_date
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
The date when the Episode beings.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
Please see [article] for how to define an Episode start date.
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
date
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
episode_start_datetime
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
The date and time when the Episode begins.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
datetime
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
episode_end_date
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
The date when the instance of the Episode is considered to have ended.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
Please see [article] for how to define an Episode end date.
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
date
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
episode_end_datetime
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
The date when the instance of the Episode is considered to have ended.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
datetime
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
episode_parent_id
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
Use this field to find the Episode that subsumes the given Episode record. This is used in the case that an Episode are nested into each other.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
If there are multiple nested levels to how Episodes are represented, the EPISODE_PARENT_ID can be used to record this relationship.
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
bigint
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
episode_number
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
For sequences of episodes, this is used to indicate the order the episodes occurred. For example, lines of treatment could be indicated here.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
Please see [article] for the details of how to count episodes.
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
integer
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
episode_object_concept_id
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
A Standard Concept representing the disease phase, outcome, or other abstraction of which the episode consists. For example, if the EPISODE_CONCEPT_ID is <a href="https://athena.ohdsi.org/search-terms/terms/32531">treatment regimen</a> then the EPISODE_OBJECT_CONCEPT_ID should contain the chemotherapy regimen concept, like <a href="https://athena.ohdsi.org/search-terms/terms/35804392">Afatinib monotherapy</a>.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
Episode entries from the ‘Disease Episode’ concept class should have an episode_object_concept_id that comes from the Condition domain. Episode entries from the ‘Treatment Episode’ concept class should have an episode_object_concept_id that scome from the ‘Procedure’ domain or ‘Regimen’ concept class.
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
integer
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
CONCEPT
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Procedure, Regimen
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
episode_type_concept_id
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
This field can be used to determine the provenance of the Episode record, as in whether the episode was from an EHR system, insurance claim, registry, or other sources.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
Choose the EPISODE_TYPE_CONCEPT_ID that best represents the provenance of the record. <a href="https://athena.ohdsi.org/search-terms/terms?domain=Type+Concept&standardConcept=Standard&page=1&pageSize=15&query=">Accepted Concepts</a>.
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
integer
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
CONCEPT
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Type Concept
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
episode_source_value
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
The source code for the Episdoe as it appears in the source data. This code is mapped to a Standard Condition Concept in the Standardized Vocabularies and the original code is stored here for reference.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
varchar(50)
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
episode_source_concept_id
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
A foreign key to a Episode Concept that refers to the code used in the source.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
Given that the Episodes are user-defined it is unlikely that there will be a Source Concept available. If that is the case then set this field to zero.
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
integer
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
CONCEPT
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
</tbody>
|
||||
</table>
|
||||
</div>
|
||||
<div id="episode_event" class="section level3 tabset tabset-pills">
|
||||
<h3 class="tabset tabset-pills">EPISODE_EVENT</h3>
|
||||
|
|
@ -918,134 +513,6 @@ CONCEPT
|
|||
<p>This connecting table is used instead of the FACT_RELATIONSHIP table for linking low-level events to abstracted Episodes.</p>
|
||||
<p><strong>ETL Conventions</strong></p>
|
||||
<p>Some episodes may not have links to any underlying clinical events. For such episodes, the EPISODE_EVENT table is not populated.</p>
|
||||
<table class="table table-condensed table-hover" style="font-size: 13px; margin-left: auto; margin-right: auto;">
|
||||
<thead>
|
||||
<tr>
|
||||
<th style="text-align:left;">
|
||||
CDM Field
|
||||
</th>
|
||||
<th style="text-align:left;width: 3in; ">
|
||||
User Guide
|
||||
</th>
|
||||
<th style="text-align:left;width: 4in; ">
|
||||
ETL Conventions
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
Datatype
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
Required
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
Primary Key
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
Foreign Key
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
FK Table
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
FK Domain
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
FK Class
|
||||
</th>
|
||||
</tr>
|
||||
</thead>
|
||||
<tbody>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
episode_id
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
Use this field to link the EPISODE_EVENT record to its EPISODE.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
Put the EPISODE_ID that subsumes the EPISODE_EVENT record here.
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
bigint
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
EPISODE
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
event_id
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
This field is the primary key of the linked record in the database. For example, if the Episode Event is a Condition Occurrence, then the CONDITION_OCCURRENCE_ID of the linked record goes in this field.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
Put the primary key of the linked record here.
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
bigint
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
episode_event_field_concept_id
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
This field is the CONCEPT_ID that identifies which table the primary key of the linked record came from.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
Put the CONCEPT_ID that identifies which table and field the EVENT_ID came from. <a href="https://athena.ohdsi.org/search-terms/terms?vocabulary=CDM&conceptClass=Field&page=1&pageSize=15&query=">Accepted Concepts</a>
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
integer
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
CONCEPT
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Metadata
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
</tbody>
|
||||
</table>
|
||||
</div>
|
||||
<div id="measurement" class="section level3 tabset tabset-pills">
|
||||
<h3 class="tabset tabset-pills">MEASUREMENT</h3>
|
||||
|
|
@ -1053,104 +520,6 @@ Metadata
|
|||
<p>The MEASUREMENT table contains records of Measurement, i.e. structured values (numerical or categorical) obtained through systematic and standardized examination or testing of a Person or Person’s sample. The MEASUREMENT table contains both orders and results of such Measurements as laboratory tests, vital signs, quantitative findings from pathology reports, etc. Measurements are stored as attribute value pairs, with the attribute as the Measurement Concept and the value representing the result. The value can be a Concept (stored in VALUE_AS_CONCEPT), or a numerical value (VALUE_AS_NUMBER) with a Unit (UNIT_CONCEPT_ID).</p>
|
||||
<p><strong>User Guide</strong></p>
|
||||
<p>Measurements differ from Observations in that they require a standardized test or some other activity to generate a quantitative or qualitative result.</p>
|
||||
<table class="table table-condensed table-hover" style="font-size: 13px; margin-left: auto; margin-right: auto;">
|
||||
<thead>
|
||||
<tr>
|
||||
<th style="text-align:left;">
|
||||
CDM Field
|
||||
</th>
|
||||
<th style="text-align:left;width: 3in; ">
|
||||
User Guide
|
||||
</th>
|
||||
<th style="text-align:left;width: 4in; ">
|
||||
ETL Conventions
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
Datatype
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
Required
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
Primary Key
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
Foreign Key
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
FK Table
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
FK Domain
|
||||
</th>
|
||||
<th style="text-align:left;width: 1in; ">
|
||||
FK Class
|
||||
</th>
|
||||
</tr>
|
||||
</thead>
|
||||
<tbody>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
modifier_of_event_id
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
If the Measurement record is related to another record in the database, this field is the primary key of the linked record.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
Put the primary key of the linked record, if applicable, here.
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
bigint
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td style="text-align:left;font-weight: bold;">
|
||||
modifier_of_field_concept_id
|
||||
</td>
|
||||
<td style="text-align:left;width: 3in; ">
|
||||
If the Measurement record is related to another record in the database, this field is the CONCEPT_ID that identifies which table the primary key of the linked record came from.
|
||||
</td>
|
||||
<td style="text-align:left;width: 4in; ">
|
||||
Put the CONCEPT_ID that identifies which table and field the MODIFIER_OF_EVENT_ID came from. <a href="https://athena.ohdsi.org/search-terms/terms?vocabulary=CDM&conceptClass=Field&page=1&pageSize=15&query=">Accepted Concepts</a>
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
integer
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
No
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Yes
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
CONCEPT
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
Metadata
|
||||
</td>
|
||||
<td style="text-align:left;width: 1in; ">
|
||||
</td>
|
||||
</tr>
|
||||
</tbody>
|
||||
</table>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
|
|
|
|||
|
|
@ -15,7 +15,7 @@
|
|||
|
||||
<title>Example_Queries</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
|
|
@ -62,6 +62,7 @@ if (window.hljs) {
|
|||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
|
@ -87,6 +88,9 @@ button.code-folding-btn:focus {
|
|||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
|
|
@ -238,7 +242,7 @@ $(document).ready(function () {
|
|||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
|
|
@ -254,7 +258,7 @@ $(document).ready(function () {
|
|||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
||||
|
|
@ -274,7 +278,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-list-alt"></span>
|
||||
|
||||
Conventions
|
||||
|
|
@ -294,7 +298,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
|
@ -312,7 +316,7 @@ $(document).ready(function () {
|
|||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
|
|
@ -325,19 +329,22 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -347,7 +354,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
|
@ -367,7 +374,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
|
@ -375,6 +382,9 @@ $(document).ready(function () {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -13,7 +13,7 @@
|
|||
|
||||
<title>CDM Proposals Under Review</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
|
|
@ -60,6 +60,7 @@ if (window.hljs) {
|
|||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
|
@ -85,6 +86,9 @@ button.code-folding-btn:focus {
|
|||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
|
|
@ -236,7 +240,7 @@ $(document).ready(function () {
|
|||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
|
|
@ -252,7 +256,7 @@ $(document).ready(function () {
|
|||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
||||
|
|
@ -272,7 +276,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-list-alt"></span>
|
||||
|
||||
Conventions
|
||||
|
|
@ -292,7 +296,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
|
@ -310,7 +314,7 @@ $(document).ready(function () {
|
|||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
|
|
@ -323,19 +327,22 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -345,7 +352,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
|
@ -365,7 +372,7 @@ $(document).ready(function () {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
|
@ -373,6 +380,9 @@ $(document).ready(function () {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -1,12 +0,0 @@
|
|||
// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
|
||||
// be compatible with the behavior of Pandoc < 2.8).
|
||||
document.addEventListener('DOMContentLoaded', function(e) {
|
||||
var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
|
||||
var i, h, a;
|
||||
for (i = 0; i < hs.length; i++) {
|
||||
h = hs[i];
|
||||
if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6
|
||||
a = h.attributes;
|
||||
while (a.length > 0) h.removeAttribute(a[0].name);
|
||||
}
|
||||
});
|
||||
|
|
@ -406,11 +406,14 @@ div.tocify {
|
|||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
|
|
@ -453,6 +456,9 @@ div.tocify {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
@ -702,7 +708,7 @@ GROUP BY person_id
|
|||
</div>
|
||||
<div id="drug-eras" class="section level3">
|
||||
<h3>Drug Eras</h3>
|
||||
<p>If the DRUG_EXPOSURE table is populated this script will string together periods of time that a person is exposed to an active drug ingredient, allowing for 30 gaps in between. It will then insert the resulting era records into the DRUG_ERA table. <strong>NOTE</strong> This query only works with 5.3 and below.</p>
|
||||
<p>If the DRUG_EXPOSURE table is populated this script will string together periods of time that a person is exposed to an active drug ingredient, allowing for 30 gaps in between. It will then insert the resulting era records into the DRUG_ERA table. <strong>NOTE</strong> This query only works with the <strong>version 5</strong> series and below.</p>
|
||||
<pre class="sql"><code>
|
||||
-- Code taken from:
|
||||
-- https://github.com/OHDSI/ETL-CMS/blob/master/SQL/create_CDMv5_drug_era_non_stockpile.sql
|
||||
|
|
|
|||
|
|
@ -0,0 +1,469 @@
|
|||
<!DOCTYPE html>
|
||||
|
||||
<html>
|
||||
|
||||
<head>
|
||||
|
||||
<meta charset="utf-8" />
|
||||
<meta name="generator" content="pandoc" />
|
||||
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
|
||||
|
||||
|
||||
|
||||
|
||||
<title>Local Data</title>
|
||||
|
||||
<script src="site_libs/header-attrs-2.13/header-attrs.js"></script>
|
||||
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
||||
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
||||
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
|
||||
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
|
||||
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
|
||||
<style>h1 {font-size: 34px;}
|
||||
h1.title {font-size: 38px;}
|
||||
h2 {font-size: 30px;}
|
||||
h3 {font-size: 24px;}
|
||||
h4 {font-size: 18px;}
|
||||
h5 {font-size: 16px;}
|
||||
h6 {font-size: 12px;}
|
||||
code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
|
||||
pre:not([class]) { background-color: white }</style>
|
||||
<script src="site_libs/navigation-1.1/tabsets.js"></script>
|
||||
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
|
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<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
|
||||
<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
|
||||
<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />
|
||||
<link rel='shortcut icon' type='image/x-icon' href='favicon.ico' />
|
||||
|
||||
<style type="text/css">
|
||||
code{white-space: pre-wrap;}
|
||||
span.smallcaps{font-variant: small-caps;}
|
||||
span.underline{text-decoration: underline;}
|
||||
div.column{display: inline-block; vertical-align: top; width: 50%;}
|
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div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
|
||||
ul.task-list{list-style: none;}
|
||||
</style>
|
||||
|
||||
<style type="text/css">code{white-space: pre;}</style>
|
||||
<script type="text/javascript">
|
||||
if (window.hljs) {
|
||||
hljs.configure({languages: []});
|
||||
hljs.initHighlightingOnLoad();
|
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if (document.readyState && document.readyState === "complete") {
|
||||
window.setTimeout(function() { hljs.initHighlighting(); }, 0);
|
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}
|
||||
}
|
||||
</script>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="style.css" type="text/css" />
|
||||
|
||||
|
||||
|
||||
<style type = "text/css">
|
||||
.main-container {
|
||||
max-width: 940px;
|
||||
margin-left: auto;
|
||||
margin-right: auto;
|
||||
}
|
||||
img {
|
||||
max-width:100%;
|
||||
}
|
||||
.tabbed-pane {
|
||||
padding-top: 12px;
|
||||
}
|
||||
.html-widget {
|
||||
margin-bottom: 20px;
|
||||
}
|
||||
button.code-folding-btn:focus {
|
||||
outline: none;
|
||||
}
|
||||
summary {
|
||||
display: list-item;
|
||||
}
|
||||
details > summary > p:only-child {
|
||||
display: inline;
|
||||
}
|
||||
pre code {
|
||||
padding: 0;
|
||||
}
|
||||
</style>
|
||||
|
||||
|
||||
<style type="text/css">
|
||||
.dropdown-submenu {
|
||||
position: relative;
|
||||
}
|
||||
.dropdown-submenu>.dropdown-menu {
|
||||
top: 0;
|
||||
left: 100%;
|
||||
margin-top: -6px;
|
||||
margin-left: -1px;
|
||||
border-radius: 0 6px 6px 6px;
|
||||
}
|
||||
.dropdown-submenu:hover>.dropdown-menu {
|
||||
display: block;
|
||||
}
|
||||
.dropdown-submenu>a:after {
|
||||
display: block;
|
||||
content: " ";
|
||||
float: right;
|
||||
width: 0;
|
||||
height: 0;
|
||||
border-color: transparent;
|
||||
border-style: solid;
|
||||
border-width: 5px 0 5px 5px;
|
||||
border-left-color: #cccccc;
|
||||
margin-top: 5px;
|
||||
margin-right: -10px;
|
||||
}
|
||||
.dropdown-submenu:hover>a:after {
|
||||
border-left-color: #adb5bd;
|
||||
}
|
||||
.dropdown-submenu.pull-left {
|
||||
float: none;
|
||||
}
|
||||
.dropdown-submenu.pull-left>.dropdown-menu {
|
||||
left: -100%;
|
||||
margin-left: 10px;
|
||||
border-radius: 6px 0 6px 6px;
|
||||
}
|
||||
</style>
|
||||
|
||||
<script type="text/javascript">
|
||||
// manage active state of menu based on current page
|
||||
$(document).ready(function () {
|
||||
// active menu anchor
|
||||
href = window.location.pathname
|
||||
href = href.substr(href.lastIndexOf('/') + 1)
|
||||
if (href === "")
|
||||
href = "index.html";
|
||||
var menuAnchor = $('a[href="' + href + '"]');
|
||||
|
||||
// mark it active
|
||||
menuAnchor.tab('show');
|
||||
|
||||
// if it's got a parent navbar menu mark it active as well
|
||||
menuAnchor.closest('li.dropdown').addClass('active');
|
||||
|
||||
// Navbar adjustments
|
||||
var navHeight = $(".navbar").first().height() + 15;
|
||||
var style = document.createElement('style');
|
||||
var pt = "padding-top: " + navHeight + "px; ";
|
||||
var mt = "margin-top: -" + navHeight + "px; ";
|
||||
var css = "";
|
||||
// offset scroll position for anchor links (for fixed navbar)
|
||||
for (var i = 1; i <= 6; i++) {
|
||||
css += ".section h" + i + "{ " + pt + mt + "}\n";
|
||||
}
|
||||
style.innerHTML = "body {" + pt + "padding-bottom: 40px; }\n" + css;
|
||||
document.head.appendChild(style);
|
||||
});
|
||||
</script>
|
||||
|
||||
<!-- tabsets -->
|
||||
|
||||
<style type="text/css">
|
||||
.tabset-dropdown > .nav-tabs {
|
||||
display: inline-table;
|
||||
max-height: 500px;
|
||||
min-height: 44px;
|
||||
overflow-y: auto;
|
||||
border: 1px solid #ddd;
|
||||
border-radius: 4px;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs > li.active:before {
|
||||
content: "";
|
||||
font-family: 'Glyphicons Halflings';
|
||||
display: inline-block;
|
||||
padding: 10px;
|
||||
border-right: 1px solid #ddd;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
|
||||
content: "";
|
||||
border: none;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
|
||||
content: "";
|
||||
font-family: 'Glyphicons Halflings';
|
||||
display: inline-block;
|
||||
padding: 10px;
|
||||
border-right: 1px solid #ddd;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs > li.active {
|
||||
display: block;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs > li > a,
|
||||
.tabset-dropdown > .nav-tabs > li > a:focus,
|
||||
.tabset-dropdown > .nav-tabs > li > a:hover {
|
||||
border: none;
|
||||
display: inline-block;
|
||||
border-radius: 4px;
|
||||
background-color: transparent;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
|
||||
display: block;
|
||||
float: none;
|
||||
}
|
||||
|
||||
.tabset-dropdown > .nav-tabs > li {
|
||||
display: none;
|
||||
}
|
||||
</style>
|
||||
|
||||
<!-- code folding -->
|
||||
|
||||
|
||||
|
||||
|
||||
</head>
|
||||
|
||||
<body>
|
||||
|
||||
|
||||
<div class="container-fluid main-container">
|
||||
|
||||
|
||||
|
||||
|
||||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
<span class="icon-bar"></span>
|
||||
</button>
|
||||
<a class="navbar-brand" href="index.html"><div><img src="ohdsi16x16.png"></img> OMOP Common Data Model </div></a>
|
||||
</div>
|
||||
<div id="navbar" class="navbar-collapse collapse">
|
||||
<ul class="nav navbar-nav">
|
||||
<li>
|
||||
<a href="index.html">
|
||||
<span class="fa fa-home"></span>
|
||||
|
||||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-landmark"></span>
|
||||
|
||||
Background
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="background.html">Model Background</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="cdmRefreshProcess.html">CDM Refresh Process</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="vocabulary.html">How the Vocabulary is Built</a>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-list-alt"></span>
|
||||
|
||||
Conventions
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="dataModelConventions.html">General Conventions</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="ehrObsPeriods.html">Observation Periods for EHR Data</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="cdmPrivacy.html">Patient Privacy and OMOP</a>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm30.html">CDM v3.0</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="cdm60.html">CDM v6.0</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="cdm54Changes.html">Changes from CDM v5.3</a>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="download.html">Download the DDL</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="cdmRPackage.html">Use the CDM R Package</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="drug_dose.html">Calculate Drug Dose</a>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="sqlScripts.html">SQL Scripts</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="contribute.html">Ask a Question</a>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<ul class="nav navbar-nav navbar-right">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel">
|
||||
<span class="fa fa-github"></span>
|
||||
|
||||
</a>
|
||||
</li>
|
||||
</ul>
|
||||
</div><!--/.nav-collapse -->
|
||||
</div><!--/.container -->
|
||||
</div><!--/.navbar -->
|
||||
|
||||
<div id="header">
|
||||
|
||||
|
||||
|
||||
<h1 class="title toc-ignore">Local Data</h1>
|
||||
|
||||
</div>
|
||||
|
||||
|
||||
<p>Okay, so you don’t have a network use case. <strong>Is this data element specific to your data source, or are there others in the community who might also have this data but don’t yet need it for a study or data model convention?</strong></p>
|
||||
<p><a href="localChange.html">Yes, this element is specific to my data source</a></p>
|
||||
<p><a href="leaveAsIs.html">No, there are others in the community who also have this data</a></p>
|
||||
|
||||
|
||||
|
||||
|
||||
</div>
|
||||
|
||||
<script>
|
||||
|
||||
// add bootstrap table styles to pandoc tables
|
||||
function bootstrapStylePandocTables() {
|
||||
$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
|
||||
}
|
||||
$(document).ready(function () {
|
||||
bootstrapStylePandocTables();
|
||||
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|
||||
|
||||
<p>Great, you have a network use case!</p>
|
||||
<p>Next question: <strong>Is there an existing OMOP vocabulary to support this new element? If you are unsure, feel free to check <a href="https://athena.ohdsi.org/search-terms/terms?query">Athena</a>.</strong></p>
|
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<p><a href="vocabY.html">Yes, I have all the required vocabulary I need</a></p>
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<h1 class="title toc-ignore">Open Source Vocabulary</h1>
|
||||
|
||||
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|
||||
|
||||
|
||||
<p>Okay, so you have a use case but you don’t have an OMOP vocabulary to support your need. <strong>Is there an existing open-source (not proprietary or custom) vocabulary that has not yet been incorporated into the OMOP vocabulary?</strong></p>
|
||||
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|
||||
<p><a href="contactVocab.html">No, there is no open-source vocabulary for this data element</a></p>
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|
||||
<p>Okay so you have something you would like to add to the CDM and there is an existing OMOP vocabulary we can bring in to support it. <strong>In this case, please open an issue on the vocabulary github with the details of what you need added</strong> as data elements in the CDM must have a vocabulary in place before they can be implemented. The team will follow up with you should they need additional information.</p>
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|
||||
|
||||
|
||||
<p>Great, so you have a network use case and an existing OMOP Vocabulary! <strong>From here, please follow the steps to formally request a change to the OMOP Common Data Model.</strong></p>
|
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<title>How the Vocabulary is Built</title>
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@ -88,6 +89,9 @@ button.code-folding-btn:focus {
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|
@ -368,7 +372,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-history"></span>
|
||||
|
||||
CDM Versions
|
||||
|
|
@ -386,7 +390,7 @@ div.tocify {
|
|||
<a href="cdm53.html">CDM v5.3</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdm54.html">CDM v5.4</a>
|
||||
|
|
@ -399,19 +403,22 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-plus-square"></span>
|
||||
|
||||
Proposals
|
||||
CDM Proposals
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
||||
</li>
|
||||
<li class="dropdown-submenu">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Accepted</a>
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
||||
|
|
@ -421,7 +428,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-question"></span>
|
||||
|
||||
How to
|
||||
|
|
@ -441,7 +448,7 @@ div.tocify {
|
|||
</ul>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
||||
<span class="fa fa-life-ring"></span>
|
||||
|
||||
Support
|
||||
|
|
@ -449,6 +456,9 @@ div.tocify {
|
|||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="faq.html">FAQ</a>
|
||||
</li>
|
||||
|
|
|
|||
|
|
@ -7,7 +7,7 @@ cdmVersion <- "5.4"
|
|||
supportedVersions <- CommonDataModel::listSupportedVersions()
|
||||
|
||||
for (cdmVersion in supportedVersions) {
|
||||
for (targetDialect in c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark")) {
|
||||
for (targetDialect in c("oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server", "spark", "snowflake")) {
|
||||
CommonDataModel::writeDdl(targetDialect = targetDialect,
|
||||
cdmVersion = cdmVersion)
|
||||
|
||||
|
|
|
|||
|
|
@ -0,0 +1,158 @@
|
|||
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_gender_concept_id FOREIGN KEY (gender_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_race_concept_id FOREIGN KEY (race_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_ethnicity_concept_id FOREIGN KEY (ethnicity_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_location_id FOREIGN KEY (location_id) REFERENCES LOCATION (LOCATION_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_race_source_concept_id FOREIGN KEY (race_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT fpk_PERSON_ethnicity_source_concept_id FOREIGN KEY (ethnicity_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.OBSERVATION_PERIOD ADD CONSTRAINT fpk_OBSERVATION_PERIOD_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.OBSERVATION_PERIOD ADD CONSTRAINT fpk_OBSERVATION_PERIOD_period_type_concept_id FOREIGN KEY (period_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_visit_concept_id FOREIGN KEY (visit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_visit_type_concept_id FOREIGN KEY (visit_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_visit_source_concept_id FOREIGN KEY (visit_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_admitting_source_concept_id FOREIGN KEY (admitting_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_discharge_to_concept_id FOREIGN KEY (discharge_to_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT fpk_VISIT_OCCURRENCE_preceding_visit_occurrence_id FOREIGN KEY (preceding_visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_visit_detail_concept_id FOREIGN KEY (visit_detail_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_visit_detail_type_concept_id FOREIGN KEY (visit_detail_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_visit_detail_source_concept_id FOREIGN KEY (visit_detail_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_admitting_source_concept_id FOREIGN KEY (admitting_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_discharge_to_concept_id FOREIGN KEY (discharge_to_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_preceding_visit_detail_id FOREIGN KEY (preceding_visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_visit_detail_parent_id FOREIGN KEY (visit_detail_parent_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT fpk_VISIT_DETAIL_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_condition_type_concept_id FOREIGN KEY (condition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_condition_status_concept_id FOREIGN KEY (condition_status_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT fpk_CONDITION_OCCURRENCE_condition_source_concept_id FOREIGN KEY (condition_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_drug_type_concept_id FOREIGN KEY (drug_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_route_concept_id FOREIGN KEY (route_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT fpk_DRUG_EXPOSURE_drug_source_concept_id FOREIGN KEY (drug_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_procedure_concept_id FOREIGN KEY (procedure_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_procedure_type_concept_id FOREIGN KEY (procedure_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT fpk_PROCEDURE_OCCURRENCE_modifier_concept_id FOREIGN KEY (modifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_concept_id FOREIGN KEY (device_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_type_concept_id FOREIGN KEY (device_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT fpk_DEVICE_EXPOSURE_device_source_concept_id FOREIGN KEY (device_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_concept_id FOREIGN KEY (measurement_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_type_concept_id FOREIGN KEY (measurement_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_operator_concept_id FOREIGN KEY (operator_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT fpk_MEASUREMENT_measurement_source_concept_id FOREIGN KEY (measurement_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_observation_concept_id FOREIGN KEY (observation_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_observation_type_concept_id FOREIGN KEY (observation_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_qualifier_concept_id FOREIGN KEY (qualifier_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT fpk_OBSERVATION_observation_source_concept_id FOREIGN KEY (observation_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DEATH ADD CONSTRAINT fpk_DEATH_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DEATH ADD CONSTRAINT fpk_DEATH_death_type_concept_id FOREIGN KEY (death_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DEATH ADD CONSTRAINT fpk_DEATH_cause_concept_id FOREIGN KEY (cause_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DEATH ADD CONSTRAINT fpk_DEATH_cause_source_concept_id FOREIGN KEY (cause_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_type_concept_id FOREIGN KEY (note_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_note_class_concept_id FOREIGN KEY (note_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_encoding_concept_id FOREIGN KEY (encoding_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_language_concept_id FOREIGN KEY (language_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_provider_id FOREIGN KEY (provider_id) REFERENCES @cdmDatabaseSchema.PROVIDER (PROVIDER_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_occurrence_id FOREIGN KEY (visit_occurrence_id) REFERENCES @cdmDatabaseSchema.VISIT_OCCURRENCE (VISIT_OCCURRENCE_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT fpk_NOTE_visit_detail_id FOREIGN KEY (visit_detail_id) REFERENCES @cdmDatabaseSchema.VISIT_DETAIL (VISIT_DETAIL_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_section_concept_id FOREIGN KEY (section_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_note_nlp_concept_id FOREIGN KEY (note_nlp_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT fpk_NOTE_NLP_note_nlp_source_concept_id FOREIGN KEY (note_nlp_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_specimen_concept_id FOREIGN KEY (specimen_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_specimen_type_concept_id FOREIGN KEY (specimen_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_anatomic_site_concept_id FOREIGN KEY (anatomic_site_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.SPECIMEN ADD CONSTRAINT fpk_SPECIMEN_disease_status_concept_id FOREIGN KEY (disease_status_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_domain_concept_id_1 FOREIGN KEY (domain_concept_id_1) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_domain_concept_id_2 FOREIGN KEY (domain_concept_id_2) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP ADD CONSTRAINT fpk_FACT_RELATIONSHIP_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_place_of_service_concept_id FOREIGN KEY (place_of_service_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT fpk_CARE_SITE_location_id FOREIGN KEY (location_id) REFERENCES LOCATION (LOCATION_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_specialty_concept_id FOREIGN KEY (specialty_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_care_site_id FOREIGN KEY (care_site_id) REFERENCES @cdmDatabaseSchema.CARE_SITE (CARE_SITE_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_gender_concept_id FOREIGN KEY (gender_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_specialty_source_concept_id FOREIGN KEY (specialty_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT fpk_PROVIDER_gender_source_concept_id FOREIGN KEY (gender_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_plan_period_id FOREIGN KEY (payer_plan_period_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_concept_id FOREIGN KEY (payer_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_payer_source_concept_id FOREIGN KEY (payer_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_plan_concept_id FOREIGN KEY (plan_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_plan_source_concept_id FOREIGN KEY (plan_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_sponsor_concept_id FOREIGN KEY (sponsor_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_sponsor_source_concept_id FOREIGN KEY (sponsor_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_stop_reason_concept_id FOREIGN KEY (stop_reason_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT fpk_PAYER_PLAN_PERIOD_stop_reason_source_concept_id FOREIGN KEY (stop_reason_source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.COST ADD CONSTRAINT fpk_COST_cost_domain_id FOREIGN KEY (cost_domain_id) REFERENCES @cdmDatabaseSchema.DOMAIN (DOMAIN_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.COST ADD CONSTRAINT fpk_COST_cost_type_concept_id FOREIGN KEY (cost_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.COST ADD CONSTRAINT fpk_COST_currency_concept_id FOREIGN KEY (currency_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.COST ADD CONSTRAINT fpk_COST_revenue_code_concept_id FOREIGN KEY (revenue_code_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.COST ADD CONSTRAINT fpk_COST_drg_concept_id FOREIGN KEY (drg_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_ERA ADD CONSTRAINT fpk_DRUG_ERA_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_ERA ADD CONSTRAINT fpk_DRUG_ERA_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_person_id FOREIGN KEY (person_id) REFERENCES @cdmDatabaseSchema.PERSON (PERSON_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT fpk_DOSE_ERA_unit_concept_id FOREIGN KEY (unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT fpk_CONDITION_ERA_condition_concept_id FOREIGN KEY (condition_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_metadata_concept_id FOREIGN KEY (metadata_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_metadata_type_concept_id FOREIGN KEY (metadata_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.METADATA ADD CONSTRAINT fpk_METADATA_value_as_concept_id FOREIGN KEY (value_as_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_domain_id FOREIGN KEY (domain_id) REFERENCES @cdmDatabaseSchema.DOMAIN (DOMAIN_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_vocabulary_id FOREIGN KEY (vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT fpk_CONCEPT_concept_class_id FOREIGN KEY (concept_class_id) REFERENCES @cdmDatabaseSchema.CONCEPT_CLASS (CONCEPT_CLASS_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.VOCABULARY ADD CONSTRAINT fpk_VOCABULARY_vocabulary_concept_id FOREIGN KEY (vocabulary_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DOMAIN ADD CONSTRAINT fpk_DOMAIN_domain_concept_id FOREIGN KEY (domain_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONCEPT_CLASS ADD CONSTRAINT fpk_CONCEPT_CLASS_concept_class_concept_id FOREIGN KEY (concept_class_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONCEPT_RELATIONSHIP ADD CONSTRAINT fpk_CONCEPT_RELATIONSHIP_concept_id_1 FOREIGN KEY (concept_id_1) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONCEPT_RELATIONSHIP ADD CONSTRAINT fpk_CONCEPT_RELATIONSHIP_concept_id_2 FOREIGN KEY (concept_id_2) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONCEPT_RELATIONSHIP ADD CONSTRAINT fpk_CONCEPT_RELATIONSHIP_relationship_id FOREIGN KEY (relationship_id) REFERENCES @cdmDatabaseSchema.RELATIONSHIP (RELATIONSHIP_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.RELATIONSHIP ADD CONSTRAINT fpk_RELATIONSHIP_relationship_concept_id FOREIGN KEY (relationship_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONCEPT_SYNONYM ADD CONSTRAINT fpk_CONCEPT_SYNONYM_concept_id FOREIGN KEY (concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONCEPT_SYNONYM ADD CONSTRAINT fpk_CONCEPT_SYNONYM_language_concept_id FOREIGN KEY (language_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONCEPT_ANCESTOR ADD CONSTRAINT fpk_CONCEPT_ANCESTOR_ancestor_concept_id FOREIGN KEY (ancestor_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONCEPT_ANCESTOR ADD CONSTRAINT fpk_CONCEPT_ANCESTOR_descendant_concept_id FOREIGN KEY (descendant_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.SOURCE_TO_CONCEPT_MAP ADD CONSTRAINT fpk_SOURCE_TO_CONCEPT_MAP_source_concept_id FOREIGN KEY (source_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.SOURCE_TO_CONCEPT_MAP ADD CONSTRAINT fpk_SOURCE_TO_CONCEPT_MAP_target_concept_id FOREIGN KEY (target_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.SOURCE_TO_CONCEPT_MAP ADD CONSTRAINT fpk_SOURCE_TO_CONCEPT_MAP_target_vocabulary_id FOREIGN KEY (target_vocabulary_id) REFERENCES @cdmDatabaseSchema.VOCABULARY (VOCABULARY_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_drug_concept_id FOREIGN KEY (drug_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_ingredient_concept_id FOREIGN KEY (ingredient_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_amount_unit_concept_id FOREIGN KEY (amount_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_numerator_unit_concept_id FOREIGN KEY (numerator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_STRENGTH ADD CONSTRAINT fpk_DRUG_STRENGTH_denominator_unit_concept_id FOREIGN KEY (denominator_unit_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_definition_type_concept_id FOREIGN KEY (definition_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.COHORT_DEFINITION ADD CONSTRAINT fpk_COHORT_DEFINITION_subject_concept_id FOREIGN KEY (subject_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
ALTER TABLE @cdmDatabaseSchema.ATTRIBUTE_DEFINITION ADD CONSTRAINT fpk_ATTRIBUTE_DEFINITION_attribute_type_concept_id FOREIGN KEY (attribute_type_concept_id) REFERENCES @cdmDatabaseSchema.CONCEPT (CONCEPT_ID);
|
||||
|
|
@ -0,0 +1,481 @@
|
|||
--USE DATABASE snowflake54;
|
||||
|
||||
--CREATE OR REPLACE SCHEMA cdm54;
|
||||
|
||||
--snowflake CDM DDL Specification for OMOP Common Data Model 5.4
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.PERSON (
|
||||
person_id integer NOT NULL,
|
||||
gender_concept_id integer NOT NULL,
|
||||
year_of_birth integer NOT NULL,
|
||||
month_of_birth integer NULL,
|
||||
day_of_birth integer NULL,
|
||||
birth_datetime TIMESTAMP NULL,
|
||||
race_concept_id integer NOT NULL,
|
||||
ethnicity_concept_id integer NOT NULL,
|
||||
location_id integer NULL,
|
||||
provider_id integer NULL,
|
||||
care_site_id integer NULL,
|
||||
person_source_value varchar(50) NULL,
|
||||
gender_source_value varchar(50) NULL,
|
||||
gender_source_concept_id integer NULL,
|
||||
race_source_value varchar(50) NULL,
|
||||
race_source_concept_id integer NULL,
|
||||
ethnicity_source_value varchar(50) NULL,
|
||||
ethnicity_source_concept_id integer NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.OBSERVATION_PERIOD (
|
||||
observation_period_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
observation_period_start_date date NOT NULL,
|
||||
observation_period_end_date date NOT NULL,
|
||||
period_type_concept_id integer NOT NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE (
|
||||
visit_occurrence_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
visit_concept_id integer NOT NULL,
|
||||
visit_start_date date NOT NULL,
|
||||
visit_start_datetime TIMESTAMP NULL,
|
||||
visit_end_date date NOT NULL,
|
||||
visit_end_datetime TIMESTAMP NULL,
|
||||
visit_type_concept_id Integer NOT NULL,
|
||||
provider_id integer NULL,
|
||||
care_site_id integer NULL,
|
||||
visit_source_value varchar(50) NULL,
|
||||
visit_source_concept_id integer NULL,
|
||||
admitting_source_concept_id integer NULL,
|
||||
admitting_source_value varchar(50) NULL,
|
||||
discharge_to_concept_id integer NULL,
|
||||
discharge_to_source_value varchar(50) NULL,
|
||||
preceding_visit_occurrence_id integer NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.VISIT_DETAIL (
|
||||
visit_detail_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
visit_detail_concept_id integer NOT NULL,
|
||||
visit_detail_start_date date NOT NULL,
|
||||
visit_detail_start_datetime TIMESTAMP NULL,
|
||||
visit_detail_end_date date NOT NULL,
|
||||
visit_detail_end_datetime TIMESTAMP NULL,
|
||||
visit_detail_type_concept_id integer NOT NULL,
|
||||
provider_id integer NULL,
|
||||
care_site_id integer NULL,
|
||||
visit_detail_source_value varchar(50) NULL,
|
||||
visit_detail_source_concept_id Integer NULL,
|
||||
admitting_source_value Varchar(50) NULL,
|
||||
admitting_source_concept_id Integer NULL,
|
||||
discharge_to_source_value Varchar(50) NULL,
|
||||
discharge_to_concept_id integer NULL,
|
||||
preceding_visit_detail_id integer NULL,
|
||||
visit_detail_parent_id integer NULL,
|
||||
visit_occurrence_id integer NOT NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE (
|
||||
condition_occurrence_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
condition_concept_id integer NOT NULL,
|
||||
condition_start_date date NOT NULL,
|
||||
condition_start_datetime TIMESTAMP NULL,
|
||||
condition_end_date date NULL,
|
||||
condition_end_datetime TIMESTAMP NULL,
|
||||
condition_type_concept_id integer NOT NULL,
|
||||
condition_status_concept_id integer NULL,
|
||||
stop_reason varchar(20) NULL,
|
||||
provider_id integer NULL,
|
||||
visit_occurrence_id integer NULL,
|
||||
visit_detail_id integer NULL,
|
||||
condition_source_value varchar(50) NULL,
|
||||
condition_source_concept_id integer NULL,
|
||||
condition_status_source_value varchar(50) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.DRUG_EXPOSURE (
|
||||
drug_exposure_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
drug_concept_id integer NOT NULL,
|
||||
drug_exposure_start_date date NOT NULL,
|
||||
drug_exposure_start_datetime TIMESTAMP NULL,
|
||||
drug_exposure_end_date date NOT NULL,
|
||||
drug_exposure_end_datetime TIMESTAMP NULL,
|
||||
verbatim_end_date date NULL,
|
||||
drug_type_concept_id integer NOT NULL,
|
||||
stop_reason varchar(20) NULL,
|
||||
refills integer NULL,
|
||||
quantity NUMERIC NULL,
|
||||
days_supply integer NULL,
|
||||
sig TEXT NULL,
|
||||
route_concept_id integer NULL,
|
||||
lot_number varchar(50) NULL,
|
||||
provider_id integer NULL,
|
||||
visit_occurrence_id integer NULL,
|
||||
visit_detail_id integer NULL,
|
||||
drug_source_value varchar(50) NULL,
|
||||
drug_source_concept_id integer NULL,
|
||||
route_source_value varchar(50) NULL,
|
||||
dose_unit_source_value varchar(50) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE (
|
||||
procedure_occurrence_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
procedure_concept_id integer NOT NULL,
|
||||
procedure_date date NOT NULL,
|
||||
procedure_datetime TIMESTAMP NULL,
|
||||
procedure_type_concept_id integer NOT NULL,
|
||||
modifier_concept_id integer NULL,
|
||||
quantity integer NULL,
|
||||
provider_id integer NULL,
|
||||
visit_occurrence_id integer NULL,
|
||||
visit_detail_id integer NULL,
|
||||
procedure_source_value varchar(50) NULL,
|
||||
procedure_source_concept_id integer NULL,
|
||||
modifier_source_value varchar(50) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE (
|
||||
device_exposure_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
device_concept_id integer NOT NULL,
|
||||
device_exposure_start_date date NOT NULL,
|
||||
device_exposure_start_datetime TIMESTAMP NULL,
|
||||
device_exposure_end_date date NULL,
|
||||
device_exposure_end_datetime TIMESTAMP NULL,
|
||||
device_type_concept_id integer NOT NULL,
|
||||
unique_device_id varchar(50) NULL,
|
||||
quantity integer NULL,
|
||||
provider_id integer NULL,
|
||||
visit_occurrence_id integer NULL,
|
||||
visit_detail_id integer NULL,
|
||||
device_source_value varchar(50) NULL,
|
||||
device_source_concept_id integer NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.MEASUREMENT (
|
||||
measurement_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
measurement_concept_id integer NOT NULL,
|
||||
measurement_date date NOT NULL,
|
||||
measurement_datetime TIMESTAMP NULL,
|
||||
measurement_time varchar(10) NULL,
|
||||
measurement_type_concept_id integer NOT NULL,
|
||||
operator_concept_id integer NULL,
|
||||
value_as_number NUMERIC NULL,
|
||||
value_as_concept_id integer NULL,
|
||||
unit_concept_id integer NULL,
|
||||
range_low NUMERIC NULL,
|
||||
range_high NUMERIC NULL,
|
||||
provider_id integer NULL,
|
||||
visit_occurrence_id integer NULL,
|
||||
visit_detail_id integer NULL,
|
||||
measurement_source_value varchar(50) NULL,
|
||||
measurement_source_concept_id integer NULL,
|
||||
unit_source_value varchar(50) NULL,
|
||||
value_source_value varchar(50) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.OBSERVATION (
|
||||
observation_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
observation_concept_id integer NOT NULL,
|
||||
observation_date date NOT NULL,
|
||||
observation_datetime TIMESTAMP NULL,
|
||||
observation_type_concept_id integer NOT NULL,
|
||||
value_as_number NUMERIC NULL,
|
||||
value_as_string varchar(60) NULL,
|
||||
value_as_concept_id Integer NULL,
|
||||
qualifier_concept_id integer NULL,
|
||||
unit_concept_id integer NULL,
|
||||
provider_id integer NULL,
|
||||
visit_occurrence_id integer NULL,
|
||||
visit_detail_id integer NULL,
|
||||
observation_source_value varchar(50) NULL,
|
||||
observation_source_concept_id integer NULL,
|
||||
unit_source_value varchar(50) NULL,
|
||||
qualifier_source_value varchar(50) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.DEATH (
|
||||
person_id integer NOT NULL,
|
||||
death_date date NOT NULL,
|
||||
death_datetime TIMESTAMP NULL,
|
||||
death_type_concept_id integer NULL,
|
||||
cause_concept_id integer NULL,
|
||||
cause_source_value varchar(50) NULL,
|
||||
cause_source_concept_id integer NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.NOTE (
|
||||
note_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
note_date date NOT NULL,
|
||||
note_datetime TIMESTAMP NULL,
|
||||
note_type_concept_id integer NOT NULL,
|
||||
note_class_concept_id integer NOT NULL,
|
||||
note_title varchar(250) NULL,
|
||||
note_text TEXT NOT NULL,
|
||||
encoding_concept_id integer NOT NULL,
|
||||
language_concept_id integer NOT NULL,
|
||||
provider_id integer NULL,
|
||||
visit_occurrence_id integer NULL,
|
||||
visit_detail_id integer NULL,
|
||||
note_source_value varchar(50) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.NOTE_NLP (
|
||||
note_nlp_id integer NOT NULL,
|
||||
note_id integer NOT NULL,
|
||||
section_concept_id integer NULL,
|
||||
snippet varchar(250) NULL,
|
||||
"offset" varchar(50) NULL,
|
||||
lexical_variant varchar(250) NOT NULL,
|
||||
note_nlp_concept_id integer NULL,
|
||||
note_nlp_source_concept_id integer NULL,
|
||||
nlp_system varchar(250) NULL,
|
||||
nlp_date date NOT NULL,
|
||||
nlp_datetime TIMESTAMP NULL,
|
||||
term_exists varchar(1) NULL,
|
||||
term_temporal varchar(50) NULL,
|
||||
term_modifiers varchar(2000) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.SPECIMEN (
|
||||
specimen_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
specimen_concept_id integer NOT NULL,
|
||||
specimen_type_concept_id integer NOT NULL,
|
||||
specimen_date date NOT NULL,
|
||||
specimen_datetime TIMESTAMP NULL,
|
||||
quantity NUMERIC NULL,
|
||||
unit_concept_id integer NULL,
|
||||
anatomic_site_concept_id integer NULL,
|
||||
disease_status_concept_id integer NULL,
|
||||
specimen_source_id varchar(50) NULL,
|
||||
specimen_source_value varchar(50) NULL,
|
||||
unit_source_value varchar(50) NULL,
|
||||
anatomic_site_source_value varchar(50) NULL,
|
||||
disease_status_source_value varchar(50) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.FACT_RELATIONSHIP (
|
||||
domain_concept_id_1 integer NOT NULL,
|
||||
fact_id_1 integer NOT NULL,
|
||||
domain_concept_id_2 integer NOT NULL,
|
||||
fact_id_2 integer NOT NULL,
|
||||
relationship_concept_id integer NOT NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.LOCATION (
|
||||
location_id integer NOT NULL,
|
||||
address_1 varchar(50) NULL,
|
||||
address_2 varchar(50) NULL,
|
||||
city varchar(50) NULL,
|
||||
state varchar(2) NULL,
|
||||
zip varchar(9) NULL,
|
||||
county varchar(20) NULL,
|
||||
location_source_value varchar(50) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.CARE_SITE (
|
||||
care_site_id integer NOT NULL,
|
||||
care_site_name varchar(255) NULL,
|
||||
place_of_service_concept_id integer NULL,
|
||||
location_id integer NULL,
|
||||
care_site_source_value varchar(50) NULL,
|
||||
place_of_service_source_value varchar(50) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.PROVIDER (
|
||||
provider_id integer NOT NULL,
|
||||
provider_name varchar(255) NULL,
|
||||
npi varchar(20) NULL,
|
||||
dea varchar(20) NULL,
|
||||
specialty_concept_id integer NULL,
|
||||
care_site_id integer NULL,
|
||||
year_of_birth integer NULL,
|
||||
gender_concept_id integer NULL,
|
||||
provider_source_value varchar(50) NULL,
|
||||
specialty_source_value varchar(50) NULL,
|
||||
specialty_source_concept_id integer NULL,
|
||||
gender_source_value varchar(50) NULL,
|
||||
gender_source_concept_id integer NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD (
|
||||
payer_plan_period_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
payer_plan_period_start_date date NOT NULL,
|
||||
payer_plan_period_end_date date NOT NULL,
|
||||
payer_concept_id integer NULL,
|
||||
payer_source_value varchar(50) NULL,
|
||||
payer_source_concept_id integer NULL,
|
||||
plan_concept_id integer NULL,
|
||||
plan_source_value varchar(50) NULL,
|
||||
plan_source_concept_id integer NULL,
|
||||
sponsor_concept_id integer NULL,
|
||||
sponsor_source_value varchar(50) NULL,
|
||||
sponsor_source_concept_id integer NULL,
|
||||
family_source_value varchar(50) NULL,
|
||||
stop_reason_concept_id integer NULL,
|
||||
stop_reason_source_value varchar(50) NULL,
|
||||
stop_reason_source_concept_id integer NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.COST (
|
||||
cost_id integer NOT NULL,
|
||||
cost_event_id integer NOT NULL,
|
||||
cost_domain_id varchar(20) NOT NULL,
|
||||
cost_type_concept_id integer NOT NULL,
|
||||
currency_concept_id integer NULL,
|
||||
total_charge NUMERIC NULL,
|
||||
total_cost NUMERIC NULL,
|
||||
total_paid NUMERIC NULL,
|
||||
paid_by_payer NUMERIC NULL,
|
||||
paid_by_patient NUMERIC NULL,
|
||||
paid_patient_copay NUMERIC NULL,
|
||||
paid_patient_coinsurance NUMERIC NULL,
|
||||
paid_patient_deductible NUMERIC NULL,
|
||||
paid_by_primary NUMERIC NULL,
|
||||
paid_ingredient_cost NUMERIC NULL,
|
||||
paid_dispensing_fee NUMERIC NULL,
|
||||
payer_plan_period_id integer NULL,
|
||||
amount_allowed NUMERIC NULL,
|
||||
revenue_code_concept_id integer NULL,
|
||||
revenue_code_source_value varchar(50) NULL,
|
||||
drg_concept_id integer NULL,
|
||||
drg_source_value varchar(3) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.DRUG_ERA (
|
||||
drug_era_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
drug_concept_id integer NOT NULL,
|
||||
drug_era_start_date TIMESTAMP NOT NULL,
|
||||
drug_era_end_date TIMESTAMP NOT NULL,
|
||||
drug_exposure_count integer NULL,
|
||||
gap_days integer NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.DOSE_ERA (
|
||||
dose_era_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
drug_concept_id integer NOT NULL,
|
||||
unit_concept_id integer NOT NULL,
|
||||
dose_value NUMERIC NOT NULL,
|
||||
dose_era_start_date TIMESTAMP NOT NULL,
|
||||
dose_era_end_date TIMESTAMP NOT NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.CONDITION_ERA (
|
||||
condition_era_id integer NOT NULL,
|
||||
person_id integer NOT NULL,
|
||||
condition_concept_id integer NOT NULL,
|
||||
condition_era_start_date TIMESTAMP NOT NULL,
|
||||
condition_era_end_date TIMESTAMP NOT NULL,
|
||||
condition_occurrence_count integer NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.METADATA (
|
||||
metadata_concept_id integer NOT NULL,
|
||||
metadata_type_concept_id integer NOT NULL,
|
||||
name varchar(250) NOT NULL,
|
||||
value_as_string varchar(250) NULL,
|
||||
value_as_concept_id integer NULL,
|
||||
metadata_date date NULL,
|
||||
metadata_datetime TIMESTAMP NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.CDM_SOURCE (
|
||||
cdm_source_name varchar(255) NOT NULL,
|
||||
cdm_source_abbreviation varchar(25) NULL,
|
||||
cdm_holder varchar(255) NULL,
|
||||
source_description TEXT NULL,
|
||||
source_documentation_reference varchar(255) NULL,
|
||||
cdm_etl_reference varchar(255) NULL,
|
||||
source_release_date date NULL,
|
||||
cdm_release_date date NULL,
|
||||
cdm_version varchar(10) NULL,
|
||||
vocabulary_version varchar(20) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.CONCEPT (
|
||||
concept_id integer NOT NULL,
|
||||
concept_name varchar(255) NOT NULL,
|
||||
domain_id varchar(20) NOT NULL,
|
||||
vocabulary_id varchar(20) NOT NULL,
|
||||
concept_class_id varchar(20) NOT NULL,
|
||||
standard_concept varchar(1) NULL,
|
||||
concept_code varchar(50) NOT NULL,
|
||||
valid_start_date date NOT NULL,
|
||||
valid_end_date date NOT NULL,
|
||||
invalid_reason varchar(1) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.VOCABULARY (
|
||||
vocabulary_id varchar(20) NOT NULL,
|
||||
vocabulary_name varchar(255) NOT NULL,
|
||||
vocabulary_reference varchar(255) NOT NULL,
|
||||
vocabulary_version varchar(255) NULL,
|
||||
vocabulary_concept_id integer NOT NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.DOMAIN (
|
||||
domain_id varchar(20) NOT NULL,
|
||||
domain_name varchar(255) NOT NULL,
|
||||
domain_concept_id integer NOT NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.CONCEPT_CLASS (
|
||||
concept_class_id varchar(20) NOT NULL,
|
||||
concept_class_name varchar(255) NOT NULL,
|
||||
concept_class_concept_id integer NOT NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.CONCEPT_RELATIONSHIP (
|
||||
concept_id_1 integer NOT NULL,
|
||||
concept_id_2 integer NOT NULL,
|
||||
relationship_id varchar(20) NOT NULL,
|
||||
valid_start_date date NOT NULL,
|
||||
valid_end_date date NOT NULL,
|
||||
invalid_reason varchar(1) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.RELATIONSHIP (
|
||||
relationship_id varchar(20) NOT NULL,
|
||||
relationship_name varchar(255) NOT NULL,
|
||||
is_hierarchical varchar(1) NOT NULL,
|
||||
defines_ancestry varchar(1) NOT NULL,
|
||||
reverse_relationship_id varchar(20) NOT NULL,
|
||||
relationship_concept_id integer NOT NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.CONCEPT_SYNONYM (
|
||||
concept_id integer NOT NULL,
|
||||
concept_synonym_name varchar(1000) NOT NULL,
|
||||
language_concept_id integer NOT NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.CONCEPT_ANCESTOR (
|
||||
ancestor_concept_id integer NOT NULL,
|
||||
descendant_concept_id integer NOT NULL,
|
||||
min_levels_of_separation integer NOT NULL,
|
||||
max_levels_of_separation integer NOT NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.SOURCE_TO_CONCEPT_MAP (
|
||||
source_code varchar(50) NOT NULL,
|
||||
source_concept_id integer NOT NULL,
|
||||
source_vocabulary_id varchar(20) NOT NULL,
|
||||
source_code_description varchar(255) NULL,
|
||||
target_concept_id integer NOT NULL,
|
||||
target_vocabulary_id varchar(20) NOT NULL,
|
||||
valid_start_date date NOT NULL,
|
||||
valid_end_date date NOT NULL,
|
||||
invalid_reason varchar(1) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.DRUG_STRENGTH (
|
||||
drug_concept_id integer NOT NULL,
|
||||
ingredient_concept_id integer NOT NULL,
|
||||
amount_value NUMERIC NULL,
|
||||
amount_unit_concept_id integer NULL,
|
||||
numerator_value NUMERIC NULL,
|
||||
numerator_unit_concept_id integer NULL,
|
||||
denominator_value NUMERIC NULL,
|
||||
denominator_unit_concept_id integer NULL,
|
||||
box_size integer NULL,
|
||||
valid_start_date date NOT NULL,
|
||||
valid_end_date date NOT NULL,
|
||||
invalid_reason varchar(1) NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.COHORT_DEFINITION (
|
||||
cohort_definition_id integer NOT NULL,
|
||||
cohort_definition_name varchar(255) NOT NULL,
|
||||
cohort_definition_description TEXT NULL,
|
||||
definition_type_concept_id integer NOT NULL,
|
||||
cohort_definition_syntax TEXT NULL,
|
||||
subject_concept_id integer NOT NULL,
|
||||
cohort_initiation_date date NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.ATTRIBUTE_DEFINITION (
|
||||
attribute_definition_id integer NOT NULL,
|
||||
attribute_name varchar(255) NOT NULL,
|
||||
attribute_description TEXT NULL,
|
||||
attribute_type_concept_id integer NOT NULL,
|
||||
attribute_syntax TEXT NULL );
|
||||
|
||||
CREATE TABLE @cdmDatabaseSchema.COHORT (
|
||||
cohort_definition_id integer NOT NULL,
|
||||
subject_id integer NOT NULL,
|
||||
cohort_start_date date NOT NULL,
|
||||
cohort_end_date date NOT NULL );
|
||||
|
|
@ -0,0 +1 @@
|
|||
-- snowflake does not support indexes
|
||||
|
|
@ -0,0 +1,26 @@
|
|||
ALTER TABLE @cdmDatabaseSchema.PERSON ADD CONSTRAINT xpk_PERSON PRIMARY KEY (person_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.OBSERVATION_PERIOD ADD CONSTRAINT xpk_OBSERVATION_PERIOD PRIMARY KEY (observation_period_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_OCCURRENCE ADD CONSTRAINT xpk_VISIT_OCCURRENCE PRIMARY KEY (visit_occurrence_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.VISIT_DETAIL ADD CONSTRAINT xpk_VISIT_DETAIL PRIMARY KEY (visit_detail_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONDITION_OCCURRENCE ADD CONSTRAINT xpk_CONDITION_OCCURRENCE PRIMARY KEY (condition_occurrence_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_EXPOSURE ADD CONSTRAINT xpk_DRUG_EXPOSURE PRIMARY KEY (drug_exposure_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.PROCEDURE_OCCURRENCE ADD CONSTRAINT xpk_PROCEDURE_OCCURRENCE PRIMARY KEY (procedure_occurrence_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.DEVICE_EXPOSURE ADD CONSTRAINT xpk_DEVICE_EXPOSURE PRIMARY KEY (device_exposure_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.MEASUREMENT ADD CONSTRAINT xpk_MEASUREMENT PRIMARY KEY (measurement_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.OBSERVATION ADD CONSTRAINT xpk_OBSERVATION PRIMARY KEY (observation_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.NOTE ADD CONSTRAINT xpk_NOTE PRIMARY KEY (note_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.NOTE_NLP ADD CONSTRAINT xpk_NOTE_NLP PRIMARY KEY (note_nlp_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.SPECIMEN ADD CONSTRAINT xpk_SPECIMEN PRIMARY KEY (specimen_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.LOCATION ADD CONSTRAINT xpk_LOCATION PRIMARY KEY (location_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.CARE_SITE ADD CONSTRAINT xpk_CARE_SITE PRIMARY KEY (care_site_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.PROVIDER ADD CONSTRAINT xpk_PROVIDER PRIMARY KEY (provider_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.PAYER_PLAN_PERIOD ADD CONSTRAINT xpk_PAYER_PLAN_PERIOD PRIMARY KEY (payer_plan_period_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.COST ADD CONSTRAINT xpk_COST PRIMARY KEY (cost_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.DRUG_ERA ADD CONSTRAINT xpk_DRUG_ERA PRIMARY KEY (drug_era_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.DOSE_ERA ADD CONSTRAINT xpk_DOSE_ERA PRIMARY KEY (dose_era_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONDITION_ERA ADD CONSTRAINT xpk_CONDITION_ERA PRIMARY KEY (condition_era_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONCEPT ADD CONSTRAINT xpk_CONCEPT PRIMARY KEY (concept_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.VOCABULARY ADD CONSTRAINT xpk_VOCABULARY PRIMARY KEY (vocabulary_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.DOMAIN ADD CONSTRAINT xpk_DOMAIN PRIMARY KEY (domain_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.CONCEPT_CLASS ADD CONSTRAINT xpk_CONCEPT_CLASS PRIMARY KEY (concept_class_id);
|
||||
ALTER TABLE @cdmDatabaseSchema.RELATIONSHIP ADD CONSTRAINT xpk_RELATIONSHIP PRIMARY KEY (relationship_id);
|
||||
|
|
@ -1,2 +1,4 @@
|
|||
setwd("/Users/clairblacketer/Documents/Github/CommonDataModel/rmd")#
|
||||
rmarkdown::render_site()
|
||||
setwd("/Users/clairblacketer/Documents/Github/CommonDataModel/rmd")#
|
||||
rmarkdown::render_site()
|
||||
|
|
|
|||
|
|
@ -48,9 +48,11 @@ navbar:
|
|||
href: cdm54.html
|
||||
- text: "Changes from CDM v5.3"
|
||||
href: cdm54Changes.html
|
||||
- text: "Proposals"
|
||||
- text: "CDM Proposals"
|
||||
icon: fa-plus-square
|
||||
menu:
|
||||
- text: "How to Propose Changes to the CDM"
|
||||
href: cdmRequestProcess.html
|
||||
- text: "Under Review"
|
||||
href: https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal
|
||||
- text: "Accepted"
|
||||
|
|
@ -69,6 +71,8 @@ navbar:
|
|||
- text: "Support"
|
||||
icon: fa-life-ring
|
||||
menu:
|
||||
- text: "Help! My Data Doesn't Fit!"
|
||||
href: cdmDecisionTree.html
|
||||
- text: "FAQ"
|
||||
href: faq.html
|
||||
- text: "SQL Scripts"
|
||||
|
|
|
|||
|
|
@ -0,0 +1,13 @@
|
|||
---
|
||||
title: '<div><img src="ohdsi40x40.png"></img> CDM Request Decision Tree </div>'
|
||||
output:
|
||||
html_document
|
||||
---
|
||||
|
||||
If you have arrived to this page then you must be thinking **HELP! I have some data that doesn't fit in the CDM!** Never fear as this handy guide will point you in the right direction and all you have to do is answer a few questions.
|
||||
|
||||
**First things first, do you think you will need to change the OMOP Common Data Model itself or are you solely looking for vocabulary support?**
|
||||
|
||||
[I think I need to change the OMOP CDM](networkUseCase.html)
|
||||
|
||||
[I need vocabulary support](vocabN.html)
|
||||
|
|
@ -8,23 +8,25 @@ output:
|
|||
|
||||
The OMOP Common Data Model is managed by the OHDSI CDM Working Group. The formal remit of the CDM Working Group (WG) is to hear proposals for change, ratifying only those with valid use cases and data to support them. Then, once ratified, these proposals are incorporated into the next version of the CDM. In the past, this was done by the WG alone. The group would invite others from around the community to present use cases for change and suggestions for improvement. The WG would then vote on the proposals and a new CDM version would be released after a certain period of time or if enough proposals were voted in. This approach worked when the community was smaller but as it is growing rapidly the CDM WG needed to adapt the refresh cycle such that everyone has an opportunity to weigh in on the proposed changes.
|
||||
|
||||
Looking to make a change or addition to the OMOP CDM? Please answer the questions in the [decision tree](cdmDecisionTree.html) to point you in the right direction.
|
||||
|
||||
## CDM Refresh Cycle
|
||||
|
||||
|
||||
|
||||
### 1. Define New Version [Completed for v5.4]
|
||||
### 1. Define New Version
|
||||
|
||||
The image above describes the new CDM refresh cycle. It begins with **defining a new version**. This has been completed for the current cycle. Issues and proposals on the github were considered during a 4-hour workshop where it was decided the next CDM version will be CDM v5.4, building off of CDM v5.3. The group then participated in a rapid-fire voting activity to identify which changes should be incorporated into CDM v5.4. Any items that were not unanimously agreed upon were then discussed in small groups to hone the proposal and suggestions were presented back to the group. The final roadmap for CDM v5.4 can be found [here](https://github.com/OHDSI/CommonDataModel/projects/3).
|
||||
The image above describes the new CDM refresh cycle. It begins with **defining a new version**. Proposals are heard over the course of a year according to the [CDM Request Process](cdmRequestProcess.html) and the ratified changes are added to the roadmap until such time that there are enough updates to warrant a new version of the model.
|
||||
|
||||
Looking to open a proposal to change or augment the CDM? Please open an [issue](https://github.com/OHDSI/CommonDataModel/issues) and use the **proposal template**.
|
||||
Looking to open a proposal to change or augment the CDM? Please follow the questions in the [decision tree](cdmDecisionTree.html) to help you determine what you will need.
|
||||
|
||||
### 2. Sign off from Work Groups [Completed for v5.4]
|
||||
### 2. Sign off from Work Groups
|
||||
|
||||
Each member of the CDM WG is a liaison for another workgroup in the community. They are responsible for presenting the proposed changes to the CDM and collecting the feedback. This has resulted in very helpful suggestions from the EHR, Data Quality, Device, HADES, and ACHILLES groups. This outreach has proven to be very effective and should result in a very stable version.
|
||||
|
||||
### 3. Release DDLs
|
||||
|
||||
After all changes and suggestions are agreed upon by the community and work groups the next step is to generate the DDLs. The CDM WG hosted a hackathon on August 18-19, 2021. During this time the group created an R package to automatically generate the DDLs and the code to instantiate an empty CDM instance. Changes were made to v5.3 to generate v5.4 and the repository was refactored.
|
||||
After all changes and suggestions are agreed upon by the community and work groups the next step is to generate the DDLs. For example, the CDM WG hosted a hackathon on August 18-19, 2021. During this time the group created an R package to automatically generate the DDLs and the code to instantiate an empty CDM instance. Changes were made to v5.3 to generate v5.4 and the repository was refactored.
|
||||
|
||||
### 4. Software Update
|
||||
|
||||
|
|
@ -39,7 +41,7 @@ This is the final stage of the CDM refresh cycle. Once the DDLs are ready and th
|
|||
|
||||
The CDM working group meets the first and third Tuesday of the month. See below for links to the meetings.
|
||||
|
||||
**Every first Tuesday of the month at 1pm est** [Teams Meeting](https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1601910741972?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%2281c21b6d-448d-4634-abbc-6b0962d1138a%22%7d)
|
||||
**Every first Tuesday of the month at 10am est** [Teams Meeting](https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1601910741972?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%2281c21b6d-448d-4634-abbc-6b0962d1138a%22%7d)
|
||||
|
||||
**Every third Tuesday of the month at 1pm est** [Teams Meeting](https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1611000164347?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%223c193b7f-c2ab-4bcf-b88c-f89a6b1fba38%22%7d)
|
||||
|
||||
|
|
|
|||
|
|
@ -0,0 +1,91 @@
|
|||
---
|
||||
title: '<div><img src="ohdsi40x40.png"></img> How to Request Changes to the CDM </div>'
|
||||
output:
|
||||
html_document:
|
||||
toc: TRUE
|
||||
toc_float: TRUE
|
||||
---
|
||||
|
||||
Are you in the right place? Please answer the questions in the [decision tree](cdmDecisionTree.html) prior to beginning a CDM Request to make sure you aren't missing something.
|
||||
|
||||
As OHDSI is an open-source community working towards developing a Common Data Model that fulfills the needs of its users, it is often the case that changes need to be made to the model as the community and its research continues to mature. However, the number of people, institutions, and initiatives that rely on the OMOP CDM to advance the science of observational health has grown dramatically since its inception in 2015. Therefore, care must be taken when considering any update to the model, big or small. This document outlines the process that should be taken to ratify a change to the CDM.
|
||||
|
||||
**If you would like guidance prior to starting this process, consider contacting us on our [GitHub](https://github.com/OHDSI/CommonDataModel) or [Teams Channel](https://teams.microsoft.com/l/team/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/conversations?groupId=a6f2c516-e568-4974-8f1e-a7bdc2f997c5&tenantId=a30f0094-9120-4aab-ba4c-e5509023b2d5).**
|
||||
|
||||
|
||||
### Scope
|
||||
|
||||
- What kind of changes?
|
||||
- Minor, e.g. new field in existing table
|
||||
- Major, e.g. breaking changes, additional tables
|
||||
- Who can propose changes?
|
||||
- Individuals, OHDSI working groups, organizations
|
||||
|
||||
## Step 1: Proposal
|
||||
|
||||
Once a group or organization has decided on the update they would like made to the model, they must produce a document including the following:
|
||||
|
||||
1. A clear description of the change or addition including the User Guide and ETL Conventions in the same structure as what is present on the website for every table and field currently in the CDM.
|
||||
2. A clearly defined use case noting why the latest version of the OMOP CDM fails to adequately address said use case. This should include describing what you have already tried with the latest version of the OMOP CDM and why it does not meet your needs.
|
||||
3. An example of how the requested change or addition will be used in practice. This can be in the form of sample data, SQL code, a diagram, or text. The proposal can optionally include suggestions as to how other OHDSI tools (Achilles, DataQualityDashboard, Atlas, etc.) should work with your change or addition.
|
||||
|
||||
Once the document is ready to submit, please email [CDM Proposals - Workgroup - Common Data Model](mailto:a58abde7.ohdsi.org@amer.teams.ms). This will go directly to a separate channel in the OHDSI Teams environment that is available to all members of the CDM Working Group.
|
||||
After submitting your document with your proposal to email listed above, someone in the OMOP CDM Working Group will respond to you within 2 weeks. The potential outcomes are as follows:
|
||||
|
||||
- Proposal merits further review (move on to next steps)
|
||||
- Proposal is not ready for workgroup review due to one or more factors
|
||||
- Incomplete
|
||||
- Insufficiently aligned with the OMOP framework
|
||||
- Poorly described use case
|
||||
|
||||
## Step 2: Initial Presentation
|
||||
|
||||
Should your proposals merit further review, the OMOP CDM Working Group will reach out to you to schedule a time for you to present your case at an upcoming meeting. You will be given 15-30 minutes to present your document and you can include anything you feel will help illustrate the need and your potential solution. The group will then discuss, ask questions, and potentially offer other solutions. Depending on the nature of the request, this may go over multiple sessions and you may be asked to make changes to your initial design. At the end of this process your proposal will then be put to consensus in the CDM WG. If the group decides no, they will give feedback describing why they did not feel your proposal should be accepted at this time. If the group decides yes, you move on to step 3.
|
||||
|
||||
**Potential Decision Criteria:**
|
||||
|
||||
- If the change is foundational to OHDSI tools, then the proposal will be put to the larger community open to public comment
|
||||
- How generalizable is your change? Can it be readily applied to other use cases?
|
||||
- Are the proposed changes/additions well designed from a modeling perspective? Do they follow the existing OMOP CDM conventions?
|
||||
- What are the consequences of the change? Are they potentially breaking changes or are they just changes to existing conventions? Will they require the remapping of existing OMOP datasources?
|
||||
- How complicated is your change? Is it an addition of a field or multiple tables?
|
||||
|
||||
## Step 3: Preliminary Decision
|
||||
|
||||
If the proposal is accepted in the preliminary decision, then a branch will be created in the CommonDataModel repository, based on the latest version of the OMOP CDM in use (currently v5.4). It will then be your responsibility to apply the change programmatically in this branch. This should include:
|
||||
|
||||
- Updating the CSV file with the CDM specification, including the User Guide and ETL Conventions documentation
|
||||
- Generating the DDL files with the change
|
||||
- Testing the new DDL files in at least one supported environment
|
||||
|
||||
Once the DDLs with the proposed change are created and tested, you should then ETL some data (either real or synthetic) into the new table/fields. Then, an example cohort should be created that utilizes the change or addition and clearly displays how it can be used in a real study. It is expected that during this stage the proposal will change as you work through your idea in a tangible environment.
|
||||
|
||||
**Potential Decision Criteria:**
|
||||
|
||||
- How would you evaluate the quality of this new field/table?
|
||||
- What characterizations would you perform?
|
||||
- How would you perform a study using this new feature?
|
||||
|
||||
**Potential Outcomes:**
|
||||
|
||||
- Proposal demonstrates merit for further consideration as:
|
||||
- a core data model change (move on to next steps)
|
||||
- an extension (how do we deal with these/do we have ownership of them?)
|
||||
- Proposal does not demonstrate merit for further consideration at this time, and:
|
||||
- recommend as a LOCAL extension
|
||||
- recommend a different course
|
||||
|
||||
## Step 4: Final Presentation
|
||||
|
||||
After generating, testing, and implementing your proposal in a real-world environment the CDM working group will invite you again to present your findings in another 15-30 minute presentation. This should include learnings from the exercise and any updates made to the initial proposal.
|
||||
|
||||
## Step 5: Final Decision
|
||||
|
||||
At this point, the working group liaisons will also take the proposal to other groups to elicit feedback. Then the CDM working group will vote and give a final decision on the proposed change. If ratified, the branch in the repository will be merged into the develop branch to be included in a next version of the OMOP Common Data Model.
|
||||
|
||||
The change should initiate requests for features in tools. The end of this process should be a trigger for using the new feature as per the use case. The group should also produce at least one query for the query library on how to work with the new addition/change.
|
||||
|
||||
### Resources
|
||||
|
||||
“Implementing & adopting a customized OMOP Common Data Model” (Melany Philofsky, OHDSI Symposium 2021) https://www.ohdsi.org/2021-global-symposium-showcase-18/
|
||||
|
||||
|
|
@ -0,0 +1,10 @@
|
|||
---
|
||||
title: "Contact the Vocab Team"
|
||||
output: html_document
|
||||
---
|
||||
|
||||
Okay so you have something you would like to add to the CDM but there is not an existing OMOP vocabulary nor an open-source vocabulary we can bring in to support it. **In this case, please contact the vocabulary team on next steps** as data elements in the CDM must have a vocabulary in place before they can be implemented.
|
||||
|
||||
[Vocabulary Teams Channel](https://teams.microsoft.com/l/channel/19%3a31208179438d45749ff484124e7b1e5e%40thread.tacv2/Vocabulary%2520Subgroup?groupId=a6f2c516-e568-4974-8f1e-a7bdc2f997c5&tenantId=a30f0094-9120-4aab-ba4c-e5509023b2d5)
|
||||
|
||||
Once you come to consensus with the vocabulary team regarding your needs, please follow the [CDM Request Process](cdmRequestProcess.html) to begin the steps soliciting a change or addition to the model itself. Need more guidance? Consider contacting the CDM Working Group on our [GitHub](https://github.com/OHDSI/CommonDataModel) or [Teams Channel](https://teams.microsoft.com/l/team/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/conversations?groupId=a6f2c516-e568-4974-8f1e-a7bdc2f997c5&tenantId=a30f0094-9120-4aab-ba4c-e5509023b2d5).
|
||||
|
|
@ -46,7 +46,7 @@ The CDM is managed by the OHDSI CDM Working Group. If you would like to join our
|
|||
|
||||
The CDM working group meets the first and third Tuesday of the month. See below for links to the meetings.
|
||||
|
||||
**Every first Tuesday of the month at 1pm est** [Teams Meeting](https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1601910741972?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%2281c21b6d-448d-4634-abbc-6b0962d1138a%22%7d)
|
||||
**Every first Tuesday of the month at 10am est** [Teams Meeting](https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1601910741972?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%2281c21b6d-448d-4634-abbc-6b0962d1138a%22%7d)
|
||||
|
||||
**Every third Tuesday of the month at 1pm est** [Teams Meeting](https://teams.microsoft.com/l/meetup-join/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/1611000164347?context=%7b%22Tid%22%3a%22a30f0094-9120-4aab-ba4c-e5509023b2d5%22%2c%22Oid%22%3a%223c193b7f-c2ab-4bcf-b88c-f89a6b1fba38%22%7d)
|
||||
|
||||
|
|
|
|||
|
|
@ -0,0 +1,6 @@
|
|||
---
|
||||
title: "Leave As Is"
|
||||
output: html_document
|
||||
---
|
||||
|
||||
Okay, so you do not have a network use case but multiple collaborators have access to the element you are interested in adding to the CDM. **In this circumstance, the CDM Working Group suggests leaving the model as-is.** Without a network use case there is no need to augment the data model. If this is something you need for your work, consider a [local change](localChange.html) or a model extension.
|
||||
|
|
@ -0,0 +1,6 @@
|
|||
---
|
||||
title: "Local Change"
|
||||
output: html_document
|
||||
---
|
||||
|
||||
Since you do not have a network use case and this element is specific to your data source, **feel free to create a local change to your instance of the OMOP Common Data Model.** Augmenting the model at your institution for administrative purposes or other in-house needs is totally acceptable with the understanding that any local changes cannot and should not be relied upon in network studies or supported by the open-source tools.
|
||||
|
|
@ -0,0 +1,10 @@
|
|||
---
|
||||
title: "Network Use Case"
|
||||
output: html_document
|
||||
---
|
||||
|
||||
Alright, so you think you might need to change the OMOP Common Data Model. **Do you have a documented network use case for this data need? This could take the form of an upcoming study or a convention for how to store information.** In this scenario, at least two or more collaborators with data to contribute constitute a network need.
|
||||
|
||||
[Yes, I have a network use case](useCaseY.html)
|
||||
|
||||
[No, I do not have a network use case](useCaseN.html)
|
||||
|
|
@ -66,11 +66,11 @@ for(tb in tables) {
|
|||
loopTable <- subset(cdmSpecsClean, `CDM Table` == tb)
|
||||
loopTable <- subset(loopTable, select = -c(1))
|
||||
|
||||
print(kable(x = loopTable, align = "l", row.names = FALSE, format = "html") %>%
|
||||
print(kable(x = loopTable, align = "l", row.names = FALSE, format = "html", escape = FALSE) %>%
|
||||
column_spec(1, bold = T) %>%
|
||||
column_spec(2, width = "3in", include_thead = T) %>%
|
||||
column_spec(3, width = "4in", include_thead = T) %>%
|
||||
column_spec(4:10, width = "1in", include_thead = T) %>%
|
||||
# column_spec(2, width = "3in", include_thead = T) %>%
|
||||
# column_spec(3, width = "4in", include_thead = T) %>%
|
||||
# column_spec(4:9, width = "1in", include_thead = T) %>%
|
||||
kable_styling(c("condensed","hover"), position = "center", full_width = T, font_size = 13))
|
||||
|
||||
|
||||
|
|
|
|||
|
|
@ -0,0 +1,10 @@
|
|||
---
|
||||
title: "Local Data"
|
||||
output: html_document
|
||||
---
|
||||
|
||||
Okay, so you don't have a network use case. **Is this data element specific to your data source, or are there others in the community who might also have this data but don't yet need it for a study or data model convention?**
|
||||
|
||||
[Yes, this element is specific to my data source](localChange.html)
|
||||
|
||||
[No, there are others in the community who also have this data](leaveAsIs.html)
|
||||
|
|
@ -0,0 +1,13 @@
|
|||
---
|
||||
title: "OMOP Vocabulary"
|
||||
output: html_document
|
||||
---
|
||||
|
||||
Great, you have a network use case!
|
||||
|
||||
Next question: **Is there an existing OMOP vocabulary to support this new element? If you are unsure, feel free to check [Athena](https://athena.ohdsi.org/search-terms/terms?query).**
|
||||
|
||||
[Yes, I have all the required vocabulary I need](vocabY.html)
|
||||
|
||||
[No, I there is not an existing OMOP vocabulary to support my request](vocabN.html)
|
||||
|
||||
|
|
@ -0,0 +1,10 @@
|
|||
---
|
||||
title: "Open Source Vocabulary"
|
||||
output: html_document
|
||||
---
|
||||
|
||||
Okay, so you have a use case but you don't have an OMOP vocabulary to support your need. **Is there an existing open-source (not proprietary or custom) vocabulary that has not yet been incorporated into the OMOP vocabulary?**
|
||||
|
||||
[Yes, the vocabulary exists, it just needs to be brought in](vocabRequest.html)
|
||||
|
||||
[No, there is no open-source vocabulary for this data element](contactVocab.html)
|
||||
|
|
@ -0,0 +1,10 @@
|
|||
---
|
||||
title: "Vocabulary Request"
|
||||
output: html_document
|
||||
---
|
||||
|
||||
Okay so you have something you would like to add to the CDM and there is an existing OMOP vocabulary we can bring in to support it. **In this case, please open an issue on the vocabulary github with the details of what you need added** as data elements in the CDM must have a vocabulary in place before they can be implemented. The team will follow up with you should they need additional information.
|
||||
|
||||
[Vocabulary GitHub Issue Tracker](https://github.com/OHDSI/Vocabulary-v5.0/issues)
|
||||
|
||||
Once that request is made, please follow the [CDM Request Process](cdmRequestProcess.html) to begin the steps soliciting a change or addition to the model itself. Need more guidance? Consider contacting the CDM Working Group on our [GitHub](https://github.com/OHDSI/CommonDataModel) or [Teams Channel](https://teams.microsoft.com/l/team/19%3a133f2b94b86a41a884d4a4d160610148%40thread.tacv2/conversations?groupId=a6f2c516-e568-4974-8f1e-a7bdc2f997c5&tenantId=a30f0094-9120-4aab-ba4c-e5509023b2d5).
|
||||
|
|
@ -0,0 +1,8 @@
|
|||
---
|
||||
title: "Request Process"
|
||||
output: html_document
|
||||
---
|
||||
|
||||
Great, so you have a network use case and an existing OMOP Vocabulary! **From here, please follow the steps to formally request a change to the OMOP Common Data Model.**
|
||||
|
||||
[CDM Request Process](cdmRequestProcess.html)
|
||||
Loading…
Reference in New Issue